Rorug04G0294500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000289
Physical Location & Seq
Reverse (-)
46894321 .. 46896772
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0294500.1

Sequence Viewer

Length: 1533 bp
ATGGCCATGGCAAGCTTTGCTCGGCGGAAGGCCTACCTTCTCTCTAGAAACTTGTCCAACACGTCGTCGGAGGCCGTCCGCTACTCCTTCTCCATCACCTCCTTCTCCCGCGGCTTCGCTTCCTCGGGATCTGACGACAACGACGTCGTCGTCATCGGCGGCGGACCCGGCGGCTACGTCGCCGCCATCAAGGCCGCCCAGCTCGGCCTCAAGACCACCTGCATCGAGAAGCGCGGTGCTCTCGGCGGCACCTGCCTCAACGTCGGCTGCATACCCTCCAAGGCGCTTCTTCATTCGTCTCACATGTACCACGAAGCTCTGCATTCATTTAAAAGTCATGGTGTTAAGTTCGACAATGTTCAGATCGATTTGCCTGCCATGATGTCCCAGAAAGACAAAGCTGTGTCTAATCTGACTAAAGGAATCGAAGGTCTGTTCAAGAAGAATAAGGTGACTTATGTTAAAGGCTATGGAAAGTTCATCTCCCCCAATGAAGTTTCAGTGGACACCATTGATGGCGGGAATACGGTTGTGAAAGGAAAAAATATTATCATTGCCACGGGTTCTGATGTCAAATCTTTGCCCGGGGTTACCATTGATGAGAAGAAAATAGTATCATCAACTGGTGCTTTGGCTCTGTCAGAAATCCCAAAGAAACTTGTGGTTGTTGGAGCAGGATATATTGGCCTTGAGATGGGCTCAGTCTGGGGAAGACTTGGTTCTGAGATAACTGTTGTTGAGTTTGGACCTGATATTGTCCCATCAATGGATTCGGAAATCCGCAAGCAATTCCAGCGTTCCCTTGAGAAGCAAGGGATGAAATTTGTACTCAAAACAAAAGTGGTAGGAGTTGATACTTCTGGAGATGGTGTGAAGTTGACCCTTGAACCAGCAGCTGGTGGTGAGCAGACCACACTTGAAGCTGATGTTGTTCTTGTATCCGCTGGCAGGAATCCATTCACATCTGGGCTCGATCTGGACAAGATAGGAGTTGAAACTGACAAGATGGGGAGAATTTTAGTGAATGAAAGGTTTGTAACAAATGTTCCAAGTGTTCATGCAATTGGTGATGTTATTCCTGGACCTATGCTCGCTCACAAGGCAGAAGAGGATGGGGTTGCATGTGTGGAGTTCATAGCTGGTAAGGTTGGCCATGTGGACTATGATAAGGTCCCTGGGGTTGTCTATACTCACCCTGAGGTTGCGTCTGTTGGAAAGACCGAGGAGCAAGTGAAGGCCCTAGGCGTCGAATACCGAGTTGGAAAGTTCCCATTCTTGGCAAACAGCAGAGCCAAGGCAATAGATGATGCTGAAGGACTAGTCAAGATTTTGGCTGAGAAAGAAACAGATAAGATCTTGGGAGTTCACATCATGGCACCCAATGCGGGAGAGCTCATTCACGAGGCAGCCATAGCATTGCAGTATGATGCATCAAGTGAGGACATTGCTCGCGTTTGCCATGCACATCCAACCATGAGTGAGGCCTTGAAGGAAGCTGCCATGGCGACTTATGACAAGGCCATTCACATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

510

Amino Acids

54.12

Weight (kDa)

6.55

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 48 - 372 2e-74 Pyridine nucleotide-disulphide oxidoreductase
FAD_oxidored PF12831 48 - 89 6.4e-11 FAD dependent oxidoreductase
GIDA PF01134 48 - 190 1.1e-10 Glucose inhibited division protein A
FAD_binding_2 PF00890 48 - 84 6.2e-07 FAD binding domain
Pyr_redox_3 PF13738 175 - 356 5.1e-07 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 219 - 295 2.7e-22 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim PF02852 391 - 500 5.4e-42 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 227, 260
AasI GACNNNNNNGTC 2 cut(s) 143, 149
AatII GACGTC 1 cut(s) 147
