Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8514565.1

Orthogroup ID

OG0000771

Physical Location & Seq

Genomic Coordinates Reverse (-)

384 .. 3070

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8514565.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atgctttgttcctctctttggttagagcgtggcatttgtagttgcataggttcacttccaccattggagcacattactccagacgatgaagatgtccttgaagaggagaacattgttaaagagcaaactaaggaaggcacagttgatccaaaccttgcagttcagatacgtggccttgtaaaaacatatcctggcaaaagacatggttgctgtcgtagcaagaggacgtcaccataccatgctctcaagtttgatattctttgggatgcattgtctgggcaagagcatctccacttattcgctagtatcaaaggccttcctccagcatcaataaaattggctactatgaagtcactggaagaggtgaaactgactgatgcagccaaaatgagagctggtagttacagtggaggaatgaagcgtcgcttgagtgttgcaatagcccttattggtgatccgaagttagttatcctagatgaaccgacaactggtatggatccaatatctagaaggcatgtatgggacatcatagaggatgcaaagaaaggtcgtgcaatcgtcctgaccactcactcgatggaagaagctgacatattaggtgaccggataggaattatggcaaagggtaggctccgctgcattggaacttcaatcaggctgaagtcacgatttgggactggtttcattgctaatgtgagattcaaagaaagcacaaatggggatgaagttgcaacatctcatcacgaagctgtgaagcagttatttaaatataaatttttcgcggaacttcaagatcaagaagatgaatttggcatagcagacattcaaattggacttgcaactcttgaagaagttttcctaaatatcgcaaggcgggcagagctagaaagtgccacagccgaggggaggttggttactctcactttaacatctggggtcttggttcagattcctgccggagctaggtttgttgggattccgggaacagtctcttctgagaatccaaacgggcttatggtagaagttttttgggagcaagatgaatctggtgcactatgcatatctgaccactcacctgaaaccccaatacctcctaatattgcagttgaactgatgccaccttcaatttcgcccagaaatttgtttggccgttccaaaccagtaaacggcattgtgctcgactccgaccaaatcactagttctttcggtctaaatggtcatacaggtagttggcgaaggacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

414

Amino Acids

45.35

Weight (kDa)

