Rmu_sc0035132.1_g000001

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035132.1
OG0000289
Physical Location & Seq
Forward (+)
32 .. 641
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035132.1_g000001.1.cds

Sequence Viewer

Length: 610 bp
atggaagttgaacctgatgttgcaaagttcatcccaagcgacatcatactctctcatatcctccccaagctacctgacaagtccctgatgaggtttaagtgcgtctgcaaatcttggtcctctctcatccgcgatcttttctttctccgggtatatgggaacttacataacagccccactacttacctcatcgtcttcttctggcaacacgagatcgaacccaaaagaccaaatcgctttctctctatgcaaatcagccaggaagggatttgtcctacacctcccatcgaccagctgcttgtaactctaagcagcaatccacatttgtcatccttttcacgggagcatgtatgccatgccatcgccgatgctggcttaatctgtctttttgattccacgtgtgaggatgacgcttccccagcttatgtctttgattccaacacccgagagtttattgctcttccagacactgtgcgggataaatcagcccgtccaaagtctccaaactatgagacagttagttatgctaattgtagcgggttcacacctcttgctaacgagtataaggttctccaagtgaaacatcgtttgtttttcaatccggatcggc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

203

Amino Acids

23.21

Weight (kDa)

6.37

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 601
AciI CCGC 3 cut(s) 130, 475, 537
AcvI CACGTG 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 90, 339
AflIII ACRYGT 1 cut(s) 398
AgsI TTSAA 2 cut(s) 11, 598
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 3 cut(s) 70, 295, 422
AluI AGCT 3 cut(s) 70, 295, 422
Alw26I GTCTC 2 cut(s) 504, 506
AlwNI CAGNNNCTG 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 444
Aor13HI TCCGGA 1 cut(s) 601
ApeKI GCWGC 2 cut(s) 295, 312
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 1 cut(s) 117
BauI CACGAG 1 cut(s) 209
BbrPI CACGTG 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 282, 324
BccI CCATC 2 cut(s) 293, 368
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 504, 506
BisI GCNGC 2 cut(s) 296, 313
BlsI GCNGC 2 cut(s) 297, 314
Bme1390I CCNGG 2 cut(s) 149, 260
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 149, 260
BmsI GCATC 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 399
BsaWI WCCGGW 1 cut(s) 601
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 339
BseAI TCCGGA 1 cut(s) 601
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 4 cut(s) 30, 126, 329, 412
BseLI CCNNNNNNNGG 2 cut(s) 90, 339
BseXI GCAGC 2 cut(s) 282, 324
BseYI CCCAGC 1 cut(s) 418
Bsh1236I CGCG 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 2 cut(s) 148, 602
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 90, 339
BsmAI GTCTC 2 cut(s) 504, 506
BsmFI GGGAC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 444
Bsp13I TCCGGA 1 cut(s) 601
Bsp143I GATC 3 cut(s) 133, 213, 604
BspACI CCGC 3 cut(s) 130, 475, 537
BspEI TCCGGA 1 cut(s) 601
BspFNI CGCG 1 cut(s) 132
BspQI GCTCTTC 1 cut(s) 465
BssMI GATC 3 cut(s) 133, 213, 604
BssSI CACGAG 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 472, 517
Bst6I CTCTTC 1 cut(s) 465
BstBAI YACGTR 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 308
BstF5I GGATG 4 cut(s) 30, 126, 329, 412
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 3 cut(s) 136, 216, 607
BstMAI GTCTC 2 cut(s) 504, 506
BstMBI GATC 3 cut(s) 133, 213, 604
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 147, 258
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 282, 324
BstV2I GAAGAC 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 346
BtsCI GGATG 4 cut(s) 30, 126, 329, 412
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 2 cut(s) 91, 419
CviAII CATG 2 cut(s) 347, 356
CviJI RGCY 7 cut(s) 70, 174, 258, 295, 375, 422, 488
CviKI_1 RGCY 7 cut(s) 70, 174, 258, 295, 375, 422, 488
DdeI CTNAG 1 cut(s) 308
DpnI GATC 3 cut(s) 135, 215, 606
DpnII GATC 3 cut(s) 133, 213, 604
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 117
Eco72I CACGTG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 258
FaeI CATG 2 cut(s) 350, 359
FaqI GGGAC 1 cut(s) 67
FatI CATG 2 cut(s) 346, 355
FauI CCCGC 2 cut(s) 468, 530
Fnu4HI GCNGC 2 cut(s) 296, 313
FokI GGATG 4 cut(s) 17, 113, 316, 419
Fsp4HI GCNGC 2 cut(s) 296, 313
GluI GCNGC 2 cut(s) 296, 313
GsaI CCCAGC 1 cut(s) 422
HapII CCGG 2 cut(s) 148, 602
HgaI GACGC 2 cut(s) 91, 419
Hin1II CATG 2 cut(s) 350, 359
HinfI GANTC 2 cut(s) 392, 434
HpaII CCGG 2 cut(s) 148, 602
Hpy166II GTNNAC 1 cut(s) 543
Hpy188III TCNNGA 2 cut(s) 464, 602
Hpy8I GTNNAC 1 cut(s) 543
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 472, 517
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 3 cut(s) 23, 108, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 2 cut(s) 350, 359
Kpn2I TCCGGA 1 cut(s) 601
Kzo9I GATC 3 cut(s) 133, 213, 604
LguI GCTCTTC 1 cut(s) 465
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 2 cut(s) 282, 324
LweI GCATC 1 cut(s) 358
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 301
MalI GATC 3 cut(s) 135, 215, 606
MboI GATC 3 cut(s) 133, 213, 604
MboII GAAGA 3 cut(s) 187, 190, 452
MluCI AATT 1 cut(s) 529
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 7 cut(s) 71, 84, 130, 197, 291, 397, 558
MroI TCCGGA 1 cut(s) 601
MseI TTAA 2 cut(s) 96, 377
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 2 cut(s) 148, 602
MspR9I CCNGG 2 cut(s) 149, 260
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 419
NciI CCSGG 1 cut(s) 149
NdeII GATC 3 cut(s) 133, 213, 604
NlaIII CATG 2 cut(s) 350, 359
NspI RCATGY 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 392, 434
PkrI GCNGC 2 cut(s) 297, 314
PmaCI CACGTG 1 cut(s) 399
PmlI CACGTG 1 cut(s) 399
Ppu21I YACGTR 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 258
PspCI CACGTG 1 cut(s) 399
PspFI CCCAGC 1 cut(s) 418
PspGI CCWGG 1 cut(s) 258
PspPI GGNCC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 465
SaqAI TTAA 2 cut(s) 96, 377
SatI GCNGC 2 cut(s) 296, 313
Sau3AI GATC 3 cut(s) 133, 213, 604
Sau96I GGNCC 1 cut(s) 117
ScrFI CCNGG 2 cut(s) 149, 260
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 1 cut(s) 117
Sse9I AATT 1 cut(s) 529
SsiI CCGC 3 cut(s) 130, 475, 537
StyD4I CCNGG 2 cut(s) 147, 258
TaaI ACNGT 2 cut(s) 472, 517
TaiI ACGT 1 cut(s) 401
TaqI TCGA 2 cut(s) 216, 288
TasI AATT 1 cut(s) 529
TfiI GAWTC 2 cut(s) 392, 434
Tru1I TTAA 2 cut(s) 96, 377
Tru9I TTAA 2 cut(s) 96, 377
TscAI CASTG 1 cut(s) 475
TseI GCWGC 2 cut(s) 295, 312
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 117
XceI RCATGY 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.