Acc36I ACCTGC 2 cut(s) 227, 260
AccB1I GGYRCC 2 cut(s) 248, 1375
AccB7I CCANNNNNTGG 1 cut(s) 896
AccII CGCG 3 cut(s) 111, 234, 1452
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 2 cut(s) 3, 1150
AcsI RAATTY 2 cut(s) 821, 1014
AcuI CTGAAG 1 cut(s) 1332
AcyI GRCGYC 2 cut(s) 144, 1245
AfaI GTAC 2 cut(s) 308, 828
AfiI CCNNNNNNNGG 6 cut(s) 694, 766, 896, 948, 1276, 1385
AflIII ACRYGT 2 cut(s) 60, 303
AgsI TTSAA 5 cut(s) 439, 887, 920, 995, 1489
AhlI ACTAGT 1 cut(s) 1318
AjiI CACGTC 1 cut(s) 63
AjnI CCWGG 2 cut(s) 1078, 1174
AjuI GAANNNNNNNTTGG 2 cut(s) 1242, 1274
AluBI AGCT 9 cut(s) 15, 202, 317, 401, 896, 923, 1139, 1393, 1496
AluI AGCT 9 cut(s) 15, 202, 317, 401, 896, 923, 1139, 1393, 1496
Alw21I GWGCWC 2 cut(s) 241, 1395
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 1 cut(s) 136
AlwNI CAGNNNCTG 1 cut(s) 896
Ama87I CYCGRG 2 cut(s) 124, 584
ApeKI GCWGC 4 cut(s) 267, 893, 1406, 1496
ApoI RAATTY 2 cut(s) 821, 1014
Asp700I GAANNNNTTC 1 cut(s) 956
AspA2I CCTAGG 1 cut(s) 1240
AspLEI GCGC 2 cut(s) 234, 286
AspS9I GGNCC 5 cut(s) 164, 746, 1082, 1171, 1237
AsuC2I CCSGG 3 cut(s) 168, 585, 586
AsuHPI GGTGA 5 cut(s) 88, 463, 914, 1079, 1184
AvaI CYCGRG 2 cut(s) 124, 584
AvaII GGWCC 4 cut(s) 164, 746, 1082, 1171
AvrII CCTAGG 1 cut(s) 1240
AxyI CCTNAGG 1 cut(s) 1197
BalI TGGCCA 2 cut(s) 5, 1152
BanI GGYRCC 2 cut(s) 248, 1375
BanII GRGCYC 3 cut(s) 701, 972, 1395
BauI CACGAG 1 cut(s) 1400
BbsI GAAGAC 1 cut(s) 718
Bbv12I GWGCWC 2 cut(s) 241, 1395
BbvI GCAGC 4 cut(s) 254, 905, 1418, 1483
BccI CCATC 8 cut(s) 101, 194, 509, 688, 769, 860, 1000, 1106
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 2 cut(s) 1080, 1176
BciVI GTATCC 1 cut(s) 949
BcnI CCSGG 3 cut(s) 168, 585, 586
BcoDI GTCTC 1 cut(s) 303
BcuI ACTAGT 1 cut(s) 1318
BfaI CTAG 4 cut(s) 45, 1241, 1319, 1531
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 2 cut(s) 227, 260
BfuI GTATCC 1 cut(s) 949
BglI GCCNNNNNGGC 1 cut(s) 191
BglII AGATCT 1 cut(s) 1353
BlnI CCTAGG 1 cut(s) 1240
Bme1390I CCNGG 5 cut(s) 168, 585, 586, 1080, 1176
Bme18I GGWCC 4 cut(s) 164, 746, 1082, 1171
BmeT110I CYCGRG 2 cut(s) 124, 584
BmgBI CACGTC 1 cut(s) 63
BmgT120I GGNCC 5 cut(s) 164, 746, 1082, 1171, 1237
BmiI GGNNCC 4 cut(s) 166, 250, 1173, 1377
BmrFI CCNGG 5 cut(s) 168, 585, 586, 1080, 1176
BmsI GCATC 4 cut(s) 231, 1297, 1417, 1439
BpiI GAAGAC 1 cut(s) 718
BplI GAGNNNNNCTC 2 cut(s) 683, 715
BpmI CTGGAG 1 cut(s) 882
BpuEI CTTGAG 3 cut(s) 194, 710, 824
BpuMI CCSGG 3 cut(s) 168, 585, 586
