Rroxscaffold_4G00324740

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000289
Physical Location & Seq
Forward (+)
56390860 .. 56394478
3619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324740.1

Sequence Viewer

Length: 633 bp
ATGGGTCGTGGGTGCTACGTCGAGCGATGTGGCGTCATGGCGGCATGGGTCGAGGGGCTTCAAGGCGACATGGGTTTCATGGGTGCCGGATTGGCCGGGCGGCATGGGTCGAAGGGCTACATGGCGACATGGGTTGAGATTTCGTGTCCTGCACACTTGTGGCGGCGAGAGAGTAGGGCGGCGCTGCATCGAGCAACACTACGGCATCGAGCTGATACTCCCAAGGCTACCGACCAAGTTCGTGATCCGTGGCATGGCGTCTGCAAATCATGGTCCTCTCTCCCTTCTTTTCTTACCATCCACCGGATCTTCCGGTGTAGCCCTTCCACTTACCTCCTCTTCACCACGTCGGACGAGACCACAGCAACCACACTTCAACACTTTCACTCTAAGACTATCATATTTACTTCGAGCTGGGAGAAATTAGGATGCCCTATTCCGTTGGGTACAATCCACACAGGTACTGAGCTCCTGCTCAAGCCTACATTACGGGACTCGGCTAATGTCTACGTTCATCTTTACAATATAGAGAGCGATAGCTTTTGGGAATGTAAGATTAGTTTGCCGGTGAAGATTGGACTATGGAGCTTGCTTACTAGTTATGATGAAAGTGTGATCTCCTTGAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

210

Amino Acids

23.58

Weight (kDa)

