Prupe.1G285600_v2.0.a1

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000289
Physical Location & Seq
Forward (+)
28654077 .. 28654712
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G285600.1

Sequence Viewer

Length: 636 bp
ATGGCCAGAGAAAGTGGCCCAAGGAAATTGGTAAAATCAAGATATGTATATATAAACGCGGAGCTCCCAACTGAAATCATATTCAATCATATACTCCCACGGCTACCACCAGAGGCTCTGATCCGGTGCAAGTACATATGCAAGTCTTGGTCCTCCCTCATCTGCAGCCCTTCCTTTGTCACCGACTTCAACGACAGAAACAAGAGCAACACTAACTTCCTTTTCCAGAAGAATACCCGTTTGTTCTCTTCAAAGATAGAGGAGCAACAAGGAGAGAATAATATTCTGATTCCAACACCCATCGCCCAACTTCCACTCCCGACTCGGAGCAAATTTCTCAAACGTTATCCTGATCTTGTGGAGTATATTCTAAATCCAGAACCTGTCGCCGAACTTTCATACATGAGTCGATGCGAAGCTTTTGAATGTCATCCGAATCATGTGCAGAGTGTCCATGGCTTGGTTTGTGCATCCTCTAGGTGTGGCCCTGTCTTCATACTTAACCCTAGCGCTGAAGAGTCCATCGAACTTCCATATATAAGAGAAAATTACCGCTTGGCATCCGCTACATATAACTTCGGCTTCAGTCCACTGACCAACGAGTATAAGGTTCTCCAGTCCACAATCATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.21

Weight (kDa)

8.44

Isoelectric Point (pI)