Bsa29I ATCGAT 1 cut(s) 366
BsaHI GRCGYC 2 cut(s) 144, 1245
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 855, 885
Bsc4I CCNNNNNNNGG 6 cut(s) 694, 766, 896, 948, 1276, 1385
Bse1I ACTGG 1 cut(s) 628
Bse21I CCTNAGG 1 cut(s) 1197
Bse3DI GCAATG 3 cut(s) 552, 1415, 1443
BseBI CCWGG 2 cut(s) 1080, 1176
BseCI ATCGAT 1 cut(s) 366
BseGI GGATG 3 cut(s) 822, 1117, 1465
BseLI CCNNNNNNNGG 6 cut(s) 694, 766, 896, 948, 1276, 1385
BseMI GCAATG 3 cut(s) 552, 1415, 1443
BseMII CTCAG 4 cut(s) 714, 714, 1188, 1326
BseNI ACTGG 1 cut(s) 628
BseRI GAGGAG 1 cut(s) 1238
BseXI GCAGC 4 cut(s) 254, 905, 1418, 1483
BseYI CCCAGC 1 cut(s) 198
Bsh1236I CGCG 3 cut(s) 111, 234, 1452
BshNI GGYRCC 2 cut(s) 248, 1375
BshVI ATCGAT 1 cut(s) 366
BsiHKAI GWGCWC 2 cut(s) 241, 1395
BsiHKCI CYCGRG 2 cut(s) 124, 584
BsiSI CCGG 2 cut(s) 168, 585
BslFI GGGAC 3 cut(s) 370, 743, 1157
BslI CCNNNNNNNGG 6 cut(s) 694, 766, 896, 948, 1276, 1385
BsmAI GTCTC 1 cut(s) 303
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 3 cut(s) 370, 743, 1157
BsmI GAATGC 1 cut(s) 322
BsoBI CYCGRG 2 cut(s) 124, 584
Bsp1286I GDGCHC 4 cut(s) 241, 701, 972, 1395
Bsp143I GATC 4 cut(s) 128, 363, 973, 1353
Bsp19I CCATGG 2 cut(s) 6, 1500
BspCNI CTCAG 4 cut(s) 713, 715, 1189, 1327
BspDI ATCGAT 1 cut(s) 366
BspFNI CGCG 3 cut(s) 111, 234, 1452
BspLI GGNNCC 4 cut(s) 166, 250, 1173, 1377
BspMI ACCTGC 2 cut(s) 227, 260
BspPI GGATC 1 cut(s) 136
BspT107I GGYRCC 2 cut(s) 248, 1375
BsrDI GCAATG 3 cut(s) 552, 1415, 1443
BsrI ACTGG 1 cut(s) 628
BssMI GATC 4 cut(s) 128, 363, 973, 1353
BssNI GRCGYC 2 cut(s) 144, 1245
BssSI CACGAG 1 cut(s) 1400
BssT1I CCWWGG 5 cut(s) 6, 279, 1240, 1293, 1500
Bst2BI CACGAG 1 cut(s) 1400
Bst2UI CCWGG 2 cut(s) 1080, 1176
Bst4CI ACNGT 2 cut(s) 529, 733
Bst6I CTCTTC 1 cut(s) 1101
BstACI GRCGYC 2 cut(s) 144, 1245
BstAPI GCANNNNNTGC 2 cut(s) 17, 1382
BstC8I GCNNGC 6 cut(s) 13, 375, 785, 946, 1092, 1450
BstDEI CTNAG 4 cut(s) 700, 723, 1197, 1335
BstDSI CCRYGG 4 cut(s) 6, 109, 558, 1500
BstEII GGTNACC 1 cut(s) 589
BstF5I GGATG 3 cut(s) 822, 1117, 1465
BstFNI CGCG 3 cut(s) 111, 234, 1452
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 234, 286
BstKTI GATC 4 cut(s) 131, 366, 976, 1356
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 4 cut(s) 128, 363, 973, 1353
BstMWI GCNNNNNNNGC 9 cut(s) 17, 168, 191, 252, 793, 1100, 1382, 1412, 1502
BstNI CCWGG 2 cut(s) 1080, 1176
BstNSI RCATGY 2 cut(s) 307, 1125
BstPI GGTNACC 1 cut(s) 589
BstSCI CCNGG 5 cut(s) 166, 583, 584, 1078, 1174
