Rroxscaffold_2G00106130

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000289
Physical Location & Seq
Reverse (-)
29695021 .. 29696217
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106130.1

Sequence Viewer

Length: 1197 bp
ATGCCTATAGAATATTACAACATTGCAAAGCTTCCCATCGACATCATATTGTTTGAGATATTCTCAAGATTACCGGTCAAGTCCTTGATACGGTTTAGGTGCGTATGCAAATCTTGGTCCTCCCTCATCCGCCATCCTTTCTTTGTCAGAACCTACCAAAAGTTGCAGACTCAATCGTGCCATAACCACCACCTCCTTCTCAGATTTTGGAACCCAGTCATGAGTTGGTGGCACTTGCTCTCCGCACAATTCAACCAAGAAGGGAGTATTAGCACCACCGACATCCTTCTAAGCCATGATGGACGGTTAATATGCTCCAATATGGTAAGTATCAATGGCTTAATCTGTGTTTATAGTATAGAGGACCTAGTTGATGATGATAATCGTCTTCATCATCATGCACCTACTGAGCTGGACAACCCCGTTATATTTAACCTCTGCACCCGAGAGTCCATCACTCTTCCCCATGCCTTAAATACTAGCCGGAGCCACTACTTGGTTCATTCGACTTGGATTGGGTTCAGTCCTCAGACAAACGAGAATAAGGTTCTCCAAGTACTAGTGCGGCGCCATCACACCAACGAAAGCAGTTTCATATTCAAGATTTTCACTCTTGGTGGTACAAGTAGTTCATGGAGGCATCTAGAGATAGAAGACAAAGACTTCGATGATCTTGCTCTTGATTATCAAAATTTACTGTTTAAGCCGAGATCTGTGTTCCTCCACGGGGCCAGACATTGGCTGGAAACGAATATTAAGGATGAACTTGTTATATTGGTTTTTGACTTTGAACAAGAGCGATTCAGAGTAATCCCATTGCCTCAAGAATATCATAAAGATCGCGGTGGTGCTACTCCTTTTGTGGAAATGATTGAAGTGAATGAATGTGTTGCAATAAATGATCTCGACTTCTCATCTGAAGGAAATGTTATAAGTTTATGGATTTTGAAGGATTACCAACATCTGGTGTGGGTTAAAGAGAGTATCATCTTTCCCACTAAATGGAGGAAGATGGAATTCCCTTTTCCGAGGTGCTCAATCTACACAGGCGAGCTCCTGCTTAGAGGGCCATGTTGTACGTGCGAGGTGCTTCTTTATAACCTAAACAATAAGCGTTTTACGACGATTCAAGATTCTATGCCACAAATCTTGGGTAGTTATCATGAAAGCATTTTTCCCCTAGCCGCTTCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

398

Amino Acids

46.55

Weight (kDa)

6.28

Isoelectric Point (pI)

