Rmu_sc0001534.1_g000009

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001534.1
OG0000289
Physical Location & Seq
Reverse (-)
23271 .. 24647
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001534.1_g000009.1.cds

Sequence Viewer

Length: 1272 bp
atggcttcggagaactcaccatcaccactattggaattgcccgactttcctgggggagctgatggatttttgtatatttacaagttgtgttatggaatcagaggtccactcactgcttcaaactctctccctttcctctgtgcggctgattatctggacctgaaggatgaactaatttcacaaactatgagctatctttctgaaggcgcactgtatgagaatggggaaacatgtgcagagattttgaagcattgcgatgaccatatgattcgagagtatgccaaaacatctctgattgcacagagatgtatcaagaccattgactcccatgtgtcaaagtattttctcaggagacacctacccgaaggagtaggagatgaggctaagaaagcattgcttgaagcagttgctcctttgtatttgagtcaagtgtgtcaaccaccagatgttaaacgcctgattcgcctacacagggctgcagtatctcttgaggcttcccaagaatgtttgaaatgccttgagcattgtatcggtgcacatcttcatgaagtttctgcagaagctttgtgtggaagccatcattttgacagcaacacggttcatcgccttgtcaaccattatctccgcaagcatgagggtggtgaagagattgtcgctgatgataatcaaatagttcctgaaagcacagtcgtggtggctaatcttgttgataagtacctcctggaaaaggttgctaatttgtcagtggctcaatttcaagaattagccgcctcagtccgccatgctagagctgtggatgacaatctctattttgctattactttgtatctacagtaccaccctaacttggctgaaccagagagagagcagatatgtcaatctttgaattgcgaaaatctcactcctgaagttcggattcaagcagcaaacagccgtaatttacccttgcgaacagttgttgagcttttctatctcaacaaccaggagcttaaggatgaagttgaagagcataagaaccggatttcttatcttgagagtgtgatcatggagatgaatgaagtcattgagaatctaaggaaagaagtggagaagttgggcagtgggaattcaaaaggatcaaacaagtggacaaccatgtctaagaaattgggcttcagcaagaagcctctgcaactggggtgtcgtacaagtcaggatgcagtgcacaacccaaaccctaggaggaaggacaacattctaccggaaaatacagactcctcctctgaggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

423

Amino Acids

47.58

Weight (kDa)

