Prupe.1G286300_v2.0.a1

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000289
Physical Location & Seq
Reverse (-)
28680129 .. 28681656
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G286300.1

Sequence Viewer

Length: 693 bp
ATGGCCAGAGAAAGTCGTCCAAGGAAATTGGAGGAAGGTGATGATGATGATCGAATTCGGGAGCTCCCAACCGAAATCATATTCTCTCATATACTCCCACGGCTACCAGCAGAGGATCTGATGACGCGGTGCAGATGCGTATGCAAGTCTTGGTCCTCCCTCATCCGCAGCCCTTTCTTTGTCGCCGCCTTCTCCAACTTTCGCAAGAACACCACTAACTTCATTTTCAAAAACGGTAACCGCTTCTTCTCTTCAAAAATAGAGGAGGAGCAACAAGGAGAGGGAGGAGGGAATAAATATAAGGTTCCAATTCCAACACCCCTCGCAGAAATTTCATACCGGAATGGGTGCATAGCTCTCGACCATTACAACACTAATGTTCATAAACTGCAGAGCGTCCGTGGCTTGGTTTGTTCATCCTTTAAGTGTGGCCCTGTTTTCATACTTAACCCTACTACTCGAGAGTCCATTCAACTTCCCCATGTAAATACCCGTGGATTTGATACATATCACTTTGGCTTCACTCCCCTTACCAACGAGTATAAGGTTCTCCAGGTCATCTCATCCTGGGAACTTGGAAAATGGAATCATTGGTTGAACGTATACACCCTAGGCCTAGGTAGGGATTCTTCGTGGAGGCCATTGCAGGTAGACCCTGCAATGGAGATATGGACCTTACACACAGGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

231

Amino Acids

26.49

Weight (kDa)

