RLG00000019742

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000289
Physical Location & Seq
Forward (+)
56178862 .. 56180058
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019742

Sequence Viewer

Length: 1197 bp
ATGCCTATAGAATATTACAACATTGCAAAGCTTCCCATCGACATCATATTGTTTGAGATATTCTCAAGATTACCGGTCAAGTCCTTGATACGGTTTAGGTGCGTATGCAAATCTTGGTCCTCCCTCATCCGCCATCCTTTCTTTGTCAGAACCTACCAAAAGTTACAGACTCAATCATGCCATAACCACCACCTCCTTCTCAGATTTTGGAACCCAGTCACGAGTCGGTGGCACTTGCTCTCCGCACAACTCAACCAAGAAGGAAGTATTAGCACCACCGACATCCTTCTAAGCCATCATGGACGGTTAGTATGCTCCAATATGATAAGTATCAATGGCTTAATCTGTGTTTATGATAAAGCGGACCTAGCTGATGATGATAATCGTCTTCATCATCATGCACCTAATCAGCCGGACAATCCCGTTATATTTAACCCCTGCACCCGAGAGTCTATCACTGTTCCCCATGCCTTAAATACTAGCCAGAGCCACTACTTGGTTCATTCGACTTGCATTGGGTTCAGTCCTCAGACAAACGAGAATAAGGTTCTCCAAATACTAGTGCGGCGCCGTCAAACCAACGAAAGCAGTTTCATATTCAAGATTTTCACTCTTGGTGATGCAAGTAGTACATGGAGGCATCTAGAGATAGAAGACAAAGACTTCGATGATCTTGCTCTTGATTGTCAAAATTTACAGTTTAAGCAGAGATCTGTGTTCCTCCAGGGGGCCAGACATTGGCTGCAAACGAATATTAAGGATCAACTTGTTATATTAGTTTTTGACTTTGAACAAGAGCGATTCAGAGTAATCCCATTTGCTCAAGAATATTATAAAGATCCTGGTGGTGCTTATCAGTTTGTGGAAATGGTTGAAGTGAATGAATGTGTTGCAATAAATGATGTTGACCTCTCATATGAAGGAAATGTTATAAGTTTATGGATTTTGAAGGATTACCAACATCTGGTGTGGGTTAAAGAGAGTATCATCTTTCCCACTAAATGGGAGGAGTTGGGATTCCCTAGTCCAGTGTGCTCTATCTACACAGGCGAGCTCCTGCTCATAGGGCTATCTTGTATGGGTAAGGTGCTTCTTTACAACCAAAACAATAAGCGTTTTACGACGATTCAAGATCCTATTCAGCAAATCTTGGGTAGTTATCATGAAAGCATTATTCCCCTTGCCGCTTCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

399

Amino Acids

46.12

Weight (kDa)

6.27

Isoelectric Point (pI)

