pycom11g10460

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000289
Physical Location & Seq
Reverse (-)
8889532 .. 8890329
798 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g10460.1

Sequence Viewer

Length: 798 bp
ATGTTCAATCCCTCAACACGGGAGTTTATTGTTCTTCCACATGCATTTCCCAGATGCTGCCTTAGTGCCCATTCTACACATCACTTAGGGTTTAGTCCTCTTACAAATGAGTATAAAGTTCTCCAAGTACAAAGGTTTCAACCTCGTGATTCTATGACAAGGGGTATGACTTTTATGTTCAAGATATTCAAATTAGGCACAAGTTTATGGAGGTGCATAGAGTTAGACCTTAATGACCTACCTTTTGATCCTTTCAAGTGCCCGTTTCATAGGAGAAATGTGAGTGTCAATGGCGCCATACATTGGATGCATGACACACAAAATATCTTAGTGGTTTTCGACATTGGAGACGAGAAATTCAGAACAATCCCACTTCCTCGTGATTATAATTGCGCTATACATAAATTTAACTTTGCACATGGGAATATAGTTGAAGTGTTTGGATGTTTGGCGTTAATTGGCGACGAGCAGTTGACACAACAAAACATGATGGGGTTATGGATTTTGAGGGACTACGAAAATCAAGTGTGGGTTAAGGAGACTTTCAGATTTCCCTTTGTTTGGAATGAATTGGGTTACCCCGTCCCTTTCTGTTCCATTCACACAGGTGAGCTCCTCCTCCAATCTTCGAAGTTAAGCAGACAACACCCGAATCATGTGAAACTGCATCTCTACAATATGAAGAGTAAAAGTTTTAGGGAAAGTGAAATTGTTTTGCCCTCCGAATGGGGATTCCAGTATGATACTCGATTGACCTTACTTGCTAGCTTTGAAGATAGCATTGTGCCCTTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

266

Amino Acids

31.14

Weight (kDa)

