Rw0G008940

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00346
OG0000289
Physical Location & Seq
Forward (+)
53108 .. 53995
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008940.1

Sequence Viewer

Length: 537 bp
ATGCGTTGTCGGTGTGTTTGCAAGTCATGGTTTGATTTCGTCACCAGCAACCGTTTATTTCAAAGCATCCACCTAAATGTAAAAGTTCCGCAGAATCTCAAATATATGTATTATGCTAATGGCTTGGTGTTGGGCTATTGTTGTCAATATGGTGTTCCCATTTTCATAGTTAATCCCTTAACCAGAAAGTCTATTTCCATTCCGTTTTTTACACTGGGTACGGGTTTATGGAGGAACTTAGAGGTAGACTGGGATGCACTCTCATTGGATCCTCTTCAATCTTGGGACTTCCATCGTACTAAAAGCGTATATGAGAGATTCAGAGTCATTCCACTTCCTCAAGTTGAAGCGGACGATAAGTTGCAGATTATTGAAGTAGATGGATGTCTAGACGTAGTGTGTGACTGGAAACTACAACAGATGGTGTTATGGATTTTGAAGGACTACGAAAAGCATGTCTGGGTTAAGGAGACTATTAAGTCTTTCCCTCCAGGGTACCCGGTTGTCAAATCTCCTCAATGTACCAACCACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

178

Amino Acids

20.92

Weight (kDa)

8.39

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 478
Acc65I GGTACC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 246
AciI CCGC 2 cut(s) 89, 350
AclWI GGATC 2 cut(s) 263, 276
AfaI GTAC 4 cut(s) 220, 298, 497, 523
AgsI TTSAA 5 cut(s) 62, 278, 347, 374, 439
AjnI CCWGG 1 cut(s) 490
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 2 cut(s) 263, 276
ArsI GACNNNNNNTTYG 2 cut(s) 441, 473
Asp718I GGTACC 1 cut(s) 495
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 34
BamHI GGATCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 495
BccI CCATC 3 cut(s) 300, 374, 415
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 1 cut(s) 389
Bme1390I CCNGG 2 cut(s) 492, 500
BmiI GGNNCC 2 cut(s) 270, 497
BmrFI CCNGG 2 cut(s) 492, 500
BmrI ACTGGG 2 cut(s) 224, 259
BmsI GCATC 2 cut(s) 75, 244
BmuI ACTGGG 2 cut(s) 224, 259
BpmI CTGGAG 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 491
Bse1I ACTGG 3 cut(s) 219, 254, 410
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 3 cut(s) 66, 259, 389
BseNI ACTGG 3 cut(s) 219, 254, 410
BseRI GAGGAG 1 cut(s) 504
BshNI GGYRCC 1 cut(s) 495
BsiSI CCGG 1 cut(s) 500
BslFI GGGAC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 2 cut(s) 89, 350
BspLI GGNNCC 2 cut(s) 270, 497
BspPI GGATC 2 cut(s) 263, 276
BspT107I GGYRCC 1 cut(s) 495
BsrI ACTGG 3 cut(s) 219, 254, 410
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 279
BstDEI CTNAG 1 cut(s) 238
BstF5I GGATG 3 cut(s) 66, 259, 389
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 490, 498
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtsCI GGATG 3 cut(s) 66, 259, 389
BtsIMutI CAGTG 1 cut(s) 212
Csp6I GTAC 4 cut(s) 219, 297, 496, 522
CviAII CATG 2 cut(s) 27, 455
CviJI RGCY 2 cut(s) 123, 135
CviKI_1 RGCY 2 cut(s) 123, 135
CviQI GTAC 4 cut(s) 219, 297, 496, 522
DdeI CTNAG 1 cut(s) 238
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
DrdI GACNNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 490
FaeI CATG 2 cut(s) 30, 458
FaqI GGGAC 1 cut(s) 299
FatI CATG 2 cut(s) 26, 454
FblI GTMKAC 1 cut(s) 246
FokI GGATG 3 cut(s) 53, 266, 396
FspBI CTAG 1 cut(s) 389
GsuI CTGGAG 1 cut(s) 474
HapII CCGG 1 cut(s) 500
Hin1II CATG 2 cut(s) 30, 458
HinfI GANTC 3 cut(s) 94, 318, 324
HpaII CCGG 1 cut(s) 500
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 3 cut(s) 21, 257, 364
HpyF3I CTNAG 1 cut(s) 238
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 2 cut(s) 30, 458
KpnI GGTACC 1 cut(s) 499
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 9 cut(s) 58, 196, 200, 235, 391, 445, 477, 504, 513
LweI GCATC 2 cut(s) 75, 244
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 40, 401
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 1 cut(s) 266
MflI RGATCY 1 cut(s) 268
MlyI GAGTC 1 cut(s) 333
MnlI CCTC 6 cut(s) 225, 235, 282, 348, 498, 525
MseI TTAA 4 cut(s) 171, 179, 465, 477
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 1 cut(s) 500
MspR9I CCNGG 2 cut(s) 492, 500
MvaI CCWGG 1 cut(s) 492
NciI CCSGG 1 cut(s) 500
NdeII GATC 1 cut(s) 268
NlaIII CATG 2 cut(s) 30, 458
NlaIV GGNNCC 2 cut(s) 270, 497
NmuCI GTSAC 2 cut(s) 40, 401
NspI RCATGY 1 cut(s) 458
PfeI GAWTC 2 cut(s) 94, 318
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 270, 497
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 4 cut(s) 220, 298, 497, 523
RsaNI GTAC 4 cut(s) 219, 297, 496, 522
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 4 cut(s) 171, 179, 465, 477
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 2 cut(s) 492, 500
SetI ASST 3 cut(s) 75, 246, 396
SfaNI GCATC 2 cut(s) 75, 244
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
SsiI CCGC 2 cut(s) 89, 350
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 2 cut(s) 490, 498
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 396
TfiI GAWTC 2 cut(s) 94, 318
Tru1I TTAA 4 cut(s) 171, 179, 465, 477
Tru9I TTAA 4 cut(s) 171, 179, 465, 477
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 2 cut(s) 40, 401
Tsp45I GTSAC 2 cut(s) 40, 401
TspDTI ATGAA 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 219
XbaI TCTAGA 1 cut(s) 388
XceI RCATGY 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.