55.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 48 1.9e-10 F-box domain
F-box-like PF12937 10 - 48 3.7e-08 F-box-like
FBA_3 PF08268 76 - 376 7.2e-26 F-box associated beta propeller domain
FBA_1 PF07734 89 - 319 1.8e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 834, 932
AccB1I GGYRCC 1 cut(s) 567
AccB7I CCANNNNNTGG 4 cut(s) 496, 738, 964, 1002
AciI CCGC 5 cut(s) 130, 243, 362, 565, 1185
AclWI GGATC 3 cut(s) 768, 833, 1127
AcsI RAATTY 1 cut(s) 691
AcyI GRCGYC 1 cut(s) 568
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 6 cut(s) 90, 496, 727, 738, 964, 1002
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 5 cut(s) 601, 791, 875, 949, 1130
AhlI ACTAGT 1 cut(s) 559
AjnI CCWGG 2 cut(s) 723, 841
AluBI AGCT 3 cut(s) 31, 371, 1054
AluI AGCT 3 cut(s) 31, 371, 1054
Alw21I GWGCWC 2 cut(s) 1037, 1056
AlwI GGATC 3 cut(s) 768, 833, 1127
Ama87I CYCGRG 1 cut(s) 444
AoxI GGCC 1 cut(s) 729
ApeKI GCWGC 1 cut(s) 742
ApoI RAATTY 1 cut(s) 691
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
AsiGI ACCGGT 1 cut(s) 73
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 3 cut(s) 117, 364, 729
AsuHPI GGTGA 1 cut(s) 629
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 2 cut(s) 117, 364
BanI GGYRCC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 1056
BauI CACGAG 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 380, 660
Bbv12I GWGCWC 2 cut(s) 1037, 1056
BbvI GCAGC 1 cut(s) 729
BccI CCATC 3 cut(s) 44, 141, 303
BceAI ACGGC 1 cut(s) 555
BcgI CGANNNNNNTGC 2 cut(s) 656, 690
BciT130I CCWGG 2 cut(s) 725, 843
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 5 cut(s) 368, 480, 560, 644, 1023
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 571
BglII AGATCT 1 cut(s) 710
BisI GCNGC 3 cut(s) 566, 743, 1185
BlsI GCNGC 3 cut(s) 567, 744, 1186
Bme1390I CCNGG 2 cut(s) 725, 843
Bme18I GGWCC 2 cut(s) 117, 364
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 3 cut(s) 117, 364, 729
BmiI GGNNCC 3 cut(s) 212, 569, 730
BmrFI CCNGG 2 cut(s) 725, 843
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 2 cut(s) 610, 649
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 2 cut(s) 380, 660
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 1 cut(s) 707
BpuEI CTTGAG 2 cut(s) 49, 807
BsaBI GATNNNNATC 2 cut(s) 329, 381
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 724
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 6 cut(s) 90, 496, 727, 738, 964, 1002
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 215, 1028
Bse3DI GCAATG 1 cut(s) 21
Bse8I GATNNNNATC 2 cut(s) 329, 381
BseBI CCWGG 2 cut(s) 725, 843
BseDI CCNNGG 1 cut(s) 724
BseGI GGATG 3 cut(s) 126, 133, 282
BseJI GATNNNNATC 2 cut(s) 329, 381
BseLI CCNNNNNNNGG 6 cut(s) 90, 496, 727, 738, 964, 1002
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 214, 542
BseNI ACTGG 2 cut(s) 215, 1028
BseRI GAGGAG 1 cut(s) 1022
BseXI GCAGC 1 cut(s) 729
BsgI GTGCAG 1 cut(s) 424
BshFI GGCC 1 cut(s) 731
BshNI GGYRCC 1 cut(s) 567
BshTI ACCGGT 1 cut(s) 73
BsiHKAI GWGCWC 2 cut(s) 1037, 1056
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 2 cut(s) 74, 413
BslI CCNNNNNNNGG 6 cut(s) 90, 496, 727, 738, 964, 1002
BsnI GGCC 1 cut(s) 731