5.56

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
Image
Tree File
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1135
AciI CCGC 4 cut(s) 143, 625, 768, 778
AclWI GGATC 1 cut(s) 1123
AcsI RAATTY 1 cut(s) 1105
AcuI CTGAAG 4 cut(s) 182, 222, 927, 1138
AfaI GTAC 3 cut(s) 716, 836, 1186
AfiI CCNNNNNNNGG 4 cut(s) 142, 472, 727, 847
AflII CTTAAG 1 cut(s) 989
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 9 cut(s) 120, 247, 401, 511, 758, 886, 920, 1004, 1110
AjnI CCWGG 3 cut(s) 49, 720, 981
AleI CACNNNNGTG 1 cut(s) 689
AluBI AGCT 6 cut(s) 59, 192, 563, 791, 964, 988
AluI AGCT 6 cut(s) 59, 192, 563, 791, 964, 988
Alw21I GWGCWC 2 cut(s) 538, 1206
Alw26I GTCTC 1 cut(s) 346
Alw44I GTGCAC 2 cut(s) 534, 1202
AlwI GGATC 1 cut(s) 1123
ApaLI GTGCAC 2 cut(s) 534, 1202
ApeKI GCWGC 2 cut(s) 476, 923
ApoI RAATTY 1 cut(s) 1105
AspA2I CCTAGG 1 cut(s) 1217
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 2 cut(s) 104, 157
AsuHPI GGTGA 3 cut(s) 9, 15, 653
AvaII GGWCC 2 cut(s) 104, 157
AvrII CCTAGG 1 cut(s) 1217
BaeGI GKGCMC 2 cut(s) 538, 1206
Bbv12I GWGCWC 2 cut(s) 538, 1206
BbvI GCAGC 2 cut(s) 463, 935
BccI CCATC 3 cut(s) 28, 56, 585
BceAI ACGGC 1 cut(s) 918
BciT130I CCWGG 3 cut(s) 51, 722, 983
BclI TGATCA 1 cut(s) 1041
BcoDI GTCTC 1 cut(s) 346
BfaI CTAG 2 cut(s) 786, 1218
BfmI CTRYAG 3 cut(s) 477, 555, 830
BfrI CTTAAG 1 cut(s) 989
BisI GCNGC 4 cut(s) 144, 477, 768, 924
BlnI CCTAGG 1 cut(s) 1217
BlsI GCNGC 4 cut(s) 145, 478, 769, 925
Bme1390I CCNGG 3 cut(s) 51, 722, 983
Bme18I GGWCC 2 cut(s) 104, 157
BmgT120I GGNCC 2 cut(s) 104, 157
BmrFI CCNGG 3 cut(s) 51, 722, 983
BmrI ACTGGG 1 cut(s) 1184
BmsI GCATC 1 cut(s) 1186
BmuI ACTGGG 1 cut(s) 1184
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpuEI CTTGAG 3 cut(s) 509, 539, 1052
BsaBI GATNNNNATC 2 cut(s) 663, 801
BsaJI CCNNGG 2 cut(s) 50, 1217
BsaWI WCCGGW 2 cut(s) 1017, 1240
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 472, 727, 847
Bse1I ACTGG 1 cut(s) 1179
Bse3DI GCAATG 2 cut(s) 250, 392
Bse8I GATNNNNATC 2 cut(s) 663, 801
BseBI CCWGG 3 cut(s) 51, 722, 983
BseDI CCNNGG 2 cut(s) 50, 1217
BseGI GGATG 4 cut(s) 172, 802, 1000, 1201
BseJI GATNNNNATC 2 cut(s) 663, 801
BseLI CCNNNNNNNGG 4 cut(s) 142, 472, 727, 847
BseMI GCAATG 2 cut(s) 250, 392
BseMII CTCAG 3 cut(s) 361, 786, 1254
BseNI ACTGG 1 cut(s) 1179
BseRI GAGGAG 2 cut(s) 1246, 1249
BseSI GKGCMC 2 cut(s) 538, 1206
BseXI GCAGC 2 cut(s) 463, 935
BsgI GTGCAG 1 cut(s) 255
BsiHKAI GWGCWC 2 cut(s) 538, 1206
BsiSI CCGG 2 cut(s) 1018, 1241
BslI CCNNNNNNNGG 4 cut(s) 142, 472, 727, 847
BsmAI GTCTC 1 cut(s) 346
Bsp1286I GDGCHC 2 cut(s) 538, 1206
Bsp143I GATC 2 cut(s) 1041, 1115
BspACI CCGC 4 cut(s) 143, 625, 768, 778
BspCNI CTCAG 3 cut(s) 360, 785, 1255
BspHI TCATGA 1 cut(s) 544
BspMAI CTGCAG 2 cut(s) 481, 559
BspPI GGATC 1 cut(s) 1123
BspQI GCTCTTC 1 cut(s) 999
BspTI CTTAAG 1 cut(s) 989
BsrDI GCAATG 2 cut(s) 250, 392
BsrI ACTGG 1 cut(s) 1179
