RLG00000006379

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000289
Physical Location & Seq
Forward (+)
6620174 .. 6620988
815 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006379

Sequence Viewer

Length: 729 bp
ATGGAGGTTGATCTTCCAAATCTCCCAAGCGACATCATATCGTTTCAGATCCTCACAAGGCTACCAGCCAAGTCCTTGATGCGTTTCAAGTGCGTGTGCAAGTCTTGGTCCTCTTCCCTCTTCCGCGATCCATTCTTTGTCAAGGCTGACCAGAACATGCACAACAGTCGCAACAACAACCACAAAACTACTCACCTCCTCCTCAGCAACTGGGACATAACAACAGGACAGCGAATTAATGTTGCTCTCCATGCAATTCAACCAAGAATTAGGTTTCTCAATATGCTTCAAAGTCCGGCTCCGACTCTGGGTGGACAGTCTTATAGCGGGTTCTGTCCTCTTACAAACGAGTACAAGGTTTTCCGTGTGGATGTGCATCTTCCTTCAGAGACAATAAGGAGGAGTAGTTTCATGTTCGAGATTTTCAGTCTGGGTAGTACAAGTAATTCATGGAGGGATGTACAAAACATAGGCCTCGATGATCTCGATCTGGATGCTGCAGCTATAGCCTACTTTAATCGTAGAAATGTGTGCATCCATGGGGCCATGCATTGGGCGGTAAGGAATAGGAAGGGTAAAACTATCATCTTGGCTTTTGATGTCGGAGAAGAGACATTCAGAGTAATTCCACTTCCTCAAGATTATGAACACTGTTACGCCGGTTACATAATCGAAGTGCATGGATATGTGGCTATATTTGGCCACGACTTGGGGCTTGTTACGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

243

Amino Acids

27.59

Weight (kDa)

