Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026332.1

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1889

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026332.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 875 bp

gcctacccccagcttcaatagaaacgattgctgagaagtcattggcggagttgaaactcactgaggcagctaaaatgagagctgggagttacagtggaggaatgaaacgtcgcctcagtgttgcaatagcctttattggtgacccgaagttggttattttagatgaaccgacaaccggtatagaccccataacaagaaggcatgtctgggacatcatacaggaggccaagaaagggcgttcaattgtcctaacaacccattcaatggaagaagctgacattctaagtgaccggataggaatcatggcaaaggggaggctccgttgcattggaacttcaatcagactgaagtcacggtttgggagtggttttattgctaatgtgagcttaaggggaggcgctgatagccaaagtcatgaatctgtgaagcagttctttaaataccatttggatgttttacacaaagaagagaccgactgctatctgacttttgttattcctcaggaaaaagagggacgtttgacgaatttttttgctgagcttcaagataggcaacatgaatttggtatagctgacatccaactcggtctcacaactctagaagaagttttcttgaatatatcaaggcaagcggagctagaagccgccatggcagaagggaggctggttactctcactttaacgtctggaaagtcagttgagatacccgtaggagccgagcatgcttggattccagaaacagaatctgaagagcatccaaaagggcttatggtagaagtttactgggatcaagatgagtctggtaaactctgcattgctggtcactcagccgaaactccagtacctctgaatgttgatcccatgagtttgcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

290

Amino Acids

32.08

Weight (kDa)