56.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 48 1.9e-10 F-box domain
F-box-like PF12937 10 - 48 3.7e-08 F-box-like
FBA_3 PF08268 78 - 376 1.9e-25 F-box associated beta propeller domain
FBA_1 PF07734 142 - 321 9.4e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 932, 1098
AccB1I GGYRCC 1 cut(s) 567
AccB7I CCANNNNNTGG 4 cut(s) 496, 738, 964, 1002
AccII CGCG 1 cut(s) 843
AciI CCGC 5 cut(s) 130, 243, 565, 843, 1185
AcsI RAATTY 2 cut(s) 691, 1016
AcuI CTGAAG 1 cut(s) 939
AcyI GRCGYC 1 cut(s) 568
AfaI GTAC 3 cut(s) 558, 622, 1078
AfiI CCNNNNNNNGG 6 cut(s) 90, 496, 727, 738, 964, 1002
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 6 cut(s) 253, 601, 791, 875, 949, 1130
AhlI ACTAGT 1 cut(s) 559
AluBI AGCT 3 cut(s) 31, 412, 1054
AluI AGCT 3 cut(s) 31, 412, 1054
Alw21I GWGCWC 2 cut(s) 1037, 1056
Ama87I CYCGRG 1 cut(s) 444
AoxI GGCC 2 cut(s) 729, 1067
ApoI RAATTY 2 cut(s) 691, 1016
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
AsiGI ACCGGT 1 cut(s) 73
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 4 cut(s) 117, 364, 729, 1067
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 2 cut(s) 117, 364
BanI GGYRCC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 1056
BbsI GAAGAC 2 cut(s) 380, 660
Bbv12I GWGCWC 2 cut(s) 1037, 1056
BccI CCATC 6 cut(s) 44, 141, 293, 461, 579, 1006
BcgI CGANNNNNNTGC 2 cut(s) 656, 690
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 5 cut(s) 368, 480, 560, 644, 1181
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 571
BglII AGATCT 1 cut(s) 710
BisI GCNGC 2 cut(s) 566, 1185
BlsI GCNGC 2 cut(s) 567, 1186
BmcAI AGTACT 1 cut(s) 558
Bme18I GGWCC 2 cut(s) 117, 364
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 4 cut(s) 117, 364, 729, 1067
BmiI GGNNCC 4 cut(s) 212, 488, 569, 730
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 649
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 2 cut(s) 380, 660
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuEI CTTGAG 2 cut(s) 49, 807
BsaAI YACGTR 1 cut(s) 1080
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 2 cut(s) 724, 1028
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 6 cut(s) 90, 496, 727, 738, 964, 1002
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 2 cut(s) 21, 815
Bse8I GATNNNNATC 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 724, 1028
BseGI GGATG 4 cut(s) 126, 133, 282, 766
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 6 cut(s) 90, 496, 727, 738, 964, 1002
BseMI GCAATG 2 cut(s) 21, 815
BseMII CTCAG 3 cut(s) 214, 399, 542
BseNI ACTGG 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 843
BshFI GGCC 2 cut(s) 731, 1069
BshNI GGYRCC 1 cut(s) 567
BshTI ACCGGT 1 cut(s) 73
BsiHKAI GWGCWC 2 cut(s) 1037, 1056
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 2 cut(s) 74, 484
BslI CCNNNNNNNGG 6 cut(s) 90, 496, 727, 738, 964, 1002
BsnI GGCC 2 cut(s) 731, 1069
BsoBI CYCGRG 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 1037, 1056
Bsp143I GATC 4 cut(s) 670, 710, 838, 901
BspACI CCGC 5 cut(s) 130, 243, 565, 843, 1185
BspANI GGCC 2 cut(s) 731, 1069
BspCNI CTCAG 3 cut(s) 213, 400, 541