5.93

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47730 AT5G61690 AT5G61690 AT5G61730 AT5G61730
fragaria_vesca	FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_3g33610 FvH4_5g15280 FvH4_5g17010 FvH4_5g17010 FvH4_5g17010
malus_domestica	MD00G1160200.v1.1 MD11G1124700.v1.1
prunus_persica	Prupe.5G188400_v2.0.a1 Prupe.5G229500_v2.0.a1 Prupe.6G093200_v2.0.a1 Prupe.6G093200_v2.0.a1
pyrus_communis	pycom06g19960 pycom11g10520
rosa_chinensis	RchiOBHm_Chr5g0061021 RchiOBHm_Chr7g0178841 RchiOBHm_Chr7g0180781
rosa_laevigata	RLG00000005230 RLG00000005399 RLG00000005401 RLG00000005403 RLG00000005405 RLG00000035420
rosa_multiflora	Rmu_co8148594.1_g000001 Rmu_co8316781.1_g000001 Rmu_co8482325.1_g000001 Rmu_co8514565.1_g000001 Rmu_sc0000888.1_g000001 Rmu_sc0007457.1_g000010 Rmu_sc0026332.1_g000001 Rmu_ssc0000131.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019630 Rroxscaffold_3G00272530 Rroxscaffold_3G00274500
rosa_rugosa	Rorug01G0114900 Rorug01G0115000 Rorug05G0336100 Rorug06G0420200 Rorug06G0420200 Rorug06G0420300 Rorug06G0420300 Rorug06G0436000
rosa_samantha	Rh1BG106800 Rh5AG398400 Rh5BG411300 Rh5CG436300 Rh5DG425700 Rh7AG019700 Rh7AG037700 Rh7BG019100 Rh7BG037400 Rh7CG019800 Rh7CG039100 Rh7DG019700
rosa_wichuraiana	Rw5G037560 Rw7G001590 Rw7G003110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	230
AccII	CGCG	1 cut(s)	782
AciI	CCGC	3 cut(s)	634, 782, 874
AclWI	GGATC	4 cut(s)	140, 449, 491, 504
AcoI	YGGCCR	1 cut(s)	1147
AcsI	RAATTY	3 cut(s)	773, 806, 1138
AcuI	CTGAAG	1 cut(s)	680
AcyI	GRCGYC	1 cut(s)	227
AfiI	CCNNNNNNNGG	6 cut(s)	18, 103, 488, 906, 963, 1166
AgsI	TTSAA	8 cut(s)	101, 651, 703, 791, 827, 848, 1109, 1125
AhlI	ACTAGT	1 cut(s)	1196
AjnI	CCWGG	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AluBI	AGCT	5 cut(s)	395, 587, 749, 883, 962
AluI	AGCT	5 cut(s)	395, 587, 749, 883, 962
Alw21I	GWGCWC	3 cut(s)	72, 1054, 1179
Alw26I	GTCTC	1 cut(s)	994
Alw44I	GTGCAC	1 cut(s)	1050
AlwI	GGATC	4 cut(s)	140, 449, 491, 504
AoxI	GGCC	3 cut(s)	172, 313, 1147
ApaLI	GTGCAC	1 cut(s)	1050
ApeKI	GCWGC	2 cut(s)	380, 636
ApoI	RAATTY	3 cut(s)	773, 806, 1138
AspS9I	GGNCC	1 cut(s)	1239
AsuC2I	CCSGG	1 cut(s)	981
AsuHPI	GGTGA	5 cut(s)	222, 376, 464, 611, 1065
AvaII	GGWCC	1 cut(s)	1239
BaeGI	GKGCMC	1 cut(s)	1054
BamHI	GGATCC	1 cut(s)	496
Bbv12I	GWGCWC	3 cut(s)	72, 1054, 1179
BbvI	GCAGC	2 cut(s)	392, 623
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	2 cut(s)	1134, 1183
BcgI	CGANNNNNNTGC	2 cut(s)	1159, 1193
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	981
BcoDI	GTCTC	1 cut(s)	994
BcuI	ACTAGT	1 cut(s)	1196
BfaI	CTAG	6 cut(s)	303, 473, 507, 884, 963, 1197
BisI	GCNGC	2 cut(s)	381, 637
BlsI	GCNGC	2 cut(s)	382, 638
Bme1390I	CCNGG	2 cut(s)	192, 981
Bme18I	GGWCC	1 cut(s)	1239
BmgT120I	GGNCC	1 cut(s)	1239
BmiI	GGNNCC	2 cut(s)	498, 632
BmrFI	CCNGG	2 cut(s)	192, 981
BmsI	GCATC	6 cut(s)	256, 295, 335, 367, 526, 1104
BpmI	CTGGAG	2 cut(s)	63, 306
BpuEI	CTTGAG	2 cut(s)	230, 448
BpuMI	CCSGG	1 cut(s)	981
BsaAI	YACGTR	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	900
BsaWI	WCCGGW	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 103, 488, 906, 963, 1166
Bse1I	ACTGG	4 cut(s)	360, 493, 682, 1160
Bse3DI	GCAATG	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	900
BseGI	GGATG	3 cut(s)	271, 541, 727
BseLI	CCNNNNNNNGG	6 cut(s)	18, 103, 488, 906, 963, 1166
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	1 cut(s)	987
