Rh4DG408300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000289
Physical Location & Seq
Forward (+)
62096153 .. 62096584
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG408300.1

Sequence Viewer

Length: 432 bp
ATGTACACTCACCTCCTGTTACATTTCTACGACAAAACCGCATTGCATGAGCGCTTGCTCTCCCTTCAAATCAACCAAGATGGTAGTCCATCACTCCTCGCACATTGTCTAACACTGCCCTACAAATATCGTCTTTACCAAACCTATTCTAGCAACGGCTTGGTACTTCTTAAGCTTGGTAATGCTTTGATTTATGACCACCCCATTCGTATATTTAATCCCTGCACCAGAGAGTCCATTACTCTTCCCCTTCCTAATTTTCCTACACACATAAGCTACCCCTGGTTCCAGATTGTACACCTCTTTGGGTTCAGTCCTCTCACTAATGAGTATAAGGTTTTCCAAGTTCAATATCGCAACTCTTTAGGCGAATCTGCTCGAACCATTCATGGCTTTACTTTCAAGATTTTCACACTGGGCACACATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

143

Amino Acids

16.62

Weight (kDa)

9.15

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 9 - 141 2.1e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AfaI GTAC 3 cut(s) 5, 165, 297
AfeI AGCGCT 1 cut(s) 53
AflII CTTAAG 1 cut(s) 170
AgsI TTSAA 3 cut(s) 68, 350, 403
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 2 cut(s) 175, 276
AluI AGCT 2 cut(s) 175, 276
Aor51HI AGCGCT 1 cut(s) 53
AspLEI GCGC 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 422
BccI CCATC 2 cut(s) 74, 97
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 283
BfaI CTAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 55
BfrI CTTAAG 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 283
BmrI ACTGGG 1 cut(s) 425
BmuI ACTGGG 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 41
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 422
BsgI GTGCAG 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 422
Bsp1407I TGTACA 2 cut(s) 3, 295
BspACI CCGC 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 287
BspTI CTTAAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 41
BsrGI TGTACA 2 cut(s) 3, 295
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 281
Bst2UI CCWGG 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 170
BstAUI TGTACA 2 cut(s) 3, 295
BstC8I GCNNGC 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 281
BstSLI GKGCMC 1 cut(s) 422
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 2 cut(s) 113, 413
Cac8I GCNNGC 1 cut(s) 56
CfoI GCGC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 4, 164, 296
CviAII CATG 3 cut(s) 47, 389, 425
CviJI RGCY 4 cut(s) 159, 175, 276, 393
CviKI_1 RGCY 4 cut(s) 159, 175, 276, 393
CviQI GTAC 3 cut(s) 4, 164, 296
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco47III AGCGCT 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 430
FaeI CATG 3 cut(s) 50, 392, 428
FaiI YATR 8 cut(s) 48, 195, 212, 272, 333, 390, 426, 430
FatI CATG 3 cut(s) 46, 388, 424
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 55
HhaI GCGC 1 cut(s) 54
Hin1II CATG 3 cut(s) 50, 392, 428
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 233, 371
Hpy166II GTNNAC 2 cut(s) 6, 298
Hpy188III TCNNGA 2 cut(s) 289, 403
Hpy8I GTNNAC 2 cut(s) 6, 298
HpyAV CCTTC 2 cut(s) 74, 260
HpyCH4V TGCA 3 cut(s) 46, 225, 428
Hsp92II CATG 3 cut(s) 50, 392, 428
HspAI GCGC 1 cut(s) 52
LpnPI CCDG 7 cut(s) 29, 235, 241, 268, 295, 302, 401
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 18
MboII GAAGA 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 4 cut(s) 23, 107, 311, 327
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 2 cut(s) 171, 216
MspCI CTTAAG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
NlaIII CATG 3 cut(s) 50, 392, 428
NlaIV GGNNCC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 1 cut(s) 428
PfeI GAWTC 1 cut(s) 371
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 287
RsaI GTAC 3 cut(s) 5, 165, 297
RsaNI GTAC 3 cut(s) 4, 164, 296
SaqAI TTAA 2 cut(s) 171, 216
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 1 cut(s) 422
SetI ASST 6 cut(s) 15, 146, 177, 278, 303, 339
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 256
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 281
TaqI TCGA 1 cut(s) 379
TasI AATT 1 cut(s) 256
TatI WGTACW 2 cut(s) 3, 295
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 2 cut(s) 171, 216
Tru9I TTAA 2 cut(s) 171, 216
TscAI CASTG 2 cut(s) 120, 420
TspDTI ATGAA 1 cut(s) 377
TspRI CASTG 2 cut(s) 120, 420
Vha464I CTTAAG 1 cut(s) 170
XceI RCATGY 1 cut(s) 428
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.