BspFNI CGCG 1 cut(s) 843
BspHI TCATGA 2 cut(s) 219, 1162
BspLI GGNNCC 4 cut(s) 212, 488, 569, 730
BspT107I GGYRCC 1 cut(s) 567
BsrDI GCAATG 2 cut(s) 21, 815
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 724, 1028
BssMI GATC 4 cut(s) 670, 710, 838, 901
BssNI GRCGYC 1 cut(s) 568
Bst4CI ACNGT 3 cut(s) 93, 306, 699
Bst6I CTCTTC 1 cut(s) 465
BstACI GRCGYC 1 cut(s) 568
BstBAI YACGTR 1 cut(s) 1080
BstC8I GCNNGC 1 cut(s) 1052
BstDEI CTNAG 5 cut(s) 200, 290, 408, 528, 1061
BstDSI CCRYGG 1 cut(s) 724
BstF5I GGATG 4 cut(s) 126, 133, 282, 766
BstFNI CGCG 1 cut(s) 843
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 4 cut(s) 673, 713, 841, 904
BstMBI GATC 4 cut(s) 670, 710, 838, 901
BstMWI GCNNNNNNNGC 1 cut(s) 1066
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 843
BstV2I GAAGAC 2 cut(s) 380, 660
BstX2I RGATCY 1 cut(s) 710
BstYI RGATCY 1 cut(s) 710
BsuRI GGCC 2 cut(s) 731, 1069
BtgI CCRYGG 1 cut(s) 724
BtsCI GGATG 4 cut(s) 126, 133, 282, 766
Cac8I GCNNGC 1 cut(s) 1052
CciI TCATGA 2 cut(s) 219, 1162
CfoI GCGC 1 cut(s) 570
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 4 cut(s) 117, 364, 729, 1067
Csp6I GTAC 3 cut(s) 557, 621, 1077
CspAI ACCGGT 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 1131, 1166
CviAII CATG 8 cut(s) 220, 296, 398, 467, 633, 1071, 1163, 1194
CviQI GTAC 3 cut(s) 557, 621, 1077
DdeI CTNAG 5 cut(s) 200, 290, 408, 528, 1061
DinI GGCGCC 1 cut(s) 569
DpnI GATC 4 cut(s) 672, 712, 840, 903
DpnII GATC 4 cut(s) 670, 710, 838, 901
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
EciI GGCGGA 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 1054
Eco24I GRGCYC 1 cut(s) 1056
Eco47I GGWCC 2 cut(s) 117, 364
Eco53kI GAGCTC 1 cut(s) 1054
Eco57I CTGAAG 1 cut(s) 939
Eco88I CYCGRG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 1054
EcoO109I RGGNCCY 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 1016
EcoT38I GRGCYC 1 cut(s) 1056
EgeI GGCGCC 1 cut(s) 569
EheI GGCGCC 1 cut(s) 569
FaeI CATG 8 cut(s) 223, 299, 401, 470, 636, 1074, 1166, 1197
FatI CATG 8 cut(s) 219, 295, 397, 466, 632, 1070, 1162, 1193
Fnu4HI GCNGC 2 cut(s) 566, 1185
FokI GGATG 4 cut(s) 113, 120, 269, 773
FriOI GRGCYC 1 cut(s) 1056
Fsp4HI GCNGC 2 cut(s) 566, 1185
FspBI CTAG 5 cut(s) 368, 480, 560, 644, 1181
GlaI GCGC 1 cut(s) 569
GluI GCNGC 2 cut(s) 566, 1185
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 2 cut(s) 731, 1069
HapII CCGG 2 cut(s) 74, 484
HhaI GCGC 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 8 cut(s) 223, 299, 401, 470, 636, 1074, 1166, 1197
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 5 cut(s) 169, 449, 801, 1126, 1133
HpaII CCGG 2 cut(s) 74, 484
Hpy188I TCNGA 6 cut(s) 149, 203, 531, 806, 919, 1029
Hpy188III TCNNGA 9 cut(s) 66, 220, 601, 644, 680, 824, 905, 1130, 1163
Hpy99I CGWCG 1 cut(s) 1126
HpyAV CCTTC 5 cut(s) 206, 254, 296, 914, 943
HpyCH4III ACNGT 3 cut(s) 93, 306, 699
HpyCH4IV ACGT 1 cut(s) 1079
HpyCH4V TGCA 6 cut(s) 26, 108, 166, 401, 441, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 1066
HpyF3I CTNAG 5 cut(s) 200, 290, 408, 528, 1061
HpySE526I ACGT 1 cut(s) 1079