BsoBI CYCGRG 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 1037, 1056
Bsp143I GATC 5 cut(s) 670, 710, 760, 838, 1132
BspACI CCGC 5 cut(s) 130, 243, 362, 565, 1185
BspANI GGCC 1 cut(s) 731
BspCNI CTCAG 2 cut(s) 213, 541
BspHI TCATGA 1 cut(s) 1162
BspLI GGNNCC 3 cut(s) 212, 569, 730
BspPI GGATC 3 cut(s) 768, 833, 1127
BspT107I GGYRCC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 2 cut(s) 215, 1028
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 5 cut(s) 670, 710, 760, 838, 1132
BssNI GRCGYC 1 cut(s) 568
BssSI CACGAG 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 220
Bst2UI CCWGG 2 cut(s) 725, 843
Bst4CI ACNGT 4 cut(s) 93, 306, 460, 699
BstACI GRCGYC 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 1052
BstDEI CTNAG 3 cut(s) 200, 290, 528
BstF5I GGATG 3 cut(s) 126, 133, 282
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 5 cut(s) 673, 713, 763, 841, 1135
BstMBI GATC 5 cut(s) 670, 710, 760, 838, 1132
BstMWI GCNNNNNNNGC 2 cut(s) 368, 1066
BstNI CCWGG 2 cut(s) 725, 843
BstSCI CCNGG 2 cut(s) 723, 841
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 729
BstV2I GAAGAC 2 cut(s) 380, 660
BstX2I RGATCY 3 cut(s) 710, 838, 1132
BstYI RGATCY 3 cut(s) 710, 838, 1132
BsuRI GGCC 1 cut(s) 731
BtsCI GGATG 3 cut(s) 126, 133, 282
BtsIMutI CAGTG 2 cut(s) 456, 1035
Cac8I GCNNGC 1 cut(s) 1052
CciI TCATGA 1 cut(s) 1162
CfoI GCGC 1 cut(s) 570
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 3 cut(s) 117, 364, 729
Csp6I GTAC 1 cut(s) 630
CspAI ACCGGT 1 cut(s) 73
CviAII CATG 7 cut(s) 177, 299, 398, 467, 633, 1163, 1194
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 3 cut(s) 200, 290, 528
DinI GGCGCC 1 cut(s) 569
DpnI GATC 5 cut(s) 672, 712, 762, 840, 1134
DpnII GATC 5 cut(s) 670, 710, 760, 838, 1132
EciI GGCGGA 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 1054
Eco24I GRGCYC 1 cut(s) 1056
Eco47I GGWCC 2 cut(s) 117, 364
Eco53kI GAGCTC 1 cut(s) 1054
Eco88I CYCGRG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 1054
EcoRII CCWGG 2 cut(s) 723, 841
EcoT38I GRGCYC 1 cut(s) 1056
EgeI GGCGCC 1 cut(s) 569
EheI GGCGCC 1 cut(s) 569
FaeI CATG 7 cut(s) 180, 302, 401, 470, 636, 1166, 1197
FatI CATG 7 cut(s) 176, 298, 397, 466, 632, 1162, 1193
FauNDI CATATG 1 cut(s) 916
Fnu4HI GCNGC 3 cut(s) 566, 743, 1185
FokI GGATG 3 cut(s) 113, 120, 269
FriOI GRGCYC 1 cut(s) 1056
Fsp4HI GCNGC 3 cut(s) 566, 743, 1185
FspBI CTAG 5 cut(s) 368, 480, 560, 644, 1023
GlaI GCGC 1 cut(s) 569
GluI GCNGC 3 cut(s) 566, 743, 1185
GsuI CTGGAG 1 cut(s) 707
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 1 cut(s) 731
HapII CCGG 2 cut(s) 74, 413
HhaI GCGC 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 7 cut(s) 180, 302, 401, 470, 636, 1166, 1197
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 6 cut(s) 169, 223, 449, 801, 1017, 1126
HpaII CCGG 2 cut(s) 74, 413
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 1 cut(s) 907
Hpy188I TCNGA 4 cut(s) 149, 203, 531, 806
Hpy188III TCNNGA 8 cut(s) 66, 220, 601, 644, 680, 824, 1130, 1163
Hpy8I GTNNAC 1 cut(s) 907
Hpy99I CGWCG 1 cut(s) 1126
HpyAV CCTTC 5 cut(s) 206, 254, 296, 914, 943
HpyCH4III ACNGT 4 cut(s) 93, 306, 460, 699
HpyCH4V TGCA 8 cut(s) 26, 108, 401, 441, 513, 623, 745, 893