BseNI	ACTGG	4 cut(s)	360, 493, 682, 1160
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	1054
BseXI	GCAGC	2 cut(s)	392, 623
Bsh1236I	CGCG	1 cut(s)	782
BshFI	GGCC	3 cut(s)	174, 315, 1149
BsiHKAI	GWGCWC	3 cut(s)	72, 1054, 1179
BsiSI	CCGG	3 cut(s)	604, 957, 980
BslFI	GGGAC	2 cut(s)	536, 688
BslI	CCNNNNNNNGG	6 cut(s)	18, 103, 488, 906, 963, 1166
BsmAI	GTCTC	1 cut(s)	994
BsmFI	GGGAC	2 cut(s)	536, 688
BsnI	GGCC	3 cut(s)	174, 315, 1149
Bsp1286I	GDGCHC	3 cut(s)	72, 1054, 1179
Bsp143I	GATC	4 cut(s)	145, 454, 496, 793
BspACI	CCGC	3 cut(s)	634, 782, 874
BspANI	GGCC	3 cut(s)	174, 315, 1149
BspCNI	CTCAG	1 cut(s)	988
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	2 cut(s)	498, 632
BspPI	GGATC	4 cut(s)	140, 449, 491, 504
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	4 cut(s)	360, 493, 682, 1160
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	4 cut(s)	145, 454, 496, 793
BssNI	GRCGYC	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	142, 407, 988
Bst6I	CTCTTC	3 cut(s)	96, 354, 997
BstACI	GRCGYC	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	2 cut(s)	129, 996
BstEII	GGTNACC	1 cut(s)	599
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	3 cut(s)	271, 541, 727
BstFNI	CGCG	1 cut(s)	782
BstKTI	GATC	4 cut(s)	148, 457, 499, 796
BstMAI	GTCTC	1 cut(s)	994
BstMBI	GATC	4 cut(s)	145, 454, 496, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 875, 880
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	518
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	190, 979
BstSLI	GKGCMC	1 cut(s)	1054
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	2 cut(s)	392, 623
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	3 cut(s)	174, 315, 1149
BtsCI	GGATG	3 cut(s)	271, 541, 727
BtsIMutI	CAGTG	2 cut(s)	353, 412
Cac8I	GCNNGC	1 cut(s)	876
Cfr13I	GGNCC	1 cut(s)	1239
CseI	GACGC	1 cut(s)	410
CviAII	CATG	3 cut(s)	203, 239, 515
DdeI	CTNAG	2 cut(s)	129, 996
DpnI	GATC	4 cut(s)	147, 456, 498, 795
DpnII	GATC	4 cut(s)	145, 454, 496, 793
DraI	TTTAAA	1 cut(s)	766
EaeI	YGGCCR	1 cut(s)	1147
Eam1104I	CTCTTC	3 cut(s)	96, 354, 997
EarI	CTCTTC	3 cut(s)	96, 354, 997
Eco147I	AGGCCT	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	1239
Eco57I	CTGAAG	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	1239
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	190
EcoT22I	ATGCAT	2 cut(s)	271, 1061
FaeI	CATG	3 cut(s)	206, 242, 518
FalI	AAGNNNNNCTT	4 cut(s)	81, 113, 410, 442
FaqI	GGGAC	2 cut(s)	536, 688
FatI	CATG	3 cut(s)	202, 238, 514
FauI	CCCGC	1 cut(s)	867
Fnu4HI	GCNGC	2 cut(s)	381, 637
FokI	GGATG	3 cut(s)	278, 548, 734
Fsp4HI	GCNGC	2 cut(s)	381, 637
FspBI	CTAG	6 cut(s)	303, 473, 507, 884, 963, 1197
GluI	GCNGC	2 cut(s)	381, 637
GsuI	CTGGAG	2 cut(s)	63, 306
HaeIII	GGCC	3 cut(s)	174, 315, 1149
HapII	CCGG	3 cut(s)	604, 957, 980
HgaI	GACGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	206, 242, 518
HinfI	GANTC	6 cut(s)	699, 949, 976, 1000, 1043, 1181
HpaII	CCGG	3 cut(s)	604, 957, 980
HphI	GGTGA	5 cut(s)	222, 376, 464, 611, 1065
Hpy166II	GTNNAC	3 cut(s)	53, 1052, 1165
Hpy188I	TCNGA	6 cut(s)	165, 459, 948, 997, 1066, 1186
Hpy188III	TCNNGA	8 cut(s)	80, 507, 562, 666, 743, 791, 797, 845
Hpy8I	GTNNAC	3 cut(s)	53, 1052, 1165
Hpy99I	CGWCG	1 cut(s)	426
HpyAV	CCTTC	5 cut(s)	128, 326, 504, 1131, 1230
HpyCH4III	ACNGT	3 cut(s)	142, 407, 988
HpyCH4IV	ACGT	2 cut(s)	169, 227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 875, 880