BstUI CGCG 3 cut(s) 111, 234, 1452
BstV1I GCAGC 4 cut(s) 254, 905, 1418, 1483
BstV2I GAAGAC 1 cut(s) 718
BstX2I RGATCY 2 cut(s) 128, 1353
BstYI RGATCY 2 cut(s) 128, 1353
Bsu15I ATCGAT 1 cut(s) 366
Bsu36I CCTNAGG 1 cut(s) 1197
BsuI GTATCC 1 cut(s) 949
BsuTUI ATCGAT 1 cut(s) 366
BtgI CCRYGG 4 cut(s) 6, 109, 558, 1500
BtrI CACGTC 1 cut(s) 63
BtsCI GGATG 3 cut(s) 822, 1117, 1465
BtsIMutI CAGTG 1 cut(s) 507
BveI ACCTGC 2 cut(s) 227, 260
Cac8I GCNNGC 6 cut(s) 13, 375, 785, 946, 1092, 1450
CaiI CAGNNNCTG 1 cut(s) 896
CfoI GCGC 2 cut(s) 234, 286
Cfr13I GGNCC 5 cut(s) 164, 746, 1082, 1171, 1237
Cfr42I CCGCGG 1 cut(s) 112
Cfr9I CCCGGG 1 cut(s) 584
ClaI ATCGAT 1 cut(s) 366
CseI GACGC 2 cut(s) 1194, 1234
Csp6I GTAC 2 cut(s) 307, 827
CviQI GTAC 2 cut(s) 307, 827
DdeI CTNAG 4 cut(s) 700, 723, 1197, 1335
DpnI GATC 4 cut(s) 130, 365, 975, 1355
DpnII GATC 4 cut(s) 128, 363, 973, 1353
DraI TTTAAA 1 cut(s) 331
DrdI GACNNNNNNGTC 2 cut(s) 143, 149
DseDI GACNNNNNNGTC 2 cut(s) 143, 149
EaeI YGGCCR 2 cut(s) 3, 1150
Eam1104I CTCTTC 1 cut(s) 1101
EarI CTCTTC 1 cut(s) 1101
EciI GGCGGA 2 cut(s) 40, 177
Ecl136II GAGCTC 1 cut(s) 1393
Eco130I CCWWGG 5 cut(s) 6, 279, 1240, 1293, 1500
Eco147I AGGCCT 2 cut(s) 32, 1484
Eco24I GRGCYC 3 cut(s) 701, 972, 1395
Eco47I GGWCC 4 cut(s) 164, 746, 1082, 1171
Eco53kI GAGCTC 1 cut(s) 1393
Eco57I CTGAAG 1 cut(s) 1332
Eco81I CCTNAGG 1 cut(s) 1197
Eco88I CYCGRG 2 cut(s) 124, 584
Eco91I GGTNACC 1 cut(s) 589
EcoICRI GAGCTC 1 cut(s) 1393
EcoO109I RGGNCCY 2 cut(s) 1171, 1237
EcoO65I GGTNACC 1 cut(s) 589
EcoRII CCWGG 2 cut(s) 1078, 1174
EcoT14I CCWWGG 5 cut(s) 6, 279, 1240, 1293, 1500
EcoT22I ATGCAT 1 cut(s) 1432
EcoT38I GRGCYC 3 cut(s) 701, 972, 1395
ErhI CCWWGG 5 cut(s) 6, 279, 1240, 1293, 1500
Esp3I CGTCTC 1 cut(s) 303
FaqI GGGAC 3 cut(s) 370, 743, 1157
FauI CCCGC 3 cut(s) 116, 512, 1378
FokI GGATG 3 cut(s) 829, 1124, 1452
FriOI GRGCYC 3 cut(s) 701, 972, 1395
FspBI CTAG 4 cut(s) 45, 1241, 1319, 1531
GlaI GCGC 2 cut(s) 233, 285
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 882
HaeII RGCGCY 1 cut(s) 287
HapII CCGG 2 cut(s) 168, 585
HgaI GACGC 2 cut(s) 1194, 1234
HhaI GCGC 2 cut(s) 234, 286
Hin1I GRCGYC 2 cut(s) 144, 1245
Hin6I GCGC 2 cut(s) 232, 284
HinP1I GCGC 2 cut(s) 232, 284
HincII GTYRAC 1 cut(s) 879
HindII GTYRAC 1 cut(s) 879
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 3 cut(s) 423, 770, 952
HpaII CCGG 2 cut(s) 168, 585
HphI GGTGA 5 cut(s) 88, 463, 914, 1079, 1184
Hpy166II GTNNAC 4 cut(s) 505, 879, 1159, 1366