BssECI CCNNGG 2 cut(s) 50, 1217
BssMI GATC 2 cut(s) 1041, 1115
BssT1I CCWWGG 1 cut(s) 1217
Bst2UI CCWGG 3 cut(s) 51, 722, 983
Bst4CI ACNGT 5 cut(s) 213, 598, 688, 834, 955
Bst6I CTCTTC 2 cut(s) 639, 999
BstAFI CTTAAG 1 cut(s) 989
BstC8I GCNNGC 1 cut(s) 629
BstDEI CTNAG 6 cut(s) 347, 384, 772, 1073, 1140, 1263
BstENI CCTNNNNNAGG 1 cut(s) 725
BstF5I GGATG 4 cut(s) 172, 802, 1000, 1201
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 2 cut(s) 1044, 1118
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 2 cut(s) 1041, 1115
BstMWI GCNNNNNNNGC 2 cut(s) 389, 462
BstNI CCWGG 3 cut(s) 51, 722, 983
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 3 cut(s) 49, 720, 981
BstSFI CTRYAG 3 cut(s) 477, 555, 830
BstSLI GKGCMC 2 cut(s) 538, 1206
BstV1I GCAGC 2 cut(s) 463, 935
BtgZI GCGATG 2 cut(s) 270, 587
BtsCI GGATG 4 cut(s) 172, 802, 1000, 1201
BtsI GCAGTG 3 cut(s) 111, 1105, 1206
BtsIMutI CAGTG 5 cut(s) 111, 209, 750, 1105, 1206
Cac8I GCNNGC 1 cut(s) 629
CciI TCATGA 1 cut(s) 544
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 104, 157
Csp6I GTAC 3 cut(s) 715, 835, 1185
CviAII CATG 7 cut(s) 231, 329, 545, 632, 782, 1045, 1135
CviQI GTAC 3 cut(s) 715, 835, 1185
DdeI CTNAG 6 cut(s) 347, 384, 772, 1073, 1140, 1263
DpnI GATC 2 cut(s) 1043, 1117
DpnII GATC 2 cut(s) 1041, 1115
DrdI GACNNNNNNGTC 1 cut(s) 1135
DseDI GACNNNNNNGTC 1 cut(s) 1135
Eam1104I CTCTTC 2 cut(s) 639, 999
EarI CTCTTC 2 cut(s) 639, 999
EciI GGCGGA 1 cut(s) 767
Eco130I CCWWGG 1 cut(s) 1217
Eco47I GGWCC 2 cut(s) 104, 157
Eco57I CTGAAG 4 cut(s) 182, 222, 927, 1138
EcoNI CCTNNNNNAGG 1 cut(s) 725
EcoRI GAATTC 1 cut(s) 1105
EcoRII CCWGG 3 cut(s) 49, 720, 981
EcoT14I CCWWGG 1 cut(s) 1217
ErhI CCWWGG 1 cut(s) 1217
FaeI CATG 7 cut(s) 234, 332, 548, 635, 785, 1048, 1138
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FatI CATG 7 cut(s) 230, 328, 544, 631, 781, 1044, 1134
FauNDI CATATG 1 cut(s) 264
FbaI TGATCA 1 cut(s) 1041
Fnu4HI GCNGC 4 cut(s) 144, 477, 768, 924
FokI GGATG 4 cut(s) 179, 809, 1007, 1208
Fsp4HI GCNGC 4 cut(s) 144, 477, 768, 924
FspBI CTAG 2 cut(s) 786, 1218
GlaI GCGC 1 cut(s) 208
GluI GCNGC 4 cut(s) 144, 477, 768, 924
HapII CCGG 2 cut(s) 1018, 1241
HhaI GCGC 1 cut(s) 209
Hin1II CATG 7 cut(s) 234, 332, 548, 635, 785, 1048, 1138
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HincII GTYRAC 2 cut(s) 437, 613
HindII GTYRAC 2 cut(s) 437, 613
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 8 cut(s) 96, 268, 323, 424, 460, 916, 1069, 1253
HpaII CCGG 2 cut(s) 1018, 1241
HphI GGTGA 3 cut(s) 9, 15, 653
Hpy166II GTNNAC 6 cut(s) 107, 437, 536, 613, 1128, 1204
Hpy188I TCNGA 6 cut(s) 10, 101, 202, 294, 915, 1264
Hpy8I GTNNAC 6 cut(s) 107, 437, 536, 613, 1128, 1204
HpyAV CCTTC 4 cut(s) 157, 197, 359, 1219
HpyCH4III ACNGT 5 cut(s) 213, 598, 688, 834, 955
HpyCH4V TGCA 8 cut(s) 236, 299, 479, 536, 557, 1171, 1199, 1204
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 462
HpyF3I CTNAG 6 cut(s) 347, 384, 772, 1073, 1140, 1263