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 1066
HpyF3I CTNAG 3 cut(s) 200, 290, 528
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 7 cut(s) 180, 302, 401, 470, 636, 1166, 1197
HspAI GCGC 1 cut(s) 568
KasI GGCGCC 1 cut(s) 567
Kzo9I GATC 5 cut(s) 670, 710, 760, 838, 1132
LmnI GCTCC 2 cut(s) 320, 1059
Lsp1109I GCAGC 1 cut(s) 729
LweI GCATC 2 cut(s) 610, 649
MaeI CTAG 5 cut(s) 368, 480, 560, 644, 1023
MaeIII GTNAC 2 cut(s) 162, 217
MalI GATC 5 cut(s) 672, 712, 762, 840, 1134
MboI GATC 5 cut(s) 670, 710, 760, 838, 1132
MboII GAAGA 2 cut(s) 380, 665
MflI RGATCY 3 cut(s) 710, 838, 1132
MhlI GDGCHC 2 cut(s) 1037, 1056
MluCI AATT 1 cut(s) 691
Mly113I GGCGCC 1 cut(s) 568
MlyI GAGTC 3 cut(s) 163, 232, 458
MnlI CCTC 8 cut(s) 130, 134, 203, 537, 630, 731, 920, 1000
MseI TTAA 6 cut(s) 341, 432, 473, 702, 756, 975
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 2 cut(s) 74, 413
MspR9I CCNGG 2 cut(s) 725, 843
MvaI CCWGG 2 cut(s) 725, 843
MwoI GCNNNNNNNGC 2 cut(s) 368, 1066
NarI GGCGCC 1 cut(s) 568
NdeI CATATG 1 cut(s) 916
NdeII GATC 5 cut(s) 670, 710, 760, 838, 1132
NlaIII CATG 7 cut(s) 180, 302, 401, 470, 636, 1166, 1197
NlaIV GGNNCC 3 cut(s) 212, 569, 730
NmuCI GTSAC 1 cut(s) 217
PagI TCATGA 1 cut(s) 1162
PfeI GAWTC 3 cut(s) 801, 1017, 1126
PflMI CCANNNNNTGG 4 cut(s) 496, 738, 964, 1002
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 3 cut(s) 567, 744, 1186
PleI GAGTC 3 cut(s) 163, 231, 457
PluTI GGCGCC 1 cut(s) 571
PpsI GAGTC 3 cut(s) 163, 231, 457
PsiI TTATAA 2 cut(s) 834, 932
Psp124BI GAGCTC 1 cut(s) 1056
Psp6I CCWGG 2 cut(s) 723, 841
PspGI CCWGG 2 cut(s) 723, 841
PspN4I GGNNCC 3 cut(s) 212, 569, 730
PspPI GGNCC 3 cut(s) 117, 364, 729
PsuI RGATCY 3 cut(s) 710, 838, 1132
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 1056
SaqAI TTAA 6 cut(s) 341, 432, 473, 702, 756, 975
SatI GCNGC 3 cut(s) 566, 743, 1185
Sau3AI GATC 5 cut(s) 670, 710, 760, 838, 1132
Sau96I GGNCC 3 cut(s) 117, 364, 729
SchI GAGTC 3 cut(s) 163, 232, 458
ScrFI CCNGG 2 cut(s) 725, 843
SduI GDGCHC 2 cut(s) 1037, 1056
SfaNI GCATC 2 cut(s) 610, 649
SfcI CTRYAG 1 cut(s) 6
SfoI GGCGCC 1 cut(s) 569
SinI GGWCC 2 cut(s) 117, 364
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 64, 822
SmoI CTYRAG 2 cut(s) 64, 822
SpeI ACTAGT 1 cut(s) 559
Sse9I AATT 1 cut(s) 691
SsiI CCGC 5 cut(s) 130, 243, 362, 565, 1185
SspDI GGCGCC 1 cut(s) 567
SspI AATATT 3 cut(s) 14, 754, 830
SspMI CTAG 5 cut(s) 368, 480, 560, 644, 1023
SstI GAGCTC 1 cut(s) 1056
StyD4I CCNGG 2 cut(s) 723, 841
TaaI ACNGT 4 cut(s) 93, 306, 460, 699
TaqI TCGA 3 cut(s) 39, 506, 666
TasI AATT 1 cut(s) 691
TatI WGTACW 1 cut(s) 629
TauI GCSGC 2 cut(s) 568, 1187
TfiI GAWTC 3 cut(s) 801, 1017, 1126
Tru1I TTAA 6 cut(s) 341, 432, 473, 702, 756, 975
Tru9I TTAA 6 cut(s) 341, 432, 473, 702, 756, 975
TscAI CASTG 2 cut(s) 463, 1035
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 742
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 6 cut(s) 380, 491, 583, 897, 933, 1179
TspRI CASTG 2 cut(s) 463, 1035
Van91I CCANNNNNTGG 4 cut(s) 496, 738, 964, 1002
VpaK11BI GGWCC 2 cut(s) 117, 364
XapI RAATTY 1 cut(s) 691
XbaI TCTAGA 1 cut(s) 643
XspI CTAG 5 cut(s) 368, 480, 560, 644, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.