FvH4_5g31290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000289
Physical Location & Seq
Forward (+)
22202880 .. 22203134
255 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31290.t1

Sequence Viewer

Length: 255 bp
ATGCTTGTTCATAATGCATATTGCACTACAACCAGCTGTGATGAACATGACATGATTTATGTCATAAACCCTTGCACTCAGAAGTACTACAAACTTATTCCCCATGCAATGTATGGAAGAACCCACCGCATATACCACTTCGGCTTCTGTACTTCAGGGAATAACAAGTACTACAAGGTCCTGCAAGTTGAAAAGACCCTAGACAAGAAATGTGCGTTCAATAATTTCACAATGGGTTCAACTCCTAACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.8

Weight (kDa)

8.84

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 3 cut(s) 86, 151, 170
AgsI TTSAA 3 cut(s) 191, 220, 240
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 178
AvaII GGWCC 1 cut(s) 178
BfaI CTAG 1 cut(s) 200
BmcAI AGTACT 2 cut(s) 86, 170
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 92
BspACI CCGC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 78
CciI TCATGA 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 85, 150, 169
CviAII CATG 4 cut(s) 47, 52, 104, 252
CviJI RGCY 2 cut(s) 36, 144
CviKI_1 RGCY 2 cut(s) 36, 144
CviQI GTAC 3 cut(s) 85, 150, 169
DdeI CTNAG 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 19
FaeI CATG 4 cut(s) 50, 55, 107, 255
FatI CATG 4 cut(s) 46, 51, 103, 251
FspBI CTAG 1 cut(s) 200
Hin1II CATG 4 cut(s) 50, 55, 107, 255
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 252
HpyCH4V TGCA 5 cut(s) 17, 24, 75, 107, 184
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 4 cut(s) 50, 55, 107, 255
LpnPI CCDG 3 cut(s) 46, 141, 194
MaeI CTAG 1 cut(s) 200
MboII GAAGA 1 cut(s) 129
MluCI AATT 1 cut(s) 223
Mph1103I ATGCAT 1 cut(s) 19
MspA1I CMGCKG 1 cut(s) 36
NlaIII CATG 4 cut(s) 50, 55, 107, 255
NsiI ATGCAT 1 cut(s) 19
PagI TCATGA 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 178
PspPI GGNCC 1 cut(s) 178
PspPPI RGGWCCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 36
RsaI GTAC 3 cut(s) 86, 151, 170
RsaNI GTAC 3 cut(s) 85, 150, 169
Sau96I GGNCC 1 cut(s) 178
ScaI AGTACT 2 cut(s) 86, 170
SetI ASST 2 cut(s) 38, 180
SinI GGWCC 1 cut(s) 178
Sse9I AATT 1 cut(s) 223
SsiI CCGC 1 cut(s) 127
SspMI CTAG 1 cut(s) 200
TasI AATT 1 cut(s) 223
TatI WGTACW 3 cut(s) 84, 149, 168
TspDTI ATGAA 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XspI CTAG 1 cut(s) 200
ZrmI AGTACT 2 cut(s) 86, 170
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.