Rw1G005620

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000289
Physical Location & Seq
Reverse (-)
11233493 .. 11241937
8445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005620.1

Sequence Viewer

Length: 489 bp
ATGGAAGTTGAACCTGATGTTGCAAAGTTCATCCCAAGCGACATCATACTGTCTCATATCCTCCCCAAGCTACCTGACAAGTCCCTGATGAGGTTTAAGTGCGTCTGCAAATCTTGGTCCTCTCTCATCCGCGATCTTTTCTTTCTCAGGGTATATGGGAACTTGCACAACAGCCCCACTACTCACCTCATCGTCGTCTTCTGCTACGTGTCATGCTTGTCGCTGTTTAACAATGTAATCGCCTATGTTGGCTTAATCTGTCTTTTTGATTCCACGTGTGAGGATGACGCTTCCCCAGCTTATGGCTTTAATTCCAACACCCGAGAGTTTATTGCTCTTCCAGACACTGTGCGGGATAAATCAGCCCGTCCAAAGTCTCCAAACTACGAGACAGTCAGTTATGCTTATTGTATCGGGTTCACTCCTCTTGCTAACGAGTATAAGGTTTTCCAAGTGAAACATAGTTTGTTTTTCAATCCGGATCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

162

Amino Acids

18.48

Weight (kDa)

6.87

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 16 - 46 6.1e-06 F-box-like
F-box PF00646 16 - 48 6.4e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 2 cut(s) 130, 352
AcvI CACGTG 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 90, 302
AflIII ACRYGT 2 cut(s) 207, 275
AgsI TTSAA 2 cut(s) 11, 475
AluBI AGCT 2 cut(s) 70, 299
AluI AGCT 2 cut(s) 70, 299
Alw26I GTCTC 3 cut(s) 57, 381, 383
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 321
Aor13HI TCCGGA 1 cut(s) 478
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 1 cut(s) 117
BbrPI CACGTG 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 190
BcoDI GTCTC 3 cut(s) 57, 381, 383
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 190
BsaAI YACGTR 2 cut(s) 208, 276
BsaWI WCCGGW 1 cut(s) 478
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 302
BseAI TCCGGA 1 cut(s) 478
BseGI GGATG 3 cut(s) 30, 126, 289
BseLI CCNNNNNNNGG 2 cut(s) 90, 302
BseMII CTCAG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 414
BseYI CCCAGC 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 90, 302
BsmAI GTCTC 3 cut(s) 57, 381, 383
BsmFI GGGAC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 321
Bsp13I TCCGGA 1 cut(s) 478
Bsp143I GATC 2 cut(s) 133, 481
BspACI CCGC 2 cut(s) 130, 352
BspCNI CTCAG 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 478
BspFNI CGCG 1 cut(s) 132
BspQI GCTCTTC 1 cut(s) 342
BssMI GATC 2 cut(s) 133, 481
Bst4CI ACNGT 3 cut(s) 51, 349, 394
Bst6I CTCTTC 1 cut(s) 342
BstBAI YACGTR 2 cut(s) 208, 276
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 3 cut(s) 30, 126, 289
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 2 cut(s) 136, 484
BstMAI GTCTC 3 cut(s) 57, 381, 383
BstMBI GATC 2 cut(s) 133, 481
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstUI CGCG 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 190
BtsCI GGATG 3 cut(s) 30, 126, 289
BtsIMutI CAGTG 1 cut(s) 345
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 2 cut(s) 91, 296
CviAII CATG 1 cut(s) 213
CviJI RGCY 6 cut(s) 70, 174, 252, 299, 306, 365
CviKI_1 RGCY 6 cut(s) 70, 174, 252, 299, 306, 365
DdeI CTNAG 1 cut(s) 146
DpnI GATC 2 cut(s) 135, 483
DpnII GATC 2 cut(s) 133, 481
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 117
Eco72I CACGTG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 321
FaeI CATG 1 cut(s) 216
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 212
FauI CCCGC 1 cut(s) 345
FokI GGATG 3 cut(s) 17, 113, 296
GsaI CCCAGC 1 cut(s) 299
HapII CCGG 1 cut(s) 479
HgaI GACGC 2 cut(s) 91, 296
Hin1II CATG 1 cut(s) 216
HinfI GANTC 1 cut(s) 269
HpaII CCGG 1 cut(s) 479
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 420
Hpy188III TCNNGA 2 cut(s) 341, 479
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 1 cut(s) 197
HpyCH4III ACNGT 3 cut(s) 51, 349, 394
HpyCH4IV ACGT 2 cut(s) 207, 275
HpyCH4V TGCA 3 cut(s) 23, 108, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 2 cut(s) 207, 275
Hsp92II CATG 1 cut(s) 216
Kpn2I TCCGGA 1 cut(s) 478
Kzo9I GATC 2 cut(s) 133, 481
LguI GCTCTTC 1 cut(s) 342
LpnPI CCDG 6 cut(s) 27, 87, 98, 133, 309, 354
MaeII ACGT 2 cut(s) 207, 275
MalI GATC 2 cut(s) 135, 483
MboI GATC 2 cut(s) 133, 481
MboII GAAGA 2 cut(s) 190, 329
MluCI AATT 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 6 cut(s) 71, 84, 130, 197, 274, 435
MroI TCCGGA 1 cut(s) 478
MseI TTAA 4 cut(s) 96, 228, 254, 309
MspI CCGG 1 cut(s) 479
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 2 cut(s) 133, 481
NlaIII CATG 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 302
PmaCI CACGTG 1 cut(s) 276
PmlI CACGTG 1 cut(s) 276
Ppu21I YACGTR 2 cut(s) 208, 276
PspCI CACGTG 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 295
PspPI GGNCC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 4 cut(s) 96, 228, 254, 309
Sau3AI GATC 2 cut(s) 133, 481
Sau96I GGNCC 1 cut(s) 117
SetI ASST 9 cut(s) 16, 72, 76, 95, 189, 210, 278, 301, 447
SinI GGWCC 1 cut(s) 117
Sse9I AATT 1 cut(s) 310
SsiI CCGC 2 cut(s) 130, 352
TaaI ACNGT 3 cut(s) 51, 349, 394
TaiI ACGT 2 cut(s) 210, 278
TasI AATT 1 cut(s) 310
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 4 cut(s) 96, 228, 254, 309
Tru9I TTAA 4 cut(s) 96, 228, 254, 309
TscAI CASTG 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 1 cut(s) 352
Van91I CCANNNNNTGG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.