Prupe.1G285200_v2.0.a1

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000289
Physical Location & Seq
Forward (+)
28637750 .. 28639396
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G285200.1

Sequence Viewer

Length: 1140 bp
ATGTGGGATGATCGAACTTCCTTCCCACTAGAGGAGTGCGGAACAAGGGAGACACAAATCACTCATCCGATCCCATTACCACGAAGTGGAGGATGGGATGCGCAAAGCCAGGGAAGTGGGGCTAAACCCAAGACCTCGGAGCGCTATAAAAACCCAGCTAGACCTCCAGCAAAGCTTCCAACCGAAATCTTATTCTGTGATATACTCCCCCAGCTACCACCAAAGACTCTGATGCGGTGCAAGTACGTATGCAAGTCTTGGTCTTCCCTCTTCCGCAGCCCTTCCTTTGTCACCGCCTTCAACAATTTTCACTGCAACGACAGAAACAAGAGCACCACGAACTTCCTTTTCCAGAAGAATAGTCCTCTCGAATGTCGTCCTAATCGTGTGCAATGTGTCCATGGTTTGGTTTGTGCATCCTCTAGGTGTGGTCCTGTTTTCATACTTAACCCTAGCACTCAAGAGTCCATCGAACTTCCCTATGTAATAGATAATTACCGCTTCGCATACTCTACATATCACTTCGGCTATAGTCCACAGACTAACGAGTATAAGGTTCTCCAGATCTTGTCATTTCGTCCCAAACAACTTAGCAATAGGGATATTCGGTTCAACACATTCACCCTAGGTAGGGATTCTTCATGGAGGCCACTGCAGAAAATAATAGTGGTATTTGACGTTAGAGAGGAGACCTTCAGACTGGTGTCACTACCTGAAGAATATGCACGAGAGTTTGGTCTCGATAATTATGGCCGCAATAGGATTGGTGTTGTTGAGGTGGGAGGATGTGTGGGTGTGTTTGCTGACAAGTCGTGGGGACACAACGAGATAGTGTTATGGATTTTGAAGGACTACCAGAACCTTGTGTGGGTTAAGGAGATTATTACCGCGATGCCAAGAGGAGCAGGCTACGTTGAAGCTTTGGGTACAATCCATACAGGTGAGCTAGCGCTCGCGCTCTATTTTCATGGAAATTCACCGGAATTTGATGACGGTCCACCTCAATTGCTTCTTTATGATATGGAGAGCAAACAATATAGAATACTTGATTTCATTTTTCCTAATAATATGGGAGTTGCTCGGGGAATACCGATTAAGTTAATTACTAGTTATGATGATAGCATTGCCCCCTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

43.3

Weight (kDa)