7.7

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 2 - 237 2.5e-30 F-box associated beta propeller domain
FBA_1 PF07734 3 - 177 3.4e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 303
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 2 cut(s) 356, 404
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 4 cut(s) 18, 303, 561, 726
AflII CTTAAG 1 cut(s) 790
AgsI TTSAA 7 cut(s) 7, 140, 181, 190, 256, 434, 773
AleI CACNNNNGTG 1 cut(s) 606
AluBI AGCT 2 cut(s) 613, 768
AluI AGCT 2 cut(s) 613, 768
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 2 cut(s) 342, 533
AlwI GGATC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 2 cut(s) 356, 404
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspLEI GCGC 2 cut(s) 296, 395
AsuHPI GGTGA 1 cut(s) 620
AsuII TTCGAA 1 cut(s) 629
AsuNHI GCTAGC 1 cut(s) 764
BaeGI GKGCMC 3 cut(s) 70, 263, 789
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 615
BauI CACGAG 2 cut(s) 144, 378
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 484
BcoDI GTCTC 2 cut(s) 342, 533
BfaI CTAG 1 cut(s) 765
BfoI RGCGCY 1 cut(s) 297
BfrI CTTAAG 1 cut(s) 790
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 295
BmsI GCATC 3 cut(s) 44, 297, 676
BmtI GCTAGC 1 cut(s) 768
Bpu14I TTCGAA 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 294
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 303, 561, 726
Bse1I ACTGG 1 cut(s) 736
BseGI GGATG 2 cut(s) 312, 449
BseLI CCNNNNNNNGG 4 cut(s) 18, 303, 561, 726
BseNI ACTGG 1 cut(s) 736
BseRI GAGGAG 2 cut(s) 605, 608
BseSI GKGCMC 3 cut(s) 70, 263, 789
BseXI GCAGC 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 615
BslFI GGGAC 2 cut(s) 524, 569
BslI CCNNNNNNNGG 4 cut(s) 18, 303, 561, 726
BsmAI GTCTC 2 cut(s) 342, 533
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 2 cut(s) 524, 569
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 4 cut(s) 70, 263, 615, 789
Bsp143I GATC 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 295
BspOI GCTAGC 1 cut(s) 768
BspPI GGATC 1 cut(s) 242
BspT104I TTCGAA 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 293
BspTI CTTAAG 1 cut(s) 790
BsrI ACTGG 1 cut(s) 736
BssMI GATC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 294
BssSI CACGAG 2 cut(s) 144, 378
Bst2BI CACGAG 2 cut(s) 144, 378
Bst6I CTCTTC 1 cut(s) 677
BstACI GRCGYC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 790
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 766
BstDEI CTNAG 3 cut(s) 62, 85, 328
BstEII GGTNACC 1 cut(s) 575
BstF5I GGATG 2 cut(s) 312, 449
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 2 cut(s) 296, 395
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 2 cut(s) 342, 533
BstMBI GATC 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 44
BstPI GGTNACC 1 cut(s) 575
BstSLI GKGCMC 3 cut(s) 70, 263, 789
BstV1I GCAGC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 312, 449
Cac8I GCNNGC 1 cut(s) 766
CaiI CAGNNNCTG 1 cut(s) 57
CfoI GCGC 2 cut(s) 296, 395
Csp6I GTAC 1 cut(s) 128
CviAII CATG 5 cut(s) 41, 311, 419, 487, 656
CviJI RGCY 2 cut(s) 613, 768
CviKI_1 RGCY 2 cut(s) 613, 768
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 3 cut(s) 62, 85, 328
DinI GGCGCC 1 cut(s) 295
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
Ecl136II GAGCTC 1 cut(s) 613
Eco24I GRGCYC 1 cut(s) 615
Eco53kI GAGCTC 1 cut(s) 613
Eco91I GGTNACC 1 cut(s) 575
EcoICRI GAGCTC 1 cut(s) 613
EcoO65I GGTNACC 1 cut(s) 575
EcoT22I ATGCAT 2 cut(s) 46, 312
EcoT38I GRGCYC 1 cut(s) 615
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 5 cut(s) 44, 314, 422, 490, 659
FaqI GGGAC 2 cut(s) 524, 569
FatI CATG 5 cut(s) 40, 310, 418, 486, 655
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 2 cut(s) 319, 456
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 1 cut(s) 765
GlaI GCGC 2 cut(s) 295, 394
GluI GCNGC 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 297
HhaI GCGC 2 cut(s) 296, 395
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 5 cut(s) 44, 314, 422, 490, 659
Hin6I GCGC 2 cut(s) 294, 393
HinP1I GCGC 2 cut(s) 294, 393
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 3 cut(s) 149, 652, 732
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 3 cut(s) 362, 548, 724
Hpy188III TCNNGA 3 cut(s) 146, 181, 380
Hpy8I GTNNAC 1 cut(s) 474
Hpy99I CGWCG 1 cut(s) 467
HpyCH4V TGCA 5 cut(s) 44, 216, 310, 416, 667
HpyF3I CTNAG 3 cut(s) 62, 85, 328
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 5 cut(s) 44, 314, 422, 490, 659
HspAI GCGC 2 cut(s) 294, 393
KasI GGCGCC 1 cut(s) 293
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 618
LpnPI CCDG 3 cut(s) 64, 591, 749
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 3 cut(s) 44, 297, 676
MaeI CTAG 1 cut(s) 765
MaeIII GTNAC 1 cut(s) 575
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 4 cut(s) 26, 618, 694, 785
MhlI GDGCHC 4 cut(s) 70, 263, 615, 789
MluCI AATT 7 cut(s) 191, 356, 388, 404, 456, 569, 708
Mly113I GGCGCC 1 cut(s) 294
MnlI CCTC 9 cut(s) 22, 108, 153, 204, 387, 501, 626, 629, 730
Mph1103I ATGCAT 2 cut(s) 46, 312
MseI TTAA 6 cut(s) 231, 408, 455, 534, 635, 791
MslI CAYNNNNRTG 1 cut(s) 606
MspCI CTTAAG 1 cut(s) 790
NarI GGCGCC 1 cut(s) 294
NdeII GATC 1 cut(s) 247
NheI GCTAGC 1 cut(s) 764
NlaIII CATG 5 cut(s) 44, 314, 422, 490, 659
NlaIV GGNNCC 1 cut(s) 295
NsiI ATGCAT 2 cut(s) 46, 312
NspI RCATGY 1 cut(s) 44
NspV TTCGAA 1 cut(s) 629
OliI CACNNNNGTG 1 cut(s) 606
PfeI GAWTC 3 cut(s) 149, 652, 732
PflMI CCANNNNNTGG 1 cut(s) 303
PkrI GCNGC 1 cut(s) 59
PluTI GGCGCC 1 cut(s) 297
PsiI TTATAA 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 615
PspEI GGTNACC 1 cut(s) 575
PspN4I GGNNCC 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 57
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 1 cut(s) 615
SaqAI TTAA 6 cut(s) 231, 408, 455, 534, 635, 791
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 247
SduI GDGCHC 4 cut(s) 70, 263, 615, 789
SfaNI GCATC 3 cut(s) 44, 297, 676
SfoI GGCGCC 1 cut(s) 295
SfuI TTCGAA 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 790
SmoI CTYRAG 1 cut(s) 790
Sse9I AATT 7 cut(s) 191, 356, 388, 404, 456, 569, 708
SspDI GGCGCC 1 cut(s) 293
SspMI CTAG 1 cut(s) 765
SstI GAGCTC 1 cut(s) 615
TaqI TCGA 3 cut(s) 339, 629, 748
TasI AATT 7 cut(s) 191, 356, 388, 404, 456, 569, 708
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 3 cut(s) 149, 652, 732
Tru1I TTAA 6 cut(s) 231, 408, 455, 534, 635, 791
Tru9I TTAA 6 cut(s) 231, 408, 455, 534, 635, 791
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 3 cut(s) 257, 582, 695
Van91I CCANNNNNTGG 1 cut(s) 303
Vha464I CTTAAG 1 cut(s) 790
XapI RAATTY 2 cut(s) 356, 404
XceI RCATGY 1 cut(s) 44
XspI CTAG 1 cut(s) 765
Zsp2I ATGCAT 2 cut(s) 46, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.