Hpy188I TCNGA 8 cut(s) 70, 133, 363, 414, 568, 643, 724, 775
Hpy188III TCNNGA 9 cut(s) 45, 126, 211, 226, 439, 861, 977, 1324, 1400
Hpy8I GTNNAC 4 cut(s) 505, 879, 1159, 1366
Hpy99I CGWCG 8 cut(s) 67, 70, 146, 149, 152, 182, 266, 1250
HpyAV CCTTC 8 cut(s) 22, 47, 97, 112, 422, 1228, 1307, 1483
HpyCH4III ACNGT 2 cut(s) 529, 733
HpyCH4IV ACGT 4 cut(s) 62, 144, 177, 261
HpyCH4V TGCA 8 cut(s) 222, 270, 322, 1061, 1121, 1420, 1430, 1463
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 168, 191, 252, 793, 1100, 1382, 1412, 1502
HpyF3I CTNAG 4 cut(s) 700, 723, 1197, 1335
HpySE526I ACGT 4 cut(s) 62, 144, 177, 261
Hsp92I GRCGYC 2 cut(s) 144, 1245
HspAI GCGC 2 cut(s) 232, 284
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 4 cut(s) 128, 363, 973, 1353
LmnI GCTCC 2 cut(s) 671, 1225
Lsp1109I GCAGC 4 cut(s) 254, 905, 1418, 1483
LweI GCATC 4 cut(s) 231, 1297, 1417, 1439
MaeI CTAG 4 cut(s) 45, 1241, 1319, 1531
MaeII ACGT 4 cut(s) 62, 144, 177, 261
MaeIII GTNAC 3 cut(s) 451, 589, 1036
MalI GATC 4 cut(s) 130, 365, 975, 1355
MboI GATC 4 cut(s) 128, 363, 973, 1353
MboII GAAGA 5 cut(s) 281, 454, 616, 723, 1118
MfeI CAATTG 1 cut(s) 1062
MflI RGATCY 2 cut(s) 128, 1353
MhlI GDGCHC 4 cut(s) 241, 701, 972, 1395
MlsI TGGCCA 2 cut(s) 5, 1152
MluCI AATT 4 cut(s) 788, 821, 1014, 1062
MluNI TGGCCA 2 cut(s) 5, 1152
MmeI TCCRAC 6 cut(s) 48, 81, 649, 1192, 1240, 1493
Mox20I TGGCCA 2 cut(s) 5, 1152
Mph1103I ATGCAT 1 cut(s) 1432
MroXI GAANNNNTTC 1 cut(s) 956
MscI TGGCCA 2 cut(s) 5, 1152
MseI TTAA 3 cut(s) 330, 345, 462
Msp20I TGGCCA 2 cut(s) 5, 1152
MspA1I CMGCKG 3 cut(s) 111, 896, 944
MspI CCGG 2 cut(s) 168, 585
MspR9I CCNGG 5 cut(s) 168, 585, 586, 1080, 1176
MunI CAATTG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 2 cut(s) 1080, 1176
MvnI CGCG 3 cut(s) 111, 234, 1452
MwoI GCNNNNNNNGC 9 cut(s) 17, 168, 191, 252, 793, 1100, 1382, 1412, 1502
NciI CCSGG 3 cut(s) 168, 585, 586
NcoI CCATGG 2 cut(s) 6, 1500
NdeII GATC 4 cut(s) 128, 363, 973, 1353
NlaIV GGNNCC 4 cut(s) 166, 250, 1173, 1377
NmeAIII GCCGAG 2 cut(s) 183, 222
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 1432
NspI RCATGY 2 cut(s) 307, 1125
PaqCI CACCTGC 2 cut(s) 227, 260
PasI CCCWGGG 1 cut(s) 1175
PceI AGGCCT 2 cut(s) 32, 1484
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 147
PctI GAATGC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 956
PfeI GAWTC 3 cut(s) 423, 770, 952
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 896
PfoI TCCNGGA 1 cut(s) 1078
