Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000289

Physical Location & Seq

Genomic Coordinates Forward (+)

61799359 .. 61803813

Gene Structure 4455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0446400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTTCTTCGAGCAGGAGAAAGAGCAGTGCTAAAGGAGTTGCCTCTCCAAGCTTCTTCAAGGTTGTTGTGGATGAGGCTCTTGAAGATGGGATGCTTGAAATTGAAGGTTATGTTGCGAGGAACTATGAAGATTTCCTGGGACGCTCAGTAGTCCTCACTGATCCGAAAGGTTCTATGTGGCCAATGGAACTCAAAAGGAGCAATGGCAGCGTTTGGTTGAAAAAGGGATGGCTAGAATTTGCCAACTTTTATTCCCTAGAACAAGGATGCTTCATATTTTTTACCCACAAAGGCTTCGATTCAGGTTTCCAAGTACGTATTTTCAATAAGCGGTGGTTGGAGATAGATTATCCATTCAAATCAAGCCATCAAGAGGATTCCAAGTTTCGTAGAGGAGGTGATGAAGCCTTTACAAGAGCTAAGAGGTTCAAATCCAACCATCCATGTCTTGCTGTCAGAATGCAACCCTCCTACCTGTTAAGGGGTTTGAAATTGAATGCAACCTTTGTGAATGAAAATATCTGTGCAACAGGCGCCACTCGCAAAATCAAGCTACAGATTCCAAATGGGAAAACCTGGTCTGCTAAGTGCTCTGTCTACTTATGCATGAACAAAGACTATGCAAAAATCTGCAGTGGTTGGACAAAGTTTGCGGCGGAAAATAAGCTGCAAGTAGGGGATGCTTGTGCGTTGGAGCTGATAAAGGAGTGCCCTAAACTTACATTCTTGGTTCACATATTCCGAGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1751

Protein Analysis

251

Amino Acids

28.61

Weight (kDa)