8.44

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 102
AccB7I CCANNNNNTGG 2 cut(s) 86, 406
AccII CGCG 2 cut(s) 890, 956
AciI CCGC 7 cut(s) 39, 235, 274, 294, 499, 754, 888
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 2 cut(s) 973, 983
AcuI CTGAAG 2 cut(s) 679, 735
AdeI CACNNNGTG 1 cut(s) 86
AfaI GTAC 2 cut(s) 245, 928
AfeI AGCGCT 2 cut(s) 143, 951
AfiI CCNNNNNNNGG 6 cut(s) 31, 86, 406, 630, 631, 868
AgsI TTSAA 4 cut(s) 301, 613, 847, 917
AhlI ACTAGT 1 cut(s) 1106
AjnI CCWGG 1 cut(s) 108
AloI GAACNNNNNNTCC 2 cut(s) 593, 625
AluBI AGCT 5 cut(s) 158, 175, 214, 920, 946
AluI AGCT 5 cut(s) 158, 175, 214, 920, 946
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 3 cut(s) 44, 683, 743
AlwI GGATC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 1080
Aor51HI AGCGCT 2 cut(s) 143, 951
AoxI GGCC 2 cut(s) 647, 751
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 2 cut(s) 973, 983
AspA2I CCTAGG 1 cut(s) 625
AspLEI GCGC 4 cut(s) 103, 144, 952, 958
AspS9I GGNCC 2 cut(s) 431, 995
AsuHPI GGTGA 4 cut(s) 283, 613, 953, 969
AsuNHI GCTAGC 1 cut(s) 946
AvaI CYCGRG 1 cut(s) 1080
AvaII GGWCC 2 cut(s) 431, 995
AvrII CCTAGG 1 cut(s) 625
BarI GAAGNNNNNNTAC 2 cut(s) 622, 654
BauI CACGAG 1 cut(s) 726
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 288
BccI CCATC 2 cut(s) 87, 476
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 3 cut(s) 44, 683, 743
BcuI ACTAGT 1 cut(s) 1106
BfaI CTAG 7 cut(s) 29, 159, 423, 453, 626, 947, 1107
BfmI CTRYAG 2 cut(s) 529, 653
BfoI RGCGCY 2 cut(s) 145, 953
BglII AGATCT 1 cut(s) 564
BisI GCNGC 2 cut(s) 277, 754
BlnI CCTAGG 1 cut(s) 625
BlsI GCNGC 2 cut(s) 278, 755
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 431, 995
BmeT110I CYCGRG 1 cut(s) 1080
BmgT120I GGNCC 2 cut(s) 431, 995
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 4 cut(s) 88, 222, 425, 882
BmtI GCTAGC 1 cut(s) 950
BoxI GACNNNNGTC 1 cut(s) 703
BpiI GAAGAC 1 cut(s) 255
BpmI CTGGAG 2 cut(s) 150, 545
BpuEI CTTGAG 1 cut(s) 444
BsaAI YACGTR 1 cut(s) 247
BsaI GGTCTC 2 cut(s) 683, 743
BsaJI CCNNGG 4 cut(s) 109, 135, 400, 625
BsaWI WCCGGW 1 cut(s) 979
BsaXI ACNNNNNCTCC 2 cut(s) 774, 804
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 86, 406, 630, 631, 868
Bse1I ACTGG 1 cut(s) 705
Bse3DI GCAATG 2 cut(s) 398, 1122
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 4 cut(s) 109, 135, 400, 625
BseGI GGATG 6 cut(s) 13, 64, 98, 103, 416, 791
BseLI CCNNNNNNNGG 6 cut(s) 31, 86, 406, 630, 631, 868
BseMI GCAATG 2 cut(s) 398, 1122
BseNI ACTGG 1 cut(s) 705
BseRI GAGGAG 3 cut(s) 47, 701, 915
BseXI GCAGC 1 cut(s) 288
BseYI CCCAGC 2 cut(s) 154, 210
Bsh1236I CGCG 2 cut(s) 890, 956
BshFI GGCC 2 cut(s) 649, 753
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 1080
BsiSI CCGG 1 cut(s) 980
BslFI GGGAC 2 cut(s) 564, 831
BslI CCNNNNNNNGG 6 cut(s) 31, 86, 406, 630, 631, 868
BsmAI GTCTC 3 cut(s) 44, 683, 743
BsmFI GGGAC 2 cut(s) 564, 831
BsnI GGCC 2 cut(s) 649, 753
Bso31I GGTCTC 2 cut(s) 683, 743
BsoBI CYCGRG 1 cut(s) 1080
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 3 cut(s) 10, 69, 564
