Rmu_sc0025546.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025546.1
OG0000289
Physical Location & Seq
Forward (+)
232 .. 660
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025546.1_g000001.1.cds

Sequence Viewer

Length: 429 bp
atgcaaggagtacatgcatggaggcatctagagatagaagacaaagacttcgatgatcttgctcttgattgtcaaaatttacagttcaagcggagatctgtgttcctccagggggccagacattggctgcaaacgaatattaaggatcaacttgttatattagtttttgactttgaacaagagcgattcagagtaatcccatttgctcaagaatattatgaagatcctggtggtgcttatcgttttgtggaaatggttgaagtcaatgaatgtgttgcaataaatgatgttgacctctcatatgaaagaaatgttataagtttatggattttgaaggattaccaacatctggtggcggagagtggagaagattgtatgcaccgacagtgcaagtgcactgacggttattttaatctaaaaaaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

142

Amino Acids

16.96

Weight (kDa)

5.06

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AccB7I CCANNNNNTGG 2 cut(s) 123, 349
AciI CCGC 2 cut(s) 91, 356
AclWI GGATC 2 cut(s) 153, 218
AcsI RAATTY 1 cut(s) 76
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 3 cut(s) 112, 123, 349
AgsI TTSAA 4 cut(s) 88, 176, 260, 334
AjnI CCWGG 2 cut(s) 108, 226
Alw21I GWGCWC 1 cut(s) 398
Alw44I GTGCAC 1 cut(s) 394
AlwI GGATC 2 cut(s) 153, 218
AoxI GGCC 1 cut(s) 114
ApaLI GTGCAC 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 76
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspS9I GGNCC 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 114
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 2 cut(s) 110, 228
BfaI CTAG 1 cut(s) 29
BglII AGATCT 1 cut(s) 95
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 2 cut(s) 110, 228
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 2 cut(s) 110, 228
BmsI GCATC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 123, 349
BseBI CCWGG 2 cut(s) 110, 228
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 3 cut(s) 112, 123, 349
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 1 cut(s) 114
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 398
BslI CCNNNNNNNGG 3 cut(s) 112, 123, 349
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 4 cut(s) 55, 95, 145, 223
BspACI CCGC 2 cut(s) 91, 356
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 2 cut(s) 153, 218
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 4 cut(s) 55, 95, 145, 223
Bst2UI CCWGG 2 cut(s) 110, 228
Bst4CI ACNGT 3 cut(s) 84, 387, 404
BstKTI GATC 4 cut(s) 58, 98, 148, 226
BstMBI GATC 4 cut(s) 55, 95, 145, 223
BstNI CCWGG 2 cut(s) 110, 228
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 2 cut(s) 108, 226
BstSLI GKGCMC 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 95, 223
BstYI RGATCY 2 cut(s) 95, 223
BsuRI GGCC 1 cut(s) 116
BtsIMutI CAGTG 2 cut(s) 392, 396
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 11
CviAII CATG 2 cut(s) 14, 18
CviJI RGCY 2 cut(s) 116, 127
CviKI_1 RGCY 2 cut(s) 116, 127
CviQI GTAC 1 cut(s) 11
DpnI GATC 4 cut(s) 57, 97, 147, 225
DpnII GATC 4 cut(s) 55, 95, 145, 223
EciI GGCGGA 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 108, 226
EcoT22I ATGCAT 1 cut(s) 19
FaeI CATG 2 cut(s) 17, 21
FaiI YATR 9 cut(s) 15, 19, 158, 219, 301, 303, 317, 325, 377
FatI CATG 2 cut(s) 13, 17
FauNDI CATATG 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 2 cut(s) 17, 21
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 186
Hpy166II GTNNAC 2 cut(s) 292, 396
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 3 cut(s) 29, 65, 209
Hpy8I GTNNAC 2 cut(s) 292, 396
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 3 cut(s) 84, 387, 404
HpyCH4V TGCA 7 cut(s) 4, 17, 130, 278, 379, 390, 396
Hsp92II CATG 2 cut(s) 17, 21
Kzo9I GATC 4 cut(s) 55, 95, 145, 223
LpnPI CCDG 6 cut(s) 95, 122, 130, 213, 240, 335
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 29
MalI GATC 4 cut(s) 57, 97, 147, 225
MboI GATC 4 cut(s) 55, 95, 145, 223
MboII GAAGA 3 cut(s) 50, 233, 380
MflI RGATCY 2 cut(s) 95, 223
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 1 cut(s) 76
MnlI CCTC 3 cut(s) 15, 116, 305
Mph1103I ATGCAT 1 cut(s) 19
MseI TTAA 2 cut(s) 141, 411
MspR9I CCNGG 2 cut(s) 110, 228
MvaI CCWGG 2 cut(s) 110, 228
NdeI CATATG 1 cut(s) 301
NdeII GATC 4 cut(s) 55, 95, 145, 223
NlaIII CATG 2 cut(s) 17, 21
NlaIV GGNNCC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 1 cut(s) 17
PfeI GAWTC 1 cut(s) 186
PflMI CCANNNNNTGG 2 cut(s) 123, 349
PkrI GCNGC 1 cut(s) 129
PsiI TTATAA 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 108, 226
PspGI CCWGG 2 cut(s) 108, 226
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 2 cut(s) 95, 223
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 141, 411
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 4 cut(s) 55, 95, 145, 223
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 110, 228
SduI GDGCHC 1 cut(s) 398
SetI ASST 1 cut(s) 297
SfaNI GCATC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 1 cut(s) 76
SsiI CCGC 2 cut(s) 91, 356
SspI AATATT 2 cut(s) 139, 215
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 108, 226
TaaI ACNGT 3 cut(s) 84, 387, 404
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 76
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 2 cut(s) 141, 411
Tru9I TTAA 2 cut(s) 141, 411
TscAI CASTG 2 cut(s) 392, 403
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 234, 282, 318
TspRI CASTG 2 cut(s) 392, 403
Van91I CCANNNNNTGG 2 cut(s) 123, 349
VneI GTGCAC 1 cut(s) 394
XapI RAATTY 1 cut(s) 76
XbaI TCTAGA 1 cut(s) 28
XceI RCATGY 1 cut(s) 17
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.