8.74

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 637
AccI GTMKAC 2 cut(s) 603, 651
AccII CGCG 1 cut(s) 127
AciI CCGC 4 cut(s) 127, 166, 186, 241
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 54, 330
AfiI CCNNNNNNNGG 3 cut(s) 406, 622, 661
AgsI TTSAA 4 cut(s) 229, 255, 473, 598
AjnI CCWGG 2 cut(s) 552, 566
AluBI AGCT 2 cut(s) 64, 356
AluI AGCT 2 cut(s) 64, 356
Alw21I GWGCWC 1 cut(s) 66
AlwI GGATC 1 cut(s) 123
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 4 cut(s) 3, 430, 613, 638
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 2 cut(s) 54, 330
AspA2I CCTAGG 2 cut(s) 610, 616
AspS9I GGNCC 3 cut(s) 153, 431, 672
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 459
AvaII GGWCC 2 cut(s) 153, 672
AvrII CCTAGG 2 cut(s) 610, 616
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 613, 645
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 180
BceAI ACGGC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 2 cut(s) 554, 568
BfaI CTAG 2 cut(s) 611, 617
BfmI CTRYAG 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 637
BisI GCNGC 2 cut(s) 169, 186
BlnI CCTAGG 2 cut(s) 610, 616
BlsI GCNGC 2 cut(s) 170, 187
Bme1390I CCNGG 2 cut(s) 554, 568
Bme18I GGWCC 2 cut(s) 153, 672
BmeT110I CYCGRG 1 cut(s) 459
BmgT120I GGNCC 3 cut(s) 153, 431, 672
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 2 cut(s) 554, 568
BmsI GCATC 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 536
BsaBI GATNNNNATC 2 cut(s) 48, 507
BsaJI CCNNGG 7 cut(s) 20, 98, 400, 493, 567, 610, 616
BsaWI WCCGGW 1 cut(s) 339
Bsc4I CCNNNNNNNGG 3 cut(s) 406, 622, 661
Bse3DI GCAATG 2 cut(s) 641, 666
Bse8I GATNNNNATC 2 cut(s) 48, 507
BseBI CCWGG 2 cut(s) 554, 568
BseDI CCNNGG 7 cut(s) 20, 98, 400, 493, 567, 610, 616
BseGI GGATG 3 cut(s) 162, 416, 563
BseJI GATNNNNATC 2 cut(s) 48, 507
BseLI CCNNNNNNNGG 3 cut(s) 406, 622, 661
BseMI GCAATG 2 cut(s) 641, 666
BseRI GAGGAG 3 cut(s) 278, 281, 300
BseXI GCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 127
BshFI GGCC 4 cut(s) 5, 432, 615, 640
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 1 cut(s) 340
BslI CCNNNNNNNGG 3 cut(s) 406, 622, 661
BsnI GGCC 4 cut(s) 5, 432, 615, 640
BsoBI CYCGRG 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 49, 115
BspACI CCGC 4 cut(s) 127, 166, 186, 241
BspANI GGCC 4 cut(s) 5, 432, 615, 640
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 393
BspMI ACCTGC 1 cut(s) 637
BspPI GGATC 1 cut(s) 123
BsrDI GCAATG 2 cut(s) 641, 666
BssECI CCNNGG 7 cut(s) 20, 98, 400, 493, 567, 610, 616
BssMI GATC 2 cut(s) 49, 115
BssNAI GTATAC 1 cut(s) 604
BssT1I CCWWGG 3 cut(s) 20, 610, 616
Bst1107I GTATAC 1 cut(s) 604
Bst2UI CCWGG 2 cut(s) 554, 568
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 256
BstDSI CCRYGG 3 cut(s) 98, 400, 493
BstEII GGTNACC 1 cut(s) 236
BstF5I GGATG 3 cut(s) 162, 416, 563
BstFNI CGCG 1 cut(s) 127
BstKTI GATC 2 cut(s) 52, 118
BstMBI GATC 2 cut(s) 49, 115
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNI CCWGG 2 cut(s) 554, 568
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 552, 566
BstSFI CTRYAG 1 cut(s) 389
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BstZ17I GTATAC 1 cut(s) 604
BsuRI GGCC 4 cut(s) 5, 432, 615, 640
BtgI CCRYGG 3 cut(s) 98, 400, 493
BtsCI GGATG 3 cut(s) 162, 416, 563
BveI ACCTGC 1 cut(s) 637
Cfr13I GGNCC 3 cut(s) 153, 431, 672
CseI GACGC 2 cut(s) 133, 385
CviAII CATG 1 cut(s) 482
DpnI GATC 2 cut(s) 51, 117
DpnII GATC 2 cut(s) 49, 115
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 20, 610, 616
Eco147I AGGCCT 1 cut(s) 615
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 153, 672
Eco53kI GAGCTC 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 459
Eco91I GGTNACC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 54
EcoRII CCWGG 2 cut(s) 552, 566
EcoT14I CCWWGG 3 cut(s) 20, 610, 616
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 3 cut(s) 20, 610, 616
FaeI CATG 1 cut(s) 485
FatI CATG 1 cut(s) 481
FblI GTMKAC 2 cut(s) 603, 651
Fnu4HI GCNGC 2 cut(s) 169, 186
FokI GGATG 3 cut(s) 149, 403, 550
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 169, 186
FspBI CTAG 2 cut(s) 611, 617
GluI GCNGC 2 cut(s) 169, 186
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 4 cut(s) 5, 432, 615, 640
HapII CCGG 1 cut(s) 340
HgaI GACGC 2 cut(s) 133, 385
Hin1II CATG 1 cut(s) 485
HinfI GANTC 3 cut(s) 464, 586, 626
HpaII CCGG 1 cut(s) 340
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 604, 652
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 3 cut(s) 59, 359, 461
Hpy8I GTNNAC 2 cut(s) 604, 652
HpyAV CCTTC 2 cut(s) 29, 199
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 6 cut(s) 132, 144, 351, 391, 646, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 1 cut(s) 485
Kzo9I GATC 2 cut(s) 49, 115
LmnI GCTCC 3 cut(s) 61, 69, 268
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 125
MaeI CTAG 2 cut(s) 611, 617
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 51, 117
MboI GATC 2 cut(s) 49, 115
MboII GAAGA 3 cut(s) 238, 243, 621
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 66
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 26, 54, 309, 330
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 2 cut(s) 219, 338
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 423, 447
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 2 cut(s) 554, 568
MvaI CCWGG 2 cut(s) 554, 568
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 402
NdeII GATC 2 cut(s) 49, 115
NlaIII CATG 1 cut(s) 485
NlaIV GGNNCC 1 cut(s) 306
PaeR7I CTCGAG 1 cut(s) 459
PceI AGGCCT 1 cut(s) 615
PfeI GAWTC 2 cut(s) 586, 626
PkrI GCNGC 2 cut(s) 170, 187
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 552, 566
PspEI GGTNACC 1 cut(s) 236
PspGI CCWGG 2 cut(s) 552, 566
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 3 cut(s) 153, 431, 672
PstI CTGCAG 1 cut(s) 393
PsuI RGATCY 1 cut(s) 115
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 423, 447
SatI GCNGC 2 cut(s) 169, 186
Sau3AI GATC 2 cut(s) 49, 115
Sau96I GGNCC 3 cut(s) 153, 431, 672
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 2 cut(s) 554, 568
SduI GDGCHC 1 cut(s) 66
SfaNI GCATC 1 cut(s) 125
SfcI CTRYAG 1 cut(s) 389
Sfr274I CTCGAG 1 cut(s) 459
SinI GGWCC 2 cut(s) 153, 672
SlaI CTCGAG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
Sse9I AATT 4 cut(s) 26, 54, 309, 330
SseBI AGGCCT 1 cut(s) 615
SsiI CCGC 4 cut(s) 127, 166, 186, 241
SspMI CTAG 2 cut(s) 611, 617
SstI GAGCTC 1 cut(s) 66
StuI AGGCCT 1 cut(s) 615
StyD4I CCNGG 2 cut(s) 552, 566
StyI CCWWGG 3 cut(s) 20, 610, 616
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 603
TaqI TCGA 3 cut(s) 52, 360, 460
TasI AATT 4 cut(s) 26, 54, 309, 330
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 2 cut(s) 586, 626
Tru1I TTAA 2 cut(s) 423, 447
Tru9I TTAA 2 cut(s) 423, 447
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 5 cut(s) 211, 324, 371, 405, 430
TspGWI ACGGA 1 cut(s) 389
VpaK11BI GGWCC 2 cut(s) 153, 672
XapI RAATTY 2 cut(s) 54, 330
XhoI CTCGAG 1 cut(s) 459
XmaJI CCTAGG 2 cut(s) 610, 616
XmiI GTMKAC 2 cut(s) 603, 651
XspI CTAG 2 cut(s) 611, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.