Rh4DG408400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000289
Physical Location & Seq
Forward (+)
62096729 .. 62097273
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG408400.1

Sequence Viewer

Length: 303 bp
ATGAGAGCCATCCCTATTCCGGAAGATTATATCCCGGAAGCAGAACTATGTGAATTGGATGGATGTCTAGCTCTAATAGATCCCGAGTCGTTTGACATTTGGTCTGAAGATGGCGAGCTGAAAGAACAAGACGACTGTATAGAGCTATGGATTTTGAAGGACTACCAAAATCATGTGTGGATTAAACACACTAGTAAAATTTTTCGGAGAAGTGAAATCATGTTGCCTGAACGGTTGCGTGGGCACGTTCGATTGGAGTTGCTTGCTACTTATGATGATGAAAACACTGTCCCCTTAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

100

Amino Acids

11.85

Weight (kDa)

4.48

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 19
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 19
AflII CTTAAG 1 cut(s) 295
AgsI TTSAA 1 cut(s) 157
AhdI GACNNNNNGTC 1 cut(s) 100
AhlI ACTAGT 1 cut(s) 191
AluBI AGCT 3 cut(s) 71, 118, 145
AluI AGCT 3 cut(s) 71, 118, 145
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 19
ApoI RAATTY 1 cut(s) 198
AsuC2I CCSGG 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 246
BccI CCATC 3 cut(s) 17, 53, 104
BcnI CCSGG 1 cut(s) 35
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 2 cut(s) 68, 192
BfrI CTTAAG 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 35
BmeRI GACNNNNNGTC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 35
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 19
BseGI GGATG 3 cut(s) 9, 64, 68
BseLI CCNNNNNNNGG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 20, 35
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 246
Bsp13I TCCGGA 1 cut(s) 19
Bsp143I GATC 1 cut(s) 79
BspEI TCCGGA 1 cut(s) 19
BspPI GGATC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 295
BssMI GATC 1 cut(s) 79
Bst4CI ACNGT 3 cut(s) 137, 234, 289
BstAFI CTTAAG 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 116, 264
BstF5I GGATG 3 cut(s) 9, 64, 68
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtsCI GGATG 3 cut(s) 9, 64, 68
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 116, 264
CviAII CATG 2 cut(s) 173, 220
CviJI RGCY 4 cut(s) 8, 71, 118, 145
CviKI_1 RGCY 4 cut(s) 8, 71, 118, 145
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DriI GACNNNNNGTC 1 cut(s) 100
Eam1105I GACNNNNNGTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 83
FaeI CATG 2 cut(s) 176, 223
FaiI YATR 7 cut(s) 30, 49, 140, 148, 174, 221, 273
FaqI GGGAC 1 cut(s) 275
FatI CATG 2 cut(s) 172, 219
FokI GGATG 2 cut(s) 71, 75
FspBI CTAG 2 cut(s) 68, 192
HapII CCGG 2 cut(s) 20, 35
Hin1II CATG 2 cut(s) 176, 223
HinfI GANTC 1 cut(s) 86
HpaII CCGG 2 cut(s) 20, 35
Hpy188I TCNGA 2 cut(s) 106, 207
Hpy188III TCNNGA 2 cut(s) 20, 83
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 3 cut(s) 137, 234, 289
HpyCH4IV ACGT 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 176, 223
Kpn2I TCCGGA 1 cut(s) 19
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 33, 48, 240
MaeI CTAG 2 cut(s) 68, 192
MaeII ACGT 1 cut(s) 246
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 35, 119
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 53, 198
MlyI GAGTC 1 cut(s) 95
MroI TCCGGA 1 cut(s) 19
MseI TTAA 2 cut(s) 183, 296
MspCI CTTAAG 1 cut(s) 295
MspI CCGG 2 cut(s) 20, 35
MspR9I CCNGG 1 cut(s) 35
NciI CCSGG 1 cut(s) 35
NdeII GATC 1 cut(s) 79
NlaIII CATG 2 cut(s) 176, 223
PfoI TCCNGGA 1 cut(s) 33
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 79
SaqAI TTAA 2 cut(s) 183, 296
Sau3AI GATC 1 cut(s) 79
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 246
SetI ASST 4 cut(s) 73, 120, 147, 249
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SpeI ACTAGT 1 cut(s) 191
Sse9I AATT 2 cut(s) 53, 198
SspMI CTAG 2 cut(s) 68, 192
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 3 cut(s) 137, 234, 289
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 250
TasI AATT 2 cut(s) 53, 198
Tru1I TTAA 2 cut(s) 183, 296
Tru9I TTAA 2 cut(s) 183, 296
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 294
TspRI CASTG 1 cut(s) 292
Vha464I CTTAAG 1 cut(s) 295
XapI RAATTY 1 cut(s) 198
XspI CTAG 2 cut(s) 68, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.