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 7 cut(s) 39, 235, 274, 294, 499, 754, 888
BspANI GGCC 2 cut(s) 649, 753
BspFNI CGCG 2 cut(s) 890, 956
BspMAI CTGCAG 1 cut(s) 657
BspOI GCTAGC 1 cut(s) 950
BspPI GGATC 1 cut(s) 64
BspTNI GGTCTC 2 cut(s) 683, 743
BsrDI GCAATG 2 cut(s) 398, 1122
BsrI ACTGG 1 cut(s) 705
BssECI CCNNGG 4 cut(s) 109, 135, 400, 625
BssMI GATC 3 cut(s) 10, 69, 564
BssSI CACGAG 1 cut(s) 726
BssT1I CCWWGG 2 cut(s) 400, 625
Bst2BI CACGAG 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 995
Bst6I CTCTTC 1 cut(s) 275
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 3 cut(s) 907, 948, 954
BstDEI CTNAG 1 cut(s) 590
BstDSI CCRYGG 1 cut(s) 400
BstF5I GGATG 6 cut(s) 13, 64, 98, 103, 416, 791
BstFNI CGCG 2 cut(s) 890, 956
BstH2I RGCGCY 2 cut(s) 145, 953
BstHHI GCGC 4 cut(s) 103, 144, 952, 958
BstKTI GATC 3 cut(s) 13, 72, 567
BstMAI GTCTC 3 cut(s) 44, 683, 743
BstMBI GATC 3 cut(s) 10, 69, 564
BstNI CCWGG 1 cut(s) 110
BstPAI GACNNNNGTC 1 cut(s) 703
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 2 cut(s) 529, 653
BstSNI TACGTA 1 cut(s) 247
BstUI CGCG 2 cut(s) 890, 956
BstV1I GCAGC 1 cut(s) 288
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 564
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 1 cut(s) 564
BsuRI GGCC 2 cut(s) 649, 753
BtgI CCRYGG 1 cut(s) 400
BtgZI GCGATG 1 cut(s) 905
BtsCI GGATG 6 cut(s) 13, 64, 98, 103, 416, 791
BtsI GCAGTG 2 cut(s) 310, 650
BtsIMutI CAGTG 2 cut(s) 310, 650
Cac8I GCNNGC 3 cut(s) 907, 948, 954
CfoI GCGC 4 cut(s) 103, 144, 952, 958
Cfr13I GGNCC 2 cut(s) 431, 995
Csp6I GTAC 2 cut(s) 244, 927
CspCI CAANNNNNGTGG 2 cut(s) 987, 1022
CviAII CATG 3 cut(s) 401, 642, 968
CviQI GTAC 2 cut(s) 244, 927
DdeI CTNAG 1 cut(s) 590
DpnI GATC 3 cut(s) 12, 71, 566
DpnII GATC 3 cut(s) 10, 69, 564
DraIII CACNNNGTG 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco105I TACGTA 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 400, 625
Eco31I GGTCTC 2 cut(s) 683, 743
Eco47I GGWCC 2 cut(s) 431, 995
Eco47III AGCGCT 2 cut(s) 143, 951
Eco57I CTGAAG 2 cut(s) 679, 735
Eco88I CYCGRG 1 cut(s) 1080
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 400, 625
ErhI CCWWGG 2 cut(s) 400, 625
FaeI CATG 3 cut(s) 404, 645, 971
FaqI GGGAC 2 cut(s) 564, 831
FatI CATG 3 cut(s) 400, 641, 967
Fnu4HI GCNGC 2 cut(s) 277, 754
FokI GGATG 6 cut(s) 20, 51, 105, 110, 403, 798
Fsp4HI GCNGC 2 cut(s) 277, 754
FspBI CTAG 7 cut(s) 29, 159, 423, 453, 626, 947, 1107
FspI TGCGCA 1 cut(s) 102
GlaI GCGC 4 cut(s) 102, 143, 951, 957
GluI GCNGC 2 cut(s) 277, 754
GsaI CCCAGC 2 cut(s) 158, 214
GsuI CTGGAG 2 cut(s) 150, 545
HaeII RGCGCY 2 cut(s) 145, 953
HaeIII GGCC 2 cut(s) 649, 753
HapII CCGG 1 cut(s) 980
HhaI GCGC 4 cut(s) 103, 144, 952, 958
Hin1II CATG 3 cut(s) 404, 645, 971
Hin6I GCGC 4 cut(s) 101, 142, 950, 956
HinP1I GCGC 4 cut(s) 101, 142, 950, 956
HindIII AAGCTT 2 cut(s) 173, 918
HinfI GANTC 3 cut(s) 226, 464, 635
HpaII CCGG 1 cut(s) 980
HphI GGTGA 4 cut(s) 283, 613, 953, 969
Hpy166II GTNNAC 2 cut(s) 536, 998
Hpy188I TCNGA 4 cut(s) 69, 139, 231, 698
Hpy188III TCNNGA 5 cut(s) 352, 368, 461, 562, 740
Hpy8I GTNNAC 2 cut(s) 536, 998
HpyAV CCTTC 5 cut(s) 31, 291, 307, 703, 841