Hsp92II CATG 7 cut(s) 234, 332, 548, 635, 785, 1048, 1138
HspAI GCGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 1041
Kzo9I GATC 2 cut(s) 1041, 1115
LguI GCTCTTC 1 cut(s) 999
LmnI GCTCC 3 cut(s) 56, 415, 985
Lsp1109I GCAGC 2 cut(s) 463, 935
LweI GCATC 1 cut(s) 1186
MaeI CTAG 2 cut(s) 786, 1218
MalI GATC 2 cut(s) 1043, 1117
MboI GATC 2 cut(s) 1041, 1115
MboII GAAGA 3 cut(s) 533, 656, 1016
MhlI GDGCHC 2 cut(s) 538, 1206
MluCI AATT 9 cut(s) 35, 174, 736, 752, 761, 886, 937, 1105, 1145
MlyI GAGTC 3 cut(s) 317, 433, 1247
MseI TTAA 2 cut(s) 450, 990
MslI CAYNNNNRTG 6 cut(s) 255, 304, 543, 636, 689, 1049
MspCI CTTAAG 1 cut(s) 989
MspI CCGG 2 cut(s) 1018, 1241
MspR9I CCNGG 3 cut(s) 51, 722, 983
MvaI CCWGG 3 cut(s) 51, 722, 983
MwoI GCNNNNNNNGC 2 cut(s) 389, 462
NdeI CATATG 1 cut(s) 264
NdeII GATC 2 cut(s) 1041, 1115
NlaIII CATG 7 cut(s) 234, 332, 548, 635, 785, 1048, 1138
NspI RCATGY 1 cut(s) 234
OliI CACNNNNGTG 1 cut(s) 689
PagI TCATGA 1 cut(s) 544
PciI ACATGT 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 999
PfeI GAWTC 5 cut(s) 96, 268, 460, 916, 1069
PfoI TCCNGGA 1 cut(s) 720
PkrI GCNGC 4 cut(s) 145, 478, 769, 925
PleI GAGTC 3 cut(s) 317, 432, 1247
PpsI GAGTC 3 cut(s) 317, 432, 1247
PscI ACATGT 1 cut(s) 230
Psp6I CCWGG 3 cut(s) 49, 720, 981
PspGI CCWGG 3 cut(s) 49, 720, 981
PspPI GGNCC 2 cut(s) 104, 157
PstI CTGCAG 2 cut(s) 481, 559
RsaI GTAC 3 cut(s) 716, 836, 1186
RsaNI GTAC 3 cut(s) 715, 835, 1185
RseI CAYNNNNRTG 6 cut(s) 255, 304, 543, 636, 689, 1049
SapI GCTCTTC 1 cut(s) 999
SaqAI TTAA 2 cut(s) 450, 990
SatI GCNGC 4 cut(s) 144, 477, 768, 924
Sau3AI GATC 2 cut(s) 1041, 1115
Sau96I GGNCC 2 cut(s) 104, 157
SchI GAGTC 3 cut(s) 317, 433, 1247
ScrFI CCNGG 3 cut(s) 51, 722, 983
SduI GDGCHC 2 cut(s) 538, 1206
SfaNI GCATC 1 cut(s) 1186
SfcI CTRYAG 3 cut(s) 477, 555, 830
SinI GGWCC 2 cut(s) 104, 157
SmiMI CAYNNNNRTG 6 cut(s) 255, 304, 543, 636, 689, 1049
SmlI CTYRAG 4 cut(s) 488, 518, 989, 1031
SmoI CTYRAG 4 cut(s) 488, 518, 989, 1031
Sse9I AATT 9 cut(s) 35, 174, 736, 752, 761, 886, 937, 1105, 1145
SsiI CCGC 4 cut(s) 143, 625, 768, 778
SspMI CTAG 2 cut(s) 786, 1218
StyD4I CCNGG 3 cut(s) 49, 720, 981
StyI CCWWGG 1 cut(s) 1217
TaaI ACNGT 5 cut(s) 213, 598, 688, 834, 955
TaqI TCGA 1 cut(s) 271
TasI AATT 9 cut(s) 35, 174, 736, 752, 761, 886, 937, 1105, 1145
TauI GCSGC 2 cut(s) 146, 770
TfiI GAWTC 5 cut(s) 96, 268, 460, 916, 1069
Tru1I TTAA 2 cut(s) 450, 990
Tru9I TTAA 2 cut(s) 450, 990
TscAI CASTG 5 cut(s) 118, 216, 750, 1105, 1206
TseI GCWGC 2 cut(s) 476, 923
TspDTI ATGAA 7 cut(s) 183, 533, 561, 590, 1011, 1067, 1071
TspRI CASTG 5 cut(s) 118, 216, 750, 1105, 1206
Vha464I CTTAAG 1 cut(s) 989
VneI GTGCAC 2 cut(s) 534, 1202
VpaK11BI GGWCC 2 cut(s) 104, 157
XagI CCTNNNNNAGG 1 cut(s) 725
XapI RAATTY 1 cut(s) 1105
XceI RCATGY 1 cut(s) 234
XmaJI CCTAGG 1 cut(s) 1217
XspI CTAG 2 cut(s) 786, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.