8.29

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 46 1e-06 F-box domain
FBA_3 PF08268 106 - 236 2.1e-14 F-box associated beta propeller domain
FBA_1 PF07734 116 - 218 1.9e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 552, 709
AccII CGCG 1 cut(s) 126
AciI CCGC 3 cut(s) 124, 327, 557
AclWI GGATC 2 cut(s) 43, 122
AcoI YGGCCR 1 cut(s) 700
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 3 cut(s) 353, 439, 462
AfiI CCNNNNNNNGG 3 cut(s) 308, 552, 709
AgsI TTSAA 3 cut(s) 88, 260, 290
AluBI AGCT 1 cut(s) 503
AluI AGCT 1 cut(s) 503
Alw26I GTCTC 2 cut(s) 383, 605
AlwI GGATC 2 cut(s) 43, 122
AlwNI CAGNNNCTG 1 cut(s) 210
AoxI GGCC 3 cut(s) 472, 543, 700
ApeKI GCWGC 2 cut(s) 497, 500
AseI ATTAAT 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 108, 543
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 702
BarI GAAGNNNNNNTAC 2 cut(s) 615, 647
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 2 cut(s) 484, 512
BcgI CGANNNNNNTGC 4 cut(s) 149, 183, 476, 510
BcoDI GTCTC 2 cut(s) 383, 605
BfmI CTRYAG 2 cut(s) 498, 504
BisI GCNGC 2 cut(s) 498, 501
BlsI GCNGC 2 cut(s) 499, 502
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 108, 543
BmiI GGNNCC 2 cut(s) 300, 544
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 4 cut(s) 69, 385, 484, 543
BmuI ACTGGG 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 621
BsaBI GATNNNNATC 2 cut(s) 375, 486
BsaJI CCNNGG 1 cut(s) 538
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 552, 709
Bse118I RCCGGY 1 cut(s) 659
Bse1I ACTGG 1 cut(s) 215
Bse8I GATNNNNATC 2 cut(s) 375, 486
BseDI CCNNGG 1 cut(s) 538
BseGI GGATG 4 cut(s) 376, 463, 499, 534
BseJI GATNNNNATC 2 cut(s) 375, 486
BseLI CCNNNNNNNGG 3 cut(s) 308, 552, 709
BseMII CTCAG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 3 cut(s) 188, 191, 415
BseXI GCAGC 2 cut(s) 484, 512
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 3 cut(s) 474, 545, 702
BsiSI CCGG 2 cut(s) 296, 660
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 3 cut(s) 308, 552, 709
BsmAI GTCTC 2 cut(s) 383, 605
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 3 cut(s) 474, 545, 702
Bsp1407I TGTACA 1 cut(s) 460
Bsp143I GATC 5 cut(s) 10, 48, 127, 481, 487
Bsp19I CCATGG 1 cut(s) 538
BspACI CCGC 3 cut(s) 124, 327, 557
BspANI GGCC 3 cut(s) 474, 545, 702
BspCNI CTCAG 1 cut(s) 216
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 300, 544
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 2 cut(s) 43, 122
BsrFI RCCGGY 1 cut(s) 659
BsrGI TGTACA 1 cut(s) 460
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 659
BssECI CCNNGG 1 cut(s) 538
BssMI GATC 5 cut(s) 10, 48, 127, 481, 487
BssT1I CCWWGG 1 cut(s) 538
Bst4CI ACNGT 4 cut(s) 167, 318, 653, 724
Bst6I CTCTTC 3 cut(s) 118, 125, 603
BstAUI TGTACA 1 cut(s) 460
BstDEI CTNAG 1 cut(s) 203
BstDSI CCRYGG 1 cut(s) 538
BstF5I GGATG 4 cut(s) 376, 463, 499, 534
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 5 cut(s) 13, 51, 130, 484, 490
BstMAI GTCTC 2 cut(s) 383, 605
BstMBI GATC 5 cut(s) 10, 48, 127, 481, 487
BstMWI GCNNNNNNNGC 2 cut(s) 251, 506
BstNSI RCATGY 1 cut(s) 160
BstSFI CTRYAG 2 cut(s) 498, 504
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 484, 512
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 3 cut(s) 474, 545, 702
BtgI CCRYGG 1 cut(s) 538
BtsCI GGATG 4 cut(s) 376, 463, 499, 534
BtsIMutI CAGTG 1 cut(s) 649
CaiI CAGNNNCTG 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 659
Cfr13I GGNCC 2 cut(s) 108, 543
Csp6I GTAC 3 cut(s) 352, 438, 461
CviAII CATG 7 cut(s) 157, 251, 412, 450, 539, 547, 680
CviQI GTAC 3 cut(s) 352, 438, 461
DdeI CTNAG 1 cut(s) 203
DpnI GATC 5 cut(s) 12, 50, 129, 483, 489
DpnII GATC 5 cut(s) 10, 48, 127, 481, 487
EaeI YGGCCR 1 cut(s) 700