HpyCH4III ACNGT 1 cut(s) 995
HpyCH4IV ACGT 3 cut(s) 246, 678, 912
HpyCH4V TGCA 7 cut(s) 240, 252, 315, 391, 416, 655, 725
HpyF3I CTNAG 1 cut(s) 590
HpySE526I ACGT 3 cut(s) 246, 678, 912
Hsp92II CATG 3 cut(s) 404, 645, 971
HspAI GCGC 4 cut(s) 101, 142, 950, 956
Kzo9I GATC 3 cut(s) 10, 69, 564
LmnI GCTCC 2 cut(s) 139, 902
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 4 cut(s) 88, 222, 425, 882
MaeI CTAG 7 cut(s) 29, 159, 423, 453, 626, 947, 1107
MaeII ACGT 3 cut(s) 246, 678, 912
MaeIII GTNAC 2 cut(s) 289, 705
MalI GATC 3 cut(s) 12, 71, 566
MboI GATC 3 cut(s) 10, 69, 564
MboII GAAGA 5 cut(s) 255, 262, 367, 630, 728
MfeI CAATTG 1 cut(s) 1004
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 7 cut(s) 304, 493, 745, 973, 983, 1004, 1101
MlyI GAGTC 2 cut(s) 220, 473
MmeI TCCRAC 1 cut(s) 203
MseI TTAA 5 cut(s) 447, 873, 1095, 1100, 1133
MslI CAYNNNNRTG 1 cut(s) 939
MspI CCGG 1 cut(s) 980
MspR9I CCNGG 1 cut(s) 110
MunI CAATTG 1 cut(s) 1004
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 2 cut(s) 890, 956
NcoI CCATGG 1 cut(s) 400
NdeII GATC 3 cut(s) 10, 69, 564
NheI GCTAGC 1 cut(s) 946
NlaIII CATG 3 cut(s) 404, 645, 971
NmuCI GTSAC 2 cut(s) 289, 705
NsbI TGCGCA 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PfeI GAWTC 1 cut(s) 635
PflMI CCANNNNNTGG 2 cut(s) 86, 406
PkrI GCNGC 2 cut(s) 278, 755
PleI GAGTC 2 cut(s) 220, 472
PpsI GAGTC 2 cut(s) 220, 472
Ppu21I YACGTR 1 cut(s) 247
PshAI GACNNNNGTC 1 cut(s) 703
Psp6I CCWGG 1 cut(s) 108
PspFI CCCAGC 2 cut(s) 154, 210
PspGI CCWGG 1 cut(s) 108
PspPI GGNCC 2 cut(s) 431, 995
PstI CTGCAG 1 cut(s) 657
PsuI RGATCY 1 cut(s) 564
RsaI GTAC 2 cut(s) 245, 928
RsaNI GTAC 2 cut(s) 244, 927
RseI CAYNNNNRTG 1 cut(s) 939
SaqAI TTAA 5 cut(s) 447, 873, 1095, 1100, 1133
SatI GCNGC 2 cut(s) 277, 754
Sau3AI GATC 3 cut(s) 10, 69, 564
Sau96I GGNCC 2 cut(s) 431, 995
SchI GAGTC 2 cut(s) 220, 473
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 4 cut(s) 88, 222, 425, 882
SfcI CTRYAG 2 cut(s) 529, 653
SinI GGWCC 2 cut(s) 431, 995
SmiMI CAYNNNNRTG 1 cut(s) 939
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
SnaBI TACGTA 1 cut(s) 247
SpeI ACTAGT 1 cut(s) 1106
Sse9I AATT 7 cut(s) 304, 493, 745, 973, 983, 1004, 1101
SsiI CCGC 7 cut(s) 39, 235, 274, 294, 499, 754, 888
SspMI CTAG 7 cut(s) 29, 159, 423, 453, 626, 947, 1107
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 2 cut(s) 400, 625
TaaI ACNGT 1 cut(s) 995
TaiI ACGT 3 cut(s) 249, 681, 915
TaqI TCGA 4 cut(s) 13, 369, 471, 741
TasI AATT 7 cut(s) 304, 493, 745, 973, 983, 1004, 1101
TauI GCSGC 1 cut(s) 756
TfiI GAWTC 1 cut(s) 635
Tru1I TTAA 5 cut(s) 447, 873, 1095, 1100, 1133
Tru9I TTAA 5 cut(s) 447, 873, 1095, 1100, 1133
TscAI CASTG 2 cut(s) 317, 657
TseFI GTSAC 2 cut(s) 289, 705
TseI GCWGC 1 cut(s) 276
Tsp45I GTSAC 2 cut(s) 289, 705
TspDTI ATGAA 4 cut(s) 430, 630, 956, 1042
TspRI CASTG 2 cut(s) 317, 657
Van91I CCANNNNNTGG 2 cut(s) 86, 406
VpaK11BI GGWCC 2 cut(s) 431, 995
XapI RAATTY 2 cut(s) 973, 983
XmaJI CCTAGG 1 cut(s) 625
XspI CTAG 7 cut(s) 29, 159, 423, 453, 626, 947, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.