8.71

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 507
AciI CCGC 4 cut(s) 41, 100, 163, 179
AclWI GGATC 2 cut(s) 239, 314
AcoI YGGCCR 1 cut(s) 93
AcyI GRCGYC 2 cut(s) 33, 258
AfaI GTAC 2 cut(s) 448, 463
AfiI CCNNNNNNNGG 2 cut(s) 254, 303
AgsI TTSAA 2 cut(s) 62, 377
AhlI ACTAGT 1 cut(s) 596
AjiI CACGTC 1 cut(s) 348
AleI CACNNNNGTG 1 cut(s) 157
AluBI AGCT 5 cut(s) 212, 414, 469, 540, 588
AluI AGCT 5 cut(s) 212, 414, 469, 540, 588
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 2 cut(s) 239, 314
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 334, 580
AvaII GGWCC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 171
BccI CCATC 1 cut(s) 305
BceAI ACGGC 1 cut(s) 218
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 350
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 1 cut(s) 597
BfoI RGCGCY 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 5 cut(s) 42, 101, 164, 180, 185
BlsI GCNGC 5 cut(s) 43, 102, 165, 181, 186
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 273
BmgBI CACGTC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 3 cut(s) 196, 214, 419
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 97
BsaHI GRCGYC 2 cut(s) 33, 258
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 222, 248
BsaWI WCCGGW 2 cut(s) 303, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 303
Bse118I RCCGGY 1 cut(s) 565
BseDI CCNNGG 2 cut(s) 222, 248
BseGI GGATG 2 cut(s) 297, 434
BseLI CCNNNNNNNGG 2 cut(s) 254, 303
BseMII CTCAG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 414
BsgI GTGCAG 1 cut(s) 135
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 5 cut(s) 87, 96, 304, 313, 566
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 254, 303
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 4 cut(s) 244, 306, 615, 626
BspACI CCGC 4 cut(s) 41, 100, 163, 179
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 457
BspHI TCATGA 1 cut(s) 629
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 2 cut(s) 239, 314
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 565
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 2 cut(s) 222, 248
BssMI GATC 4 cut(s) 244, 306, 615, 626
BssNI GRCGYC 2 cut(s) 33, 258
BssT1I CCWWGG 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 344
BstACI GRCGYC 2 cut(s) 33, 258
BstC8I GCNNGC 1 cut(s) 590
BstDEI CTNAG 2 cut(s) 390, 465
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 2 cut(s) 297, 434
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 4 cut(s) 247, 309, 618, 629
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 4 cut(s) 244, 306, 615, 626
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 248
BtgZI GCGATG 1 cut(s) 40
BtrI CACGTC 1 cut(s) 348
BtsCI GGATG 2 cut(s) 297, 434
Cac8I GCNNGC 1 cut(s) 590
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 1 cut(s) 629
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 1 cut(s) 273
CseI GACGC 2 cut(s) 22, 247
Csp6I GTAC 2 cut(s) 447, 462
CviQI GTAC 2 cut(s) 447, 462
DdeI CTNAG 2 cut(s) 390, 465
DpnI GATC 4 cut(s) 246, 308, 617, 628
DpnII GATC 4 cut(s) 244, 306, 615, 626
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 469
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 471
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 222
FaqI GGGAC 1 cut(s) 506
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 5 cut(s) 42, 101, 164, 180, 185
FokI GGATG 2 cut(s) 284, 441
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 5 cut(s) 42, 101, 164, 180, 185
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 183
GluI GCNGC 5 cut(s) 42, 101, 164, 180, 185
GsaI CCCAGC 1 cut(s) 418
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 95
HapII CCGG 5 cut(s) 87, 96, 304, 313, 566
HgaI GACGC 2 cut(s) 22, 247
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 2 cut(s) 33, 258
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 1 cut(s) 494
HpaII CCGG 5 cut(s) 87, 96, 304, 313, 566
HphI GGTGA 2 cut(s) 334, 580
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 2 cut(s) 242, 630
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 2 cut(s) 23, 352
HpyAV CCTTC 3 cut(s) 106, 294, 333
HpyCH4IV ACGT 3 cut(s) 18, 347, 510
HpyCH4V TGCA 3 cut(s) 152, 187, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 390, 465
HpySE526I ACGT 3 cut(s) 18, 347, 510
Hsp92I GRCGYC 2 cut(s) 33, 258
HspAI GCGC 1 cut(s) 182
Kzo9I GATC 4 cut(s) 244, 306, 615, 626
LmnI GCTCC 2 cut(s) 474, 585
LpnPI CCDG 9 cut(s) 100, 109, 162, 317, 326, 400, 444, 485, 579
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 3 cut(s) 196, 214, 419
MaeI CTAG 1 cut(s) 597
MaeII ACGT 3 cut(s) 18, 347, 510
MalI GATC 4 cut(s) 246, 308, 617, 628
MboI GATC 4 cut(s) 244, 306, 615, 626
MboII GAAGA 3 cut(s) 301, 331, 583
MflI RGATCY 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 1 cut(s) 422
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 4 cut(s) 46, 286, 344, 347
MslI CAYNNNNRTG 1 cut(s) 157
MspI CCGG 5 cut(s) 87, 96, 304, 313, 566
MspR9I CCNGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 97
NdeII GATC 4 cut(s) 244, 306, 615, 626
NlaIV GGNNCC 1 cut(s) 85
NmeAIII GCCGAG 1 cut(s) 476
OliI CACNNNNGTG 1 cut(s) 157
PagI TCATGA 1 cut(s) 629
PkrI GCNGC 5 cut(s) 43, 102, 165, 181, 186
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 471
PspFI CCCAGC 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 273
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 2 cut(s) 448, 463
RsaNI GTAC 2 cut(s) 447, 462
RseI CAYNNNNRTG 1 cut(s) 157
SacI GAGCTC 1 cut(s) 471
SatI GCNGC 5 cut(s) 42, 101, 164, 180, 185
Sau3AI GATC 4 cut(s) 244, 306, 615, 626
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 3 cut(s) 196, 214, 419
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 157
SmlI CTYRAG 2 cut(s) 476, 622
SmoI CTYRAG 2 cut(s) 476, 622
SpeI ACTAGT 1 cut(s) 596
Sse9I AATT 1 cut(s) 422
SsiI CCGC 4 cut(s) 41, 100, 163, 179
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 222
TaiI ACGT 3 cut(s) 21, 350, 513
TaqI TCGA 6 cut(s) 21, 51, 110, 190, 208, 410
TasI AATT 1 cut(s) 422
TauI GCSGC 4 cut(s) 44, 103, 166, 182
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 67, 503, 621
TspGWI ACGGA 2 cut(s) 237, 429
VpaK11BI GGWCC 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.