Rorug05G0336100

ABC transporter A family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
40784780 .. 40789627
4848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0336100.1

Sequence Viewer

Length: 330 bp
ATGATGTCAAGACCAGTGTTGCTTGTTTTTCTGCTTGTTGTTCTCATAATCACTTCCCAGTTTGAGTGGAAGCAACAACTTGTCCCTGACCTTGATGCAACTCCAAGTATTTCCCAAAAGCCAAGTCAGAGCTCAAAGAGGGAAGAAGCTGTAAAAGAGAAGATCATATTATTGCAAGAAAAGAACATTAAGAGACTCAATGAGATTGTCCATAGCCTTAGGGAACAGTTGCGACGGTGTAAAAGCAAGAATGAGACAAGGCAGCACAGCGTAAGTTTCCTATCTGAACATGTTACAGAAATTGAACAACATCAGATATTCGAGGACTAG

Protein Analysis

109

Amino Acids

12.83

Weight (kDa)

7.93

Isoelectric Point (pI)

78.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 2 cut(s) 132, 149
AluI AGCT 2 cut(s) 132, 149
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 187, 248
ApeKI GCWGC 1 cut(s) 262
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
AxyI CCTNAGG 1 cut(s) 218
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 187, 248
BfaI CTAG 1 cut(s) 328
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 14, 58
Bse21I CCTNAGG 1 cut(s) 218
BseNI ACTGG 2 cut(s) 14, 58
BseXI GCAGC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 187, 248
BsmFI GGGAC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 162
BsrI ACTGG 2 cut(s) 14, 58
BssMI GATC 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 228, 237
BstDEI CTNAG 1 cut(s) 218
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 2 cut(s) 187, 248
BstMBI GATC 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 21
CviAII CATG 1 cut(s) 290
CviJI RGCY 4 cut(s) 121, 132, 149, 216
CviKI_1 RGCY 4 cut(s) 121, 132, 149, 216
DdeI CTNAG 1 cut(s) 218
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 134
FaeI CATG 1 cut(s) 293
FaiI YATR 4 cut(s) 47, 167, 213, 291
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 328
GluI GCNGC 1 cut(s) 263
Hin1II CATG 1 cut(s) 293
HinfI GANTC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 129, 286, 315
Hpy188III TCNNGA 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 237
HpyCH4III ACNGT 2 cut(s) 228, 237
HpyCH4V TGCA 2 cut(s) 98, 175
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 3 cut(s) 27, 71, 99
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 292
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 2 cut(s) 155, 172
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 1 cut(s) 300
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 2 cut(s) 132, 316
MseI TTAA 1 cut(s) 189
NdeII GATC 1 cut(s) 162
NlaIII CATG 1 cut(s) 293
NspI RCATGY 1 cut(s) 293
PciI ACATGT 1 cut(s) 289
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PscI ACATGT 1 cut(s) 289
Psp124BI GAGCTC 1 cut(s) 134
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 162
SchI GAGTC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 134
SetI ASST 3 cut(s) 93, 134, 151
SfaNI GCATC 1 cut(s) 85
Sse9I AATT 1 cut(s) 300
SspMI CTAG 1 cut(s) 328
SstI GAGCTC 1 cut(s) 134
TaaI ACNGT 2 cut(s) 228, 237
TaqI TCGA 1 cut(s) 321
TasI AATT 1 cut(s) 300
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 262
TspRI CASTG 1 cut(s) 21
XceI RCATGY 1 cut(s) 293
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.