61.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 460
AccII CGCG 1 cut(s) 59
AciI CCGC 3 cut(s) 59, 553, 564
AclI AACGTT 1 cut(s) 343
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 2 cut(s) 534, 568
AfaI GTAC 1 cut(s) 134
AfeI AGCGCT 1 cut(s) 511
AfiI CCNNNNNNNGG 1 cut(s) 460
AgsI TTSAA 4 cut(s) 85, 190, 252, 425
AluBI AGCT 2 cut(s) 64, 419
AluI AGCT 2 cut(s) 64, 419
Alw21I GWGCWC 1 cut(s) 66
AlwI GGATC 1 cut(s) 115
AlwNI CAGNNNCTG 1 cut(s) 383
Aor51HI AGCGCT 1 cut(s) 511
AoxI GGCC 3 cut(s) 3, 16, 484
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 3 cut(s) 17, 150, 485
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 484
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 177
BccI CCATC 2 cut(s) 308, 530
BceAI ACGGC 1 cut(s) 116
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BfaI CTAG 2 cut(s) 477, 507
BfmI CTRYAG 1 cut(s) 163
BfoI RGCGCY 1 cut(s) 513
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 3 cut(s) 17, 150, 485
BmsI GCATC 3 cut(s) 401, 479, 569
BpiI GAAGAC 1 cut(s) 484
BpmI CTGGAG 1 cut(s) 599
BsaJI CCNNGG 3 cut(s) 20, 98, 454
BsaWI WCCGGW 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse1I ACTGG 1 cut(s) 616
BseDI CCNNGG 3 cut(s) 20, 98, 454
BseGI GGATG 3 cut(s) 430, 470, 560
BseLI CCNNNNNNNGG 1 cut(s) 460
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 464
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 3 cut(s) 5, 18, 486
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 460
BsnI GGCC 3 cut(s) 5, 18, 486
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 120, 352
Bsp19I CCATGG 1 cut(s) 454
BspACI CCGC 3 cut(s) 59, 553, 564
BspANI GGCC 3 cut(s) 5, 18, 486
BspFNI CGCG 1 cut(s) 59
BspMAI CTGCAG 1 cut(s) 167
BspPI GGATC 1 cut(s) 115
BsrI ACTGG 1 cut(s) 616
BssECI CCNNGG 3 cut(s) 20, 98, 454
BssMI GATC 2 cut(s) 120, 352
BssT1I CCWWGG 2 cut(s) 20, 454
Bst6I CTCTTC 2 cut(s) 253, 510
BstDSI CCRYGG 2 cut(s) 98, 454
BstF5I GGATG 3 cut(s) 430, 470, 560
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 513
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 2 cut(s) 123, 355
BstMBI GATC 2 cut(s) 120, 352
BstSFI CTRYAG 1 cut(s) 163
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 484
BsuRI GGCC 3 cut(s) 5, 18, 486
BtgI CCRYGG 2 cut(s) 98, 454
BtgZI GCGATG 1 cut(s) 286
BtsCI GGATG 3 cut(s) 430, 470, 560
BtsIMutI CAGTG 1 cut(s) 590
CaiI CAGNNNCTG 1 cut(s) 383
CfoI GCGC 1 cut(s) 512
Cfr13I GGNCC 3 cut(s) 17, 150, 485
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 403, 440, 455
CviQI GTAC 1 cut(s) 133
DpnI GATC 2 cut(s) 122, 354
DpnII GATC 2 cut(s) 120, 352
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 253, 510
EarI CTCTTC 2 cut(s) 253, 510
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 2 cut(s) 20, 454
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 511
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 2 cut(s) 534, 568
EcoICRI GAGCTC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 20, 454
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 2 cut(s) 20, 454
FaeI CATG 3 cut(s) 406, 443, 458
FatI CATG 3 cut(s) 402, 439, 454
FauNDI CATATG 1 cut(s) 137
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 3 cut(s) 417, 457, 547
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 2 cut(s) 477, 507
GlaI GCGC 1 cut(s) 511
GluI GCNGC 1 cut(s) 166
GsuI CTGGAG 1 cut(s) 599
HaeII RGCGCY 1 cut(s) 513
HaeIII GGCC 3 cut(s) 5, 18, 486
HapII CCGG 1 cut(s) 124
HhaI GCGC 1 cut(s) 512
Hin1II CATG 3 cut(s) 406, 443, 458
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 5 cut(s) 289, 322, 406, 436, 518
HpaII CCGG 1 cut(s) 124
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 590, 621
Hpy188I TCNGA 4 cut(s) 120, 288, 327, 435
Hpy188III TCNNGA 5 cut(s) 39, 226, 319, 350, 377
Hpy8I GTNNAC 2 cut(s) 590, 621
HpyAV CCTTC 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 5 cut(s) 129, 141, 165, 445, 470
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 3 cut(s) 406, 443, 458
HspAI GCGC 1 cut(s) 510
Kzo9I GATC 2 cut(s) 120, 352
LmnI GCTCC 4 cut(s) 61, 69, 262, 327
LpnPI CCDG 9 cut(s) 19, 123, 137, 239, 363, 390, 396, 501, 629
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 3 cut(s) 401, 479, 569
MaeI CTAG 2 cut(s) 477, 507
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 122, 354
MboI GATC 2 cut(s) 120, 352
MboII GAAGA 4 cut(s) 240, 241, 484, 527
MhlI GDGCHC 1 cut(s) 66
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 26, 332, 547
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 316, 415, 527
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 5 cut(s) 106, 163, 167, 253, 484
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 501
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 59
NcoI CCATGG 1 cut(s) 454
NdeI CATATG 1 cut(s) 137
NdeII GATC 2 cut(s) 120, 352
NlaIII CATG 3 cut(s) 406, 443, 458
NmuCI GTSAC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 289, 436
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 3 cut(s) 316, 414, 526
PpsI GAGTC 3 cut(s) 316, 414, 526
Psp124BI GAGCTC 1 cut(s) 66
Psp1406I AACGTT 1 cut(s) 343
PspPI GGNCC 3 cut(s) 17, 150, 485
PstI CTGCAG 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 383
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 2 cut(s) 120, 352
Sau96I GGNCC 3 cut(s) 17, 150, 485
SchI GAGTC 3 cut(s) 316, 415, 527
SduI GDGCHC 1 cut(s) 66
SetI ASST 6 cut(s) 66, 346, 385, 421, 482, 612
SfaNI GCATC 3 cut(s) 401, 479, 569
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 150
Sse9I AATT 3 cut(s) 26, 332, 547
SsiI CCGC 3 cut(s) 59, 553, 564
SspI AATATT 1 cut(s) 283
SspMI CTAG 2 cut(s) 477, 507
SstI GAGCTC 1 cut(s) 66
StyI CCWWGG 2 cut(s) 20, 454
TaiI ACGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 409, 525
TasI AATT 3 cut(s) 26, 332, 547
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 2 cut(s) 289, 436
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 387, 484
TspRI CASTG 1 cut(s) 597
Van91I CCANNNNNTGG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 332
XspI CTAG 2 cut(s) 477, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.