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 8 cut(s) 223, 299, 401, 470, 636, 1074, 1166, 1197
HspAI GCGC 1 cut(s) 568
KasI GGCGCC 1 cut(s) 567
Kzo9I GATC 4 cut(s) 670, 710, 838, 901
LmnI GCTCC 3 cut(s) 320, 486, 1059
LpnPI CCDG 9 cut(s) 87, 228, 398, 497, 728, 745, 950, 1032, 1070
LweI GCATC 1 cut(s) 649
MaeI CTAG 5 cut(s) 368, 480, 560, 644, 1181
MaeII ACGT 1 cut(s) 1079
MalI GATC 4 cut(s) 672, 712, 840, 903
MboI GATC 4 cut(s) 670, 710, 838, 901
MboII GAAGA 4 cut(s) 380, 452, 665, 1021
MflI RGATCY 1 cut(s) 710
MhlI GDGCHC 2 cut(s) 1037, 1056
MluCI AATT 3 cut(s) 248, 691, 1016
Mly113I GGCGCC 1 cut(s) 568
MlyI GAGTC 2 cut(s) 163, 458
MseI TTAA 7 cut(s) 308, 341, 432, 473, 702, 756, 975
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 2 cut(s) 74, 484
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 1 cut(s) 1066
NarI GGCGCC 1 cut(s) 568
NdeII GATC 4 cut(s) 670, 710, 838, 901
NlaIII CATG 8 cut(s) 223, 299, 401, 470, 636, 1074, 1166, 1197
NlaIV GGNNCC 4 cut(s) 212, 488, 569, 730
NmeAIII GCCGAG 1 cut(s) 732
PagI TCATGA 2 cut(s) 219, 1162
PfeI GAWTC 3 cut(s) 801, 1126, 1133
PflMI CCANNNNNTGG 4 cut(s) 496, 738, 964, 1002
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 2 cut(s) 567, 1186
PleI GAGTC 2 cut(s) 163, 457
PluTI GGCGCC 1 cut(s) 571
PpsI GAGTC 2 cut(s) 163, 457
Ppu21I YACGTR 1 cut(s) 1080
PpuMI RGGWCCY 1 cut(s) 364
PsiI TTATAA 2 cut(s) 932, 1098
Psp124BI GAGCTC 1 cut(s) 1056
Psp5II RGGWCCY 1 cut(s) 364
PspN4I GGNNCC 4 cut(s) 212, 488, 569, 730
PspPI GGNCC 4 cut(s) 117, 364, 729, 1067
PspPPI RGGWCCY 1 cut(s) 364
PsrI GAACNNNNNNTAC 2 cut(s) 613, 645
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 3 cut(s) 558, 622, 1078
RsaNI GTAC 3 cut(s) 557, 621, 1077
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 1056
SaqAI TTAA 7 cut(s) 308, 341, 432, 473, 702, 756, 975
SatI GCNGC 2 cut(s) 566, 1185
Sau3AI GATC 4 cut(s) 670, 710, 838, 901
Sau96I GGNCC 4 cut(s) 117, 364, 729, 1067
ScaI AGTACT 1 cut(s) 558
SchI GAGTC 2 cut(s) 163, 458
SduI GDGCHC 2 cut(s) 1037, 1056
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 1 cut(s) 6
SfoI GGCGCC 1 cut(s) 569
SinI GGWCC 2 cut(s) 117, 364
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 64, 822
SmoI CTYRAG 2 cut(s) 64, 822
SpeI ACTAGT 1 cut(s) 559
Sse9I AATT 3 cut(s) 248, 691, 1016
SsiI CCGC 5 cut(s) 130, 243, 565, 843, 1185
SspDI GGCGCC 1 cut(s) 567
SspI AATATT 2 cut(s) 14, 754
SspMI CTAG 5 cut(s) 368, 480, 560, 644, 1181
SstI GAGCTC 1 cut(s) 1056
TaaI ACNGT 3 cut(s) 93, 306, 699
TaiI ACGT 1 cut(s) 1082
TaqI TCGA 4 cut(s) 39, 506, 666, 906
TasI AATT 3 cut(s) 248, 691, 1016
TatI WGTACW 1 cut(s) 556
TauI GCSGC 2 cut(s) 568, 1187
TfiI GAWTC 3 cut(s) 801, 1126, 1133
Tru1I TTAA 7 cut(s) 308, 341, 432, 473, 702, 756, 975
Tru9I TTAA 7 cut(s) 308, 341, 432, 473, 702, 756, 975
TspDTI ATGAA 7 cut(s) 380, 491, 583, 621, 777, 897, 1179
Van91I CCANNNNNTGG 4 cut(s) 496, 738, 964, 1002
VpaK11BI GGWCC 2 cut(s) 117, 364
XapI RAATTY 2 cut(s) 691, 1016
XbaI TCTAGA 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 2 cut(s) 222, 739
XspI CTAG 5 cut(s) 368, 480, 560, 644, 1181
ZrmI AGTACT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.