PpuMI RGGWCCY 1 cut(s) 1171
PscI ACATGT 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 1395
Psp5II RGGWCCY 1 cut(s) 1171
Psp6I CCWGG 2 cut(s) 1078, 1174
PspEI GGTNACC 1 cut(s) 589
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 2 cut(s) 1078, 1174
PspN4I GGNNCC 4 cut(s) 166, 250, 1173, 1377
PspPI GGNCC 5 cut(s) 164, 746, 1082, 1171, 1237
PspPPI RGGWCCY 1 cut(s) 1171
PsrI GAACNNNNNNTAC 2 cut(s) 1029, 1061
PstNI CAGNNNCTG 1 cut(s) 896
PsuI RGATCY 2 cut(s) 128, 1353
PsyI GACNNNGTC 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 2 cut(s) 308, 828
RsaNI GTAC 2 cut(s) 307, 827
SacI GAGCTC 1 cut(s) 1395
SacII CCGCGG 1 cut(s) 112
SaqAI TTAA 3 cut(s) 330, 345, 462
Sau3AI GATC 4 cut(s) 128, 363, 973, 1353
Sau96I GGNCC 5 cut(s) 164, 746, 1082, 1171, 1237
ScrFI CCNGG 5 cut(s) 168, 585, 586, 1080, 1176
SduI GDGCHC 4 cut(s) 241, 701, 972, 1395
SfaNI GCATC 4 cut(s) 231, 1297, 1417, 1439
Sfr303I CCGCGG 1 cut(s) 112
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 4 cut(s) 164, 746, 1082, 1171
SmaI CCCGGG 1 cut(s) 586
SmlI CTYRAG 3 cut(s) 209, 689, 803
SmoI CTYRAG 3 cut(s) 209, 689, 803
SpeI ACTAGT 1 cut(s) 1318
Sse9I AATT 4 cut(s) 788, 821, 1014, 1062
SseBI AGGCCT 2 cut(s) 32, 1484
SspI AATATT 1 cut(s) 547
SspMI CTAG 4 cut(s) 45, 1241, 1319, 1531
SstI GAGCTC 1 cut(s) 1395
StuI AGGCCT 2 cut(s) 32, 1484
StyD4I CCNGG 5 cut(s) 166, 583, 584, 1078, 1174
StyI CCWWGG 5 cut(s) 6, 279, 1240, 1293, 1500
TaaI ACNGT 2 cut(s) 529, 733
TaiI ACGT 4 cut(s) 65, 147, 180, 264
TaqI TCGA 6 cut(s) 225, 351, 366, 426, 972, 1248
TaqII GACCGA 1 cut(s) 1235
TasI AATT 4 cut(s) 788, 821, 1014, 1062
TatI WGTACW 1 cut(s) 826
TauI GCSGC 6 cut(s) 114, 162, 174, 185, 197, 249
TfiI GAWTC 3 cut(s) 423, 770, 952
Tru1I TTAA 3 cut(s) 330, 345, 462
Tru9I TTAA 3 cut(s) 330, 345, 462
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 4 cut(s) 267, 893, 1406, 1496
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 8 cut(s) 281, 315, 469, 507, 833, 1041, 1046, 1123
TspMI CCCGGG 1 cut(s) 584
TspRI CASTG 1 cut(s) 507
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 896
VpaK11BI GGWCC 4 cut(s) 164, 746, 1082, 1171
XapI RAATTY 2 cut(s) 821, 1014
XbaI TCTAGA 1 cut(s) 44
XceI RCATGY 2 cut(s) 307, 1125
XmaI CCCGGG 1 cut(s) 584
XmaJI CCTAGG 1 cut(s) 1240
XmnI GAANNNNTTC 1 cut(s) 956
XspI CTAG 4 cut(s) 45, 1241, 1319, 1531
ZraI GACGTC 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 1432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.