Rh5BG104700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000289
Physical Location & Seq
Forward (+)
9641506 .. 9642639
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG104700.1

Sequence Viewer

Length: 1134 bp
ATGCGCTTCAAGTGCGTAAGCAAGACTTGGTCATCTCTCACCCGCAACCTCGACTTGGTTAGAGCCTATAGGAAATTCAACAAGCAAACCCACCTCCTCTTCTTCGTCTGGGATGGAAACAGAAACCAGCAACACCTTTTCTCTGTGCAAACACACCCCACGGGAATTAGTAATCGAACGCCGGCAACCCATCTTTTCTCCATAGAGTTATCCCCAGGTCCATTTCCATTTACAACACATATGAGGGGTGCCAATGGCTTGACCTTTGTTCATAATGCCTATGGCACTTTGACCAGTGAGGAACACGACTCCATTTATGTTCTGAATCCTTGTAGTCGGGAGCTTTTCAATCTTCCTCATGTTACCAATCAAAGAGCCCATCATATATACCACTTTGGATTCTGTACTTCTGCGACAAACGAGTACTACAAGGTTCTCCAAGTCGAAGAGACTCCGAACCAGAAATGCGTGTTCAAGATTTACACACTGGGCTCACATACTTCATGGAGGCACATAGAGGACAATGAGGTCACCGATACTCTCCCTTTCGATTTGAAAAGCCGATCGTTTGCTGACAGTAGTTCTAGCGTGTGCGTCGATGGGGTTATATATTGGACTCAAAGGAGGAGTGCTACTTCAAACCCGGTGCCACATGAAACATCATTGATTAGAATCATGGAGTTTGAAAGAGCAGAAACTGTGATCGTGGCATTTGATGTTGAAGATGAGAAGTTCAGAGTGATTCCTCCGCCTAGGGCTTGCAGTTGCAGTAATGCTGTCATGTTCAACAGAATAGTGGAAGTGTGTGGATGTGTGGCTCTACTATATGTCATTGAGCAACAGCAGCAGATCGAGCTATGGGTTTTGAGGGACTCCCGGAATCACCGGTGGGTGAAGGAGACGATTCGTGCTCCTTTTCCGGTGATGGGACTCGGGCGACGTGCTCTGTACAGGATCCTCACAAGAGGAAAGTTTGTGTTCTTCAGAGGAGATGATAGGGTGTTTTATTATGATATGGAGAGTAGGAGTTTAGACGGCAGTGAAATAATCTGGCCCCAAGGGATGATTCGTGGAATGAGAGAGTGGTTACGGTTGGTGGAGATGTATGATGATACCATTGTCTCATTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

377

Amino Acids

43.98

Weight (kDa)