Eam1104I CTCTTC 3 cut(s) 118, 125, 603
EarI CTCTTC 3 cut(s) 118, 125, 603
Eco130I CCWWGG 1 cut(s) 538
Eco147I AGGCCT 1 cut(s) 474
Eco47I GGWCC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 538
EcoT22I ATGCAT 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 538
FaeI CATG 7 cut(s) 160, 254, 415, 453, 542, 550, 683
FaqI GGGAC 1 cut(s) 227
FatI CATG 7 cut(s) 156, 250, 411, 449, 538, 546, 679
FauI CCCGC 1 cut(s) 320
Fnu4HI GCNGC 2 cut(s) 498, 501
FokI GGATG 4 cut(s) 383, 470, 506, 521
Fsp4HI GCNGC 2 cut(s) 498, 501
GluI GCNGC 2 cut(s) 498, 501
HaeIII GGCC 3 cut(s) 474, 545, 702
HapII CCGG 2 cut(s) 296, 660
Hin1II CATG 7 cut(s) 160, 254, 415, 453, 542, 550, 683
HinfI GANTC 1 cut(s) 304
HpaII CCGG 2 cut(s) 296, 660
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 5 cut(s) 48, 303, 388, 605, 620
Hpy188III TCNNGA 4 cut(s) 418, 485, 491, 638
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 393, 565
HpyCH4III ACNGT 4 cut(s) 167, 318, 653, 724
HpyCH4V TGCA 8 cut(s) 99, 160, 254, 376, 500, 534, 550, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 506
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 7 cut(s) 160, 254, 415, 453, 542, 550, 683
Kzo9I GATC 5 cut(s) 10, 48, 127, 481, 487
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 9 cut(s) 78, 164, 196, 210, 293, 309, 416, 476, 673
Lsp1109I GCAGC 2 cut(s) 484, 512
LweI GCATC 4 cut(s) 69, 385, 484, 543
MaeIII GTNAC 3 cut(s) 653, 662, 718
MalI GATC 5 cut(s) 12, 50, 129, 483, 489
MboI GATC 5 cut(s) 10, 48, 127, 481, 487
MboII GAAGA 5 cut(s) 5, 105, 112, 371, 620
MflI RGATCY 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 702
MluCI AATT 5 cut(s) 234, 255, 267, 445, 624
MluNI TGGCCA 1 cut(s) 702
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 2 cut(s) 326, 583
Mox20I TGGCCA 1 cut(s) 702
Mph1103I ATGCAT 1 cut(s) 552
MscI TGGCCA 1 cut(s) 702
MseI TTAA 2 cut(s) 237, 516
MslI CAYNNNNRTG 1 cut(s) 684
Msp20I TGGCCA 1 cut(s) 702
MspI CCGG 2 cut(s) 296, 660
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 251, 506
NcoI CCATGG 1 cut(s) 538
NdeII GATC 5 cut(s) 10, 48, 127, 481, 487
NlaIII CATG 7 cut(s) 160, 254, 415, 453, 542, 550, 683
NlaIV GGNNCC 2 cut(s) 300, 544
NsiI ATGCAT 1 cut(s) 552
NspI RCATGY 1 cut(s) 160
PceI AGGCCT 1 cut(s) 474
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PflMI CCANNNNNTGG 2 cut(s) 552, 709
PkrI GCNGC 2 cut(s) 499, 502
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 300, 544
PspPI GGNCC 2 cut(s) 108, 543
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 210
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 3 cut(s) 353, 439, 462
RsaNI GTAC 3 cut(s) 352, 438, 461
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 2 cut(s) 237, 516
SatI GCNGC 2 cut(s) 498, 501
Sau3AI GATC 5 cut(s) 10, 48, 127, 481, 487
Sau96I GGNCC 2 cut(s) 108, 543
SchI GAGTC 1 cut(s) 298
SetI ASST 5 cut(s) 9, 198, 275, 360, 505
SfaNI GCATC 4 cut(s) 69, 385, 484, 543
SfcI CTRYAG 2 cut(s) 498, 504
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 1 cut(s) 636
SmoI CTYRAG 1 cut(s) 636
Sse9I AATT 5 cut(s) 234, 255, 267, 445, 624
SseBI AGGCCT 1 cut(s) 474
SsiI CCGC 3 cut(s) 124, 327, 557
StuI AGGCCT 1 cut(s) 474
StyI CCWWGG 1 cut(s) 538
TaaI ACNGT 4 cut(s) 167, 318, 653, 724
TaqI TCGA 4 cut(s) 417, 477, 486, 672
TasI AATT 5 cut(s) 234, 255, 267, 445, 624
TatI WGTACW 3 cut(s) 351, 437, 460
Tru1I TTAA 2 cut(s) 237, 516
Tru9I TTAA 2 cut(s) 237, 516
TscAI CASTG 1 cut(s) 656
TseI GCWGC 2 cut(s) 497, 500
TspDTI ATGAA 3 cut(s) 400, 438, 660
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 1 cut(s) 656
Van91I CCANNNNNTGG 2 cut(s) 552, 709
VpaK11BI GGWCC 1 cut(s) 108
VspI ATTAAT 1 cut(s) 237
XceI RCATGY 1 cut(s) 160
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.