5.44

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	264
AciI	CCGC	3 cut(s)	46, 631, 644
AclWI	GGATC	2 cut(s)	794, 850
AcsI	RAATTY	2 cut(s)	525, 559
AcuI	CTGAAG	2 cut(s)	367, 767
AfaI	GTAC	1 cut(s)	842
AfiI	CCNNNNNNNGG	4 cut(s)	150, 175, 233, 264
AflII	CTTAAG	1 cut(s)	387
AgeI	ACCGGT	1 cut(s)	175
AgsI	TTSAA	7 cut(s)	17, 54, 242, 263, 338, 544, 615
AluBI	AGCT	8 cut(s)	13, 70, 82, 274, 386, 540, 571, 636
AluI	AGCT	8 cut(s)	13, 70, 82, 274, 386, 540, 571, 636
Alw26I	GTCTC	2 cut(s)	463, 592
AlwI	GGATC	2 cut(s)	794, 850
AlwNI	CAGNNNCTG	1 cut(s)	745
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	2 cut(s)	525, 559
AsiGI	ACCGGT	1 cut(s)	175
Asp700I	GAANNNNTTC	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	500
BaeI	ACNNNNGTAYC	2 cut(s)	824, 857
BbvI	GCAGC	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	463, 592
BfaI	CTAG	2 cut(s)	598, 637
BfoI	RGCGCY	1 cut(s)	401
BfrI	CTTAAG	1 cut(s)	387
BglI	GCCNNNNNGGC	1 cut(s)	649
BisI	GCNGC	2 cut(s)	68, 644
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	2 cut(s)	69, 645
BmiI	GGNNCC	2 cut(s)	319, 714
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	1 cut(s)	762
BmuI	ACTGGG	1 cut(s)	792
BoxI	GACNNNNGTC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	821
Bpu1102I	GCTNAGC	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	298
BsaI	GGTCTC	2 cut(s)	463, 592
BsaJI	CCNNGG	1 cut(s)	647
BsaWI	WCCGGW	2 cut(s)	175, 290
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 306, 336
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 175, 233, 264
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	2 cut(s)	787, 838
Bse21I	CCTNAGG	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	812
Bse8I	GATNNNNATC	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	647
BseGI	GGATG	3 cut(s)	456, 575, 753
BseJI	GATNNNNATC	1 cut(s)	298
BseLI	CCNNNNNNNGG	4 cut(s)	150, 175, 233, 264
BseMI	GCAATG	1 cut(s)	812
BseMII	CTCAG	6 cut(s)	23, 53, 129, 514, 527, 839
BseNI	ACTGG	2 cut(s)	787, 838
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	2 cut(s)	9, 82
BshFI	GGCC	1 cut(s)	226
BshTI	ACCGGT	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	176, 291
BslFI	GGGAC	2 cut(s)	223, 527
BslI	CCNNNNNNNGG	4 cut(s)	150, 175, 233, 264
BsmAI	GTCTC	2 cut(s)	463, 592
BsmFI	GGGAC	2 cut(s)	223, 527
BsnI	GGCC	1 cut(s)	226
Bso31I	GGTCTC	2 cut(s)	463, 592
Bsp143I	GATC	2 cut(s)	786, 855
Bsp1720I	GCTNAGC	1 cut(s)	536
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	3 cut(s)	46, 631, 644
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	6 cut(s)	24, 54, 128, 513, 528, 838
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	319, 714
BspPI	GGATC	2 cut(s)	794, 850
BspQI	GCTCTTC	1 cut(s)	743
BspTI	CTTAAG	1 cut(s)	387
BspTNI	GGTCTC	2 cut(s)	463, 592
BsrDI	GCAATG	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	787, 838
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	647
BssMI	GATC	2 cut(s)	786, 855
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	94, 356
Bst6I	CTCTTC	2 cut(s)	461, 743
BstAFI	CTTAAG	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	629, 722
BstDEI	CTNAG	7 cut(s)	32, 62, 115, 283, 500, 536, 825
BstDSI	CCRYGG	1 cut(s)	647
BstEII	GGTNACC	1 cut(s)	139
BstF5I	GGATG	3 cut(s)	456, 575, 753
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	2 cut(s)	789, 858
BstMAI	GTCTC	2 cut(s)	463, 592
BstMBI	GATC	2 cut(s)	786, 855
BstMWI	GCNNNNNNNGC	4 cut(s)	404, 633, 649, 721
BstNSI	RCATGY	2 cut(s)	205, 724
BstPAI	GACNNNNGTC	1 cut(s)	348
BstPI	GGTNACC	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	79
Bsu36I	CCTNAGG	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	226
BtgI	CCRYGG	1 cut(s)	647
BtsCI	GGATG	3 cut(s)	456, 575, 753
BtsIMutI	CAGTG	3 cut(s)	59, 99, 123
Cac8I	GCNNGC	2 cut(s)	629, 722
CaiI	CAGNNNCTG	1 cut(s)	745
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	841
CspAI	ACCGGT	1 cut(s)	175
CviAII	CATG	7 cut(s)	202, 303, 415, 556, 648, 721, 861
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	7 cut(s)	32, 62, 115, 283, 500, 536, 825
DpnI	GATC	2 cut(s)	788, 857
DpnII	GATC	2 cut(s)	786, 855
DraI	TTTAAA	1 cut(s)	438
Eam1104I	CTCTTC	2 cut(s)	461, 743
EarI	CTCTTC	2 cut(s)	461, 743
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	647