HpyF3I	CTNAG	2 cut(s)	129, 996
HpySE526I	ACGT	2 cut(s)	169, 227
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	206, 242, 518
Kzo9I	GATC	4 cut(s)	145, 454, 496, 793
LmnI	GCTCC	4 cut(s)	67, 636, 959, 1033
Lsp1109I	GCAGC	2 cut(s)	392, 623
LweI	GCATC	6 cut(s)	256, 295, 335, 367, 526, 1104
MaeI	CTAG	6 cut(s)	303, 473, 507, 884, 963, 1197
MaeII	ACGT	2 cut(s)	169, 227
MaeIII	GTNAC	6 cut(s)	228, 351, 401, 599, 663, 913
MalI	GATC	4 cut(s)	147, 456, 498, 795
MboI	GATC	4 cut(s)	145, 454, 496, 793
MboII	GAAGA	7 cut(s)	101, 113, 371, 593, 812, 860, 984
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	3 cut(s)	72, 1054, 1179
MluCI	AATT	7 cut(s)	335, 612, 773, 806, 828, 1125, 1138
MlyI	GAGTC	1 cut(s)	1175
MmeI	TCCRAC	1 cut(s)	1209
Mph1103I	ATGCAT	2 cut(s)	271, 1061
MseI	TTAA	3 cut(s)	117, 765, 926
MspA1I	CMGCKG	1 cut(s)	636
MspI	CCGG	3 cut(s)	604, 957, 980
MspR9I	CCNGG	2 cut(s)	192, 981
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	3 cut(s)	216, 875, 880
NciI	CCSGG	1 cut(s)	981
NdeII	GATC	4 cut(s)	145, 454, 496, 793
NlaIII	CATG	3 cut(s)	206, 242, 518
NlaIV	GGNNCC	2 cut(s)	498, 632
NmeAIII	GCCGAG	1 cut(s)	925
NmuCI	GTSAC	4 cut(s)	228, 351, 599, 663
NsiI	ATGCAT	2 cut(s)	271, 1061
NspI	RCATGY	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	315
PfeI	GAWTC	5 cut(s)	699, 949, 976, 1000, 1043
PfoI	TCCNGGA	1 cut(s)	979
PkrI	GCNGC	2 cut(s)	382, 638
PleI	GAGTC	1 cut(s)	1175
PpsI	GAGTC	1 cut(s)	1175
Ppu21I	YACGTR	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	1239
Psp5II	RGGWCCY	1 cut(s)	1239
Psp6I	CCWGG	1 cut(s)	190
PspEI	GGTNACC	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	498, 632
PspPI	GGNCC	1 cut(s)	1239
PspPPI	RGGWCCY	1 cut(s)	1239
PsuI	RGATCY	1 cut(s)	496
SaqAI	TTAA	3 cut(s)	117, 765, 926
SatI	GCNGC	2 cut(s)	381, 637
Sau3AI	GATC	4 cut(s)	145, 454, 496, 793
Sau96I	GGNCC	1 cut(s)	1239
SchI	GAGTC	1 cut(s)	1175
ScrFI	CCNGG	2 cut(s)	192, 981
SduI	GDGCHC	3 cut(s)	72, 1054, 1179
SfaNI	GCATC	6 cut(s)	256, 295, 335, 367, 526, 1104
SinI	GGWCC	1 cut(s)	1239
SmiI	ATTTAAAT	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	245, 427
SmoI	CTYRAG	2 cut(s)	245, 427
SpeI	ACTAGT	1 cut(s)	1196
Sse9I	AATT	7 cut(s)	335, 612, 773, 806, 828, 1125, 1138
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	3 cut(s)	634, 782, 874
SspI	AATATT	1 cut(s)	1099
SspMI	CTAG	6 cut(s)	303, 473, 507, 884, 963, 1197
StuI	AGGCCT	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	190, 979
SwaI	ATTTAAAT	1 cut(s)	766
TaaI	ACNGT	3 cut(s)	142, 407, 988
TaiI	ACGT	2 cut(s)	172, 230
TaqI	TCGA	2 cut(s)	575, 1179
TaqII	GACCGA	1 cut(s)	1196
TasI	AATT	7 cut(s)	335, 612, 773, 806, 828, 1125, 1138
TfiI	GAWTC	5 cut(s)	699, 949, 976, 1000, 1043
Tru1I	TTAA	3 cut(s)	117, 765, 926
Tru9I	TTAA	3 cut(s)	117, 765, 926
TscAI	CASTG	2 cut(s)	360, 412
TseFI	GTSAC	4 cut(s)	228, 351, 599, 663
TseI	GCWGC	2 cut(s)	380, 636
Tsp45I	GTSAC	4 cut(s)	228, 351, 599, 663
TspDTI	ATGAA	8 cut(s)	102, 362, 431, 492, 673, 738, 819, 1056
TspRI	CASTG	2 cut(s)	360, 412
VneI	GTGCAC	1 cut(s)	1050
VpaK11BI	GGWCC	1 cut(s)	1239
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	3 cut(s)	773, 806, 1138
XbaI	TCTAGA	1 cut(s)	506
XceI	RCATGY	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XspI	CTAG	6 cut(s)	303, 473, 507, 884, 963, 1197
ZraI	GACGTC	1 cut(s)	228
Zsp2I	ATGCAT	2 cut(s)	271, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.