FvH4_1g24081

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000289
Physical Location & Seq
Reverse (-)
15938186 .. 15938493
308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24081.t1

Sequence Viewer

Length: 204 bp
ATGAATATAGAATACTACAGCGTCGCAAAGCTTCCGAGCGACATCATACTGTTCGAGATATTCCCAAGATTACCGGCCAAGTCGTTGATGCGGTTTAGGTGCACCTTGGAACTCATCCGAATTAATGCTATCCGCACAGTTGAACCTAGAAGAGATGAGTCTAAGCACCACCTCTACCTTTACAATAAGTACAAGTCGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

68

Amino Acids

8.09

Weight (kDa)

9.66

Isoelectric Point (pI)

65.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 91, 133
AcoI YGGCCR 1 cut(s) 75
AfaI GTAC 1 cut(s) 191
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw21I GWGCWC 1 cut(s) 104
Alw44I GTGCAC 1 cut(s) 100
AoxI GGCC 1 cut(s) 75
ApaLI GTGCAC 1 cut(s) 100
AseI ATTAAT 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 104
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 16
BmsI GCATC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 114
BseSI GKGCMC 1 cut(s) 104
BshFI GGCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 74
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 104
BspACI CCGC 2 cut(s) 91, 133
BspANI GGCC 1 cut(s) 77
BspHI TCATGA 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 51, 139
Bst6I CTCTTC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 114
CciI TCATGA 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 73
CseI GACGC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 201
CviJI RGCY 2 cut(s) 31, 77
CviKI_1 RGCY 2 cut(s) 31, 77
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 204
FaiI YATR 3 cut(s) 8, 47, 202
FatI CATG 1 cut(s) 200
FokI GGATG 1 cut(s) 101
FspBI CTAG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 74
HgaI GACGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 1 cut(s) 158
HpaII CCGG 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 36, 119
Hpy188III TCNNGA 2 cut(s) 55, 201
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 1 cut(s) 26
HpyCH4III ACNGT 2 cut(s) 51, 139
HpyCH4V TGCA 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 162
Hsp92II CATG 1 cut(s) 204
LpnPI CCDG 1 cut(s) 87
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 147
MboII GAAGA 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 120
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 1 cut(s) 182
MseI TTAA 1 cut(s) 123
MspI CCGG 1 cut(s) 74
NlaIII CATG 1 cut(s) 204
PagI TCATGA 1 cut(s) 200
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 123
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 123
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 104
SetI ASST 6 cut(s) 33, 101, 107, 148, 174, 180
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 16
SgeI CNNG 7 cut(s) 48, 67, 78, 86, 91, 118, 159
Sse9I AATT 1 cut(s) 120
SsiI CCGC 2 cut(s) 91, 133
SspMI CTAG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 51, 139
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 120
TatI WGTACW 1 cut(s) 189
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 17
VneI GTGCAC 1 cut(s) 100
VspI ATTAAT 1 cut(s) 123
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.