9.47

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	27 - 111	1.6e-11	B3 DNA binding domain
B3	PF02362	156 - 251	3e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica	MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica	Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis	pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis	RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata	RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora	Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii	Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa	Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha	Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana	Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	3 cut(s)	334, 656, 659
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	2 cut(s)	376, 484
AjnI	CCWGG	2 cut(s)	138, 578
AluBI	AGCT	6 cut(s)	54, 422, 556, 670, 700, 749
AluI	AGCT	6 cut(s)	54, 422, 556, 670, 700, 749
Alw21I	GWGCWC	1 cut(s)	596
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	210, 670
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	2 cut(s)	222, 657
BccI	CCATC	4 cut(s)	83, 225, 378, 450
BciT130I	CCWGG	2 cut(s)	140, 580
BfaI	CTAG	2 cut(s)	236, 260
BfmI	CTRYAG	2 cut(s)	557, 634
BfoI	RGCGCY	1 cut(s)	540
BisI	GCNGC	3 cut(s)	211, 657, 671
BlsI	GCNGC	3 cut(s)	212, 658, 672
Bme1390I	CCNGG	2 cut(s)	140, 580
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	2 cut(s)	140, 580
BmsI	GCATC	3 cut(s)	84, 260, 673
BsaAI	YACGTR	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	537
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 484
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	140, 580
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	6 cut(s)	79, 99, 236, 275, 442, 688
BseLI	CCNNNNNNNGG	2 cut(s)	376, 484
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	2 cut(s)	222, 657
BshFI	GGCC	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	596
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	376, 484
BsmFI	GGGAC	1 cut(s)	156
BsmI	GAATGC	2 cut(s)	468, 505
BsnI	GGCC	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	596, 716
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	3 cut(s)	334, 656, 659
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	538
BspMAI	CTGCAG	1 cut(s)	638
BspPI	GGATC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	140, 580
BstACI	GRCGYC	1 cut(s)	537
BstBAI	YACGTR	1 cut(s)	320
BstDEI	CTNAG	3 cut(s)	148, 423, 588
BstF5I	GGATG	6 cut(s)	79, 99, 236, 275, 442, 688
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 536, 543
BstNI	CCWGG	2 cut(s)	140, 580
BstSCI	CCNGG	2 cut(s)	138, 578
BstSFI	CTRYAG	2 cut(s)	557, 634
BstSLI	GKGCMC	1 cut(s)	716
BstSNI	TACGTA	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	222, 657
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	6 cut(s)	79, 99, 236, 275, 442, 688
BtsI	GCAGTG	2 cut(s)	34, 643
BtsIMutI	CAGTG	3 cut(s)	34, 159, 643
CfoI	GCGC	1 cut(s)	539
CseI	GACGC	1 cut(s)	153
CsiI	ACCWGGT	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	2 cut(s)	447, 610
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	3 cut(s)	148, 423, 588
DinI	GGCGCC	1 cut(s)	538
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	674
Eco105I	TACGTA	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	138, 578
EcoT22I	ATGCAT	1 cut(s)	611
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
FaeI	CATG	2 cut(s)	450, 613
FaiI	YATR	9 cut(s)	114, 129, 179, 278, 448, 607, 611, 624, 740
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	2 cut(s)	446, 609
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	3 cut(s)	211, 657, 671
FokI	GGATG	6 cut(s)	86, 106, 243, 282, 429, 695
Fsp4HI	GCNGC	3 cut(s)	211, 657, 671
FspBI	CTAG	2 cut(s)	236, 260
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	3 cut(s)	211, 657, 671
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	184
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	539
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	2 cut(s)	450, 613
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	3 cut(s)	302, 380, 562
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	2 cut(s)	601, 736
Hpy188I	TCNGA	3 cut(s)	168, 461, 746
Hpy188III	TCNNGA	2 cut(s)	83, 374
Hpy8I	GTNNAC	2 cut(s)	601, 736
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	7 cut(s)	466, 503, 530, 609, 626, 636, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 536, 543
HpyF3I	CTNAG	3 cut(s)	148, 423, 588
HpySE526I	ACGT	1 cut(s)	319
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	2 cut(s)	450, 613
HspAI	GCGC	1 cut(s)	537
KasI	GGCGCC	1 cut(s)	536
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	201, 697
LpnPI	CCDG	7 cut(s)	125, 152, 291, 491, 519, 565, 592
Lsp1109I	GCAGC	2 cut(s)	222, 657
LweI	GCATC	3 cut(s)	84, 260, 673
MabI	ACCWGGT	1 cut(s)	578
MaeI	CTAG	2 cut(s)	236, 260
MaeII	ACGT	1 cut(s)	319
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	49, 98, 143
MhlI	GDGCHC	2 cut(s)	596, 716
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	4 cut(s)	102, 239, 494, 751
MluNI	TGGCCA	1 cut(s)	184
Mly113I	GGCGCC	1 cut(s)	537
MmeI	TCCRAC	4 cut(s)	321, 462, 623, 675
MnlI	CCTC	9 cut(s)	55, 70, 114, 167, 370, 389, 392, 420, 481
Mox20I	TGGCCA	1 cut(s)	184
Mph1103I	ATGCAT	1 cut(s)	611
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	2 cut(s)	482, 754
Msp20I	TGGCCA	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	140, 580
Mva1269I	GAATGC	2 cut(s)	468, 505
MvaI	CCWGG	2 cut(s)	140, 580
MwoI	GCNNNNNNNGC	3 cut(s)	210, 536, 543
NarI	GGCGCC	1 cut(s)	537
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	450, 613
NlaIV	GGNNCC	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	611
PctI	GAATGC	2 cut(s)	468, 505
PfeI	GAWTC	3 cut(s)	302, 380, 562
PkrI	GCNGC	3 cut(s)	212, 658, 672
PluTI	GGCGCC	1 cut(s)	540
Ppu21I	YACGTR	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	138, 578
PspGI	CCWGG	2 cut(s)	138, 578
PspN4I	GGNNCC	1 cut(s)	538
PstI	CTGCAG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	482, 754
SatI	GCNGC	3 cut(s)	211, 657, 671
Sau3AI	GATC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	140, 580
SduI	GDGCHC	2 cut(s)	596, 716
SexAI	ACCWGGT	1 cut(s)	578
SfaNI	GCATC	3 cut(s)	84, 260, 673
SfcI	CTRYAG	2 cut(s)	557, 634
SfoI	GGCGCC	1 cut(s)	538
SnaBI	TACGTA	1 cut(s)	320
Sse9I	AATT	4 cut(s)	102, 239, 494, 751
SsiI	CCGC	3 cut(s)	334, 656, 659
SspDI	GGCGCC	1 cut(s)	536
SspMI	CTAG	2 cut(s)	236, 260
StyD4I	CCNGG	2 cut(s)	138, 578
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	11, 300
TasI	AATT	4 cut(s)	102, 239, 494, 751
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	3 cut(s)	302, 380, 562
Tru1I	TTAA	2 cut(s)	482, 754
Tru9I	TTAA	2 cut(s)	482, 754
TscAI	CASTG	3 cut(s)	34, 166, 643
TseI	GCWGC	2 cut(s)	210, 670
TspDTI	ATGAA	5 cut(s)	144, 265, 420, 531, 626
TspRI	CASTG	3 cut(s)	34, 166, 643
XapI	RAATTY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	2 cut(s)	236, 260
Zsp2I	ATGCAT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.