Eco31I	GGTCTC	2 cut(s)	463, 592
Eco57I	CTGAAG	2 cut(s)	367, 767
Eco81I	CCTNAGG	1 cut(s)	500
Eco91I	GGTNACC	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	7 cut(s)	205, 306, 418, 559, 651, 724, 864
FalI	AAGNNNNNCTT	2 cut(s)	418, 450
FaqI	GGGAC	2 cut(s)	223, 527
FatI	CATG	7 cut(s)	201, 302, 414, 555, 647, 720, 860
Fnu4HI	GCNGC	2 cut(s)	68, 644
FokI	GGATG	3 cut(s)	463, 562, 740
Fsp4HI	GCNGC	2 cut(s)	68, 644
FspBI	CTAG	2 cut(s)	598, 637
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	2 cut(s)	68, 644
GsaI	CCCAGC	2 cut(s)	13, 86
GsuI	CTGGAG	1 cut(s)	821
HaeII	RGCGCY	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	2 cut(s)	176, 291
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	7 cut(s)	205, 306, 418, 559, 651, 724, 864
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HinfI	GANTC	5 cut(s)	299, 418, 729, 742, 796
HpaII	CCGG	2 cut(s)	176, 291
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	780, 805
Hpy188I	TCNGA	4 cut(s)	343, 485, 747, 848
Hpy188III	TCNNGA	8 cut(s)	415, 502, 544, 598, 612, 686, 733, 790
Hpy8I	GTNNAC	2 cut(s)	780, 805
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	191, 649
HpyCH4III	ACNGT	2 cut(s)	94, 356
HpyCH4IV	ACGT	3 cut(s)	108, 516, 682
HpyCH4V	TGCA	4 cut(s)	124, 326, 812, 870
HpyF10VI	GCNNNNNNNGC	4 cut(s)	404, 633, 649, 721
HpyF3I	CTNAG	7 cut(s)	32, 62, 115, 283, 500, 536, 825
HpySE526I	ACGT	3 cut(s)	108, 516, 682
Hsp92II	CATG	7 cut(s)	205, 306, 418, 559, 651, 724, 864
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	786, 855
LguI	GCTCTTC	1 cut(s)	743
LmnI	GCTCC	3 cut(s)	323, 633, 712
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	762
MaeI	CTAG	2 cut(s)	598, 637
MaeII	ACGT	3 cut(s)	108, 516, 682
MaeIII	GTNAC	6 cut(s)	88, 139, 286, 350, 666, 820
MalI	GATC	2 cut(s)	788, 857
MboI	GATC	2 cut(s)	786, 855
MboII	GAAGA	4 cut(s)	280, 478, 613, 760
MfeI	CAATTG	1 cut(s)	242
MluCI	AATT	3 cut(s)	242, 525, 559
MlyI	GAGTC	1 cut(s)	805
MmeI	TCCRAC	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	430
MseI	TTAA	3 cut(s)	388, 437, 679
MslI	CAYNNNNRTG	1 cut(s)	449
MspCI	CTTAAG	1 cut(s)	387
MspI	CCGG	2 cut(s)	176, 291
MunI	CAATTG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	404, 633, 649, 721
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	2 cut(s)	786, 855
NlaIII	CATG	7 cut(s)	205, 306, 418, 559, 651, 724, 864
NlaIV	GGNNCC	2 cut(s)	319, 714
NmeAIII	GCCGAG	1 cut(s)	741
NmuCI	GTSAC	4 cut(s)	139, 286, 350, 820
NspI	RCATGY	2 cut(s)	205, 724
PaeI	GCATGC	1 cut(s)	724
PagI	TCATGA	1 cut(s)	414
PciSI	GCTCTTC	1 cut(s)	743
PdmI	GAANNNNTTC	1 cut(s)	430
PfeI	GAWTC	4 cut(s)	299, 418, 729, 742
PflMI	CCANNNNNTGG	1 cut(s)	264
PinAI	ACCGGT	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	69, 645
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
PshAI	GACNNNNGTC	1 cut(s)	348
PspEI	GGTNACC	1 cut(s)	139
PspFI	CCCAGC	2 cut(s)	9, 82
PspN4I	GGNNCC	2 cut(s)	319, 714
PstNI	CAGNNNCTG	1 cut(s)	745
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
RseI	CAYNNNNRTG	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	743
SaqAI	TTAA	3 cut(s)	388, 437, 679
SatI	GCNGC	2 cut(s)	68, 644
Sau3AI	GATC	2 cut(s)	786, 855
SchI	GAGTC	1 cut(s)	805
SfaNI	GCATC	1 cut(s)	762
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
SphI	GCATGC	1 cut(s)	724
Sse9I	AATT	3 cut(s)	242, 525, 559
SsiI	CCGC	3 cut(s)	46, 631, 644
SspMI	CTAG	2 cut(s)	598, 637
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	94, 356
TaiI	ACGT	3 cut(s)	111, 519, 685
TaqII	GACCGA	2 cut(s)	487, 574
TasI	AATT	3 cut(s)	242, 525, 559
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	4 cut(s)	299, 418, 729, 742
Tru1I	TTAA	3 cut(s)	388, 437, 679
Tru9I	TTAA	3 cut(s)	388, 437, 679
TscAI	CASTG	3 cut(s)	66, 99, 123
TseFI	GTSAC	4 cut(s)	139, 286, 350, 820
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	4 cut(s)	139, 286, 350, 820
TspDTI	ATGAA	4 cut(s)	118, 179, 431, 572
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	3 cut(s)	66, 99, 123
Van91I	CCANNNNNTGG	1 cut(s)	264
Vha464I	CTTAAG	1 cut(s)	387
XapI	RAATTY	2 cut(s)	525, 559
XbaI	TCTAGA	1 cut(s)	597
XceI	RCATGY	2 cut(s)	205, 724
XmnI	GAANNNNTTC	1 cut(s)	430
XspI	CTAG	2 cut(s)	598, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.