Rh4AG406900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000289
Physical Location & Seq
Forward (+)
70807761 .. 70808905
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG406900.1

Sequence Viewer

Length: 504 bp
ATGGCAACCCAAAAGATTTATATTGAAGGTTTAGTAGAGTTTAAGATTTTCACACTGGGTAAAGGTTCGTGGAGTGACATTGTCGTAGACTGGGATCAGCTGTCATTCTTTCCTCTTGGACCTTGGAACTTCTCCGATACTCAAAATGTATGTGTCCATGGGGCCATACACTGGTTCGCTAGTCGTTATGAGGCTATATTAGCTCTTGACATTGGAGAGGAGAGGTTCAAAATCATACGAGTGCCTAGTGAAGTTGAAGAAGTATGGAGAATTATTGAAGTGGATGGATGTCTATGTATAGTATCATCAGTACGTTTCTGGAAGATGGATGTGATGTTGTGGATTTTGAAGGACTACGAACATCAAGTGTGGGTTAAGGTGCCCGTCGCCCGTAGCCCTCCGGAATATCCTGCTTCTGACTTGCCTCTGGAATACCGTGCTTCTGACTTGCCTCTATGTACCATCCACACAGTTTGCAATCATATAAATCTGGCAGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

167

Amino Acids

19.34

Weight (kDa)

5.04

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 11 - 128 4.2e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 379
AccB7I CCANNNNNTGG 1 cut(s) 171
AccI GTMKAC 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 400
AclWI GGATC 1 cut(s) 102
AfaI GTAC 2 cut(s) 312, 460
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 5 cut(s) 26, 229, 257, 278, 349
AluBI AGCT 2 cut(s) 100, 203
AluI AGCT 2 cut(s) 100, 203
AlwI GGATC 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 119, 162
AvaII GGWCC 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 379
BccI CCATC 3 cut(s) 278, 319, 470
BfaI CTAG 2 cut(s) 180, 246
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 119, 162
BmiI GGNNCC 2 cut(s) 163, 381
BmrI ACTGGG 2 cut(s) 65, 100
BmuI ACTGGG 2 cut(s) 65, 100
BsaJI CCNNGG 2 cut(s) 122, 157
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse1I ACTGG 3 cut(s) 60, 95, 176
BseAI TCCGGA 1 cut(s) 400
BseDI CCNNGG 2 cut(s) 122, 157
BseGI GGATG 4 cut(s) 289, 293, 334, 462
BseLI CCNNNNNNNGG 1 cut(s) 171
BseNI ACTGG 3 cut(s) 60, 95, 176
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 384
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 379
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 171
BsnI GGCC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 384
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 1 cut(s) 94
Bsp19I CCATGG 1 cut(s) 157
BspANI GGCC 1 cut(s) 164
BspEI TCCGGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 163, 381
BspPI GGATC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 379
BsrI ACTGG 3 cut(s) 60, 95, 176
BssECI CCNNGG 2 cut(s) 122, 157
BssMI GATC 1 cut(s) 94
BssT1I CCWWGG 2 cut(s) 122, 157
Bst4CI ACNGT 2 cut(s) 437, 472
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 4 cut(s) 289, 293, 334, 462
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 384
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 4 cut(s) 289, 293, 334, 462
BtsIMutI CAGTG 2 cut(s) 53, 169
Cfr13I GGNCC 2 cut(s) 119, 162
Csp6I GTAC 2 cut(s) 311, 459
CspCI CAANNNNNGTGG 2 cut(s) 455, 490
CviAII CATG 1 cut(s) 158
CviJI RGCY 5 cut(s) 100, 164, 194, 203, 396
CviKI_1 RGCY 5 cut(s) 100, 164, 194, 203, 396
CviQI GTAC 2 cut(s) 311, 459
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 122, 157
Eco47I GGWCC 1 cut(s) 119
EcoT14I CCWWGG 2 cut(s) 122, 157
ErhI CCWWGG 2 cut(s) 122, 157
FaeI CATG 1 cut(s) 161
FatI CATG 1 cut(s) 157
FblI GTMKAC 1 cut(s) 87
FokI GGATG 4 cut(s) 296, 300, 341, 449
FspBI CTAG 2 cut(s) 180, 246
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 401
Hin1II CATG 1 cut(s) 161
HpaII CCGG 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 136, 418, 445
Hpy188III TCNNGA 4 cut(s) 206, 319, 401, 428
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 2 cut(s) 20, 343
HpyCH4III ACNGT 2 cut(s) 437, 472
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 1 cut(s) 161
Kpn2I TCCGGA 1 cut(s) 400
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 8 cut(s) 41, 76, 157, 304, 413, 414, 423, 476
MaeI CTAG 2 cut(s) 180, 246
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 2 cut(s) 269, 334
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 1 cut(s) 270
MnlI CCTC 7 cut(s) 123, 184, 211, 216, 408, 435, 462
MroI TCCGGA 1 cut(s) 400
MseI TTAA 2 cut(s) 42, 375
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 200
NcoI CCATGG 1 cut(s) 157
NdeII GATC 1 cut(s) 94
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 163, 381
NmuCI GTSAC 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 163, 381
PspPI GGNCC 2 cut(s) 119, 162
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 2 cut(s) 312, 460
RsaNI GTAC 2 cut(s) 311, 459
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 42, 375
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 2 cut(s) 119, 162
SduI GDGCHC 1 cut(s) 384
SetI ASST 8 cut(s) 31, 67, 102, 124, 205, 227, 316, 381
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 1 cut(s) 270
SspMI CTAG 2 cut(s) 180, 246
StyI CCWWGG 2 cut(s) 122, 157
TaaI ACNGT 2 cut(s) 437, 472
TaiI ACGT 1 cut(s) 316
TasI AATT 1 cut(s) 270
Tru1I TTAA 2 cut(s) 42, 375
Tru9I TTAA 2 cut(s) 42, 375
TscAI CASTG 2 cut(s) 60, 176
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspRI CASTG 2 cut(s) 60, 176
Tth111I GACNNNGTC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 180, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.