8.53

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 34 - 345 1.8e-30 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 98 - 299 3.7e-07 KIB1-4 beta-propeller
FBA_1 PF07734 99 - 292 3.5e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 527
AccB1I GGYRCC 2 cut(s) 248, 646
AciI CCGC 2 cut(s) 43, 749
AclWI GGATC 2 cut(s) 949, 962
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 967
AfaI GTAC 3 cut(s) 406, 425, 950
AfiI CCNNNNNNNGG 2 cut(s) 55, 926
AgeI ACCGGT 1 cut(s) 885
AgsI TTSAA 9 cut(s) 10, 79, 349, 475, 556, 639, 686, 722, 787
AjiI CACGTC 1 cut(s) 941
AjnI CCWGG 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 1050, 1082
AluBI AGCT 2 cut(s) 343, 856
AluI AGCT 2 cut(s) 343, 856
Alw21I GWGCWC 2 cut(s) 913, 946
Alw26I GTCTC 3 cut(s) 443, 893, 1126
AlwI GGATC 2 cut(s) 949, 962
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 932
AoxI GGCC 1 cut(s) 1052
ApeKI GCWGC 1 cut(s) 844
ApoI RAATTY 1 cut(s) 74
AsiGI ACCGGT 1 cut(s) 885
AspA2I CCTAGG 1 cut(s) 752
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 218, 1053
AsuC2I CCSGG 2 cut(s) 644, 877
AsuHPI GGTGA 5 cut(s) 31, 523, 875, 904, 934
AvaI CYCGRG 1 cut(s) 932
AvaII GGWCC 1 cut(s) 218
AvrII CCTAGG 1 cut(s) 752
BaeI ACNNNNGTAYC 1 cut(s) 1104
BamHI GGATCC 1 cut(s) 954
BanI GGYRCC 2 cut(s) 248, 646
BanII GRGCYC 2 cut(s) 379, 494
Bbv12I GWGCWC 2 cut(s) 913, 946
BbvI GCAGC 1 cut(s) 856
BccI CCATC 5 cut(s) 107, 198, 387, 593, 919
BceAI ACGGC 1 cut(s) 1051
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 2 cut(s) 644, 877
BcoDI GTCTC 3 cut(s) 443, 893, 1126
BfaI CTAG 2 cut(s) 585, 753
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 1 cut(s) 845
BlnI CCTAGG 1 cut(s) 752
BlsI GCNGC 1 cut(s) 846
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 3 cut(s) 216, 644, 877
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 932
BmgBI CACGTC 1 cut(s) 941
BmgT120I GGNCC 2 cut(s) 218, 1053
BmiI GGNNCC 4 cut(s) 250, 648, 956, 1055
BmrFI CCNGG 3 cut(s) 216, 644, 877
BmrI ACTGGG 1 cut(s) 497
BmuI ACTGGG 1 cut(s) 497
BpuMI CCSGG 2 cut(s) 644, 877
BsaBI GATNNNNATC 1 cut(s) 671
BsaJI CCNNGG 4 cut(s) 159, 214, 752, 1057
BsaWI WCCGGW 2 cut(s) 885, 919
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 926
Bse118I RCCGGY 2 cut(s) 181, 885
Bse1I ACTGG 2 cut(s) 294, 492
Bse8I GATNNNNATC 1 cut(s) 671
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 4 cut(s) 159, 214, 752, 1057
BseGI GGATG 3 cut(s) 118, 815, 1068
BseJI GATNNNNATC 1 cut(s) 671
BseLI CCNNNNNNNGG 2 cut(s) 55, 926
BseNI ACTGG 2 cut(s) 294, 492
BseRI GAGGAG 3 cut(s) 86, 640, 1002
BseXI GCAGC 1 cut(s) 856
Bsh1285I CGRYCG 1 cut(s) 566
BshFI GGCC 1 cut(s) 1054
BshNI GGYRCC 2 cut(s) 248, 646
BshTI ACCGGT 1 cut(s) 885
BsiEI CGRYCG 1 cut(s) 566
BsiHKAI GWGCWC 2 cut(s) 913, 946
BsiHKCI CYCGRG 1 cut(s) 932
BsiSI CCGG 5 cut(s) 182, 644, 877, 886, 920
BslFI GGGAC 2 cut(s) 884, 942
BslI CCNNNNNNNGG 2 cut(s) 55, 926
BsmAI GTCTC 3 cut(s) 443, 893, 1126
BsmBI CGTCTC 1 cut(s) 893
BsmFI GGGAC 2 cut(s) 884, 942
BsnI GGCC 1 cut(s) 1054
BsoBI CYCGRG 1 cut(s) 932
Bsp1286I GDGCHC 4 cut(s) 379, 494, 913, 946
Bsp1407I TGTACA 1 cut(s) 948
Bsp143I GATC 4 cut(s) 563, 702, 849, 954
BspACI CCGC 2 cut(s) 43, 749
BspANI GGCC 1 cut(s) 1054
BspLI GGNNCC 4 cut(s) 250, 648, 956, 1055
BspPI GGATC 2 cut(s) 949, 962
BspT107I GGYRCC 2 cut(s) 248, 646
BsrFI RCCGGY 2 cut(s) 181, 885
BsrGI TGTACA 1 cut(s) 948
BsrI ACTGG 2 cut(s) 294, 492
BssAI RCCGGY 2 cut(s) 181, 885
BssECI CCNNGG 4 cut(s) 159, 214, 752, 1057
BssMI GATC 4 cut(s) 563, 702, 849, 954
BssT1I CCWWGG 2 cut(s) 752, 1057
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 578, 700, 1092
Bst6I CTCTTC 2 cut(s) 104, 441
BstAUI TGTACA 1 cut(s) 948
BstC8I GCNNGC 2 cut(s) 183, 760
BstDSI CCRYGG 1 cut(s) 159
BstEII GGTNACC 1 cut(s) 529
BstF5I GGATG 3 cut(s) 118, 815, 1068
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 4 cut(s) 566, 705, 852, 957
BstMAI GTCTC 3 cut(s) 443, 893, 1126
BstMBI GATC 4 cut(s) 563, 702, 849, 954
BstMCI CGRYCG 1 cut(s) 566
BstMWI GCNNNNNNNGC 3 cut(s) 12, 844, 853
BstNI CCWGG 1 cut(s) 216
BstPI GGTNACC 1 cut(s) 529
BstSCI CCNGG 3 cut(s) 214, 642, 875
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 856
BstX2I RGATCY 1 cut(s) 954
BstYI RGATCY 1 cut(s) 954
BsuRI GGCC 1 cut(s) 1054
BtgI CCRYGG 1 cut(s) 159
BtrI CACGTC 1 cut(s) 941
BtsCI GGATG 3 cut(s) 118, 815, 1068
BtsI GCAGTG 1 cut(s) 1045
BtsIMutI CAGTG 3 cut(s) 301, 485, 1045
Cac8I GCNNGC 2 cut(s) 183, 760
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 2 cut(s) 181, 885
Cfr13I GGNCC 2 cut(s) 218, 1053
CseI GACGC 1 cut(s) 583
Csp6I GTAC 3 cut(s) 405, 424, 949
CspAI ACCGGT 1 cut(s) 885
CviAII CATG 5 cut(s) 359, 504, 653, 676, 781
CviQI GTAC 3 cut(s) 405, 424, 949
DpnI GATC 4 cut(s) 565, 704, 851, 956
DpnII GATC 4 cut(s) 563, 702, 849, 954
DrdI GACNNNNNNGTC 1 cut(s) 527
DseDI GACNNNNNNGTC 1 cut(s) 527
Eam1104I CTCTTC 2 cut(s) 104, 441
EarI CTCTTC 2 cut(s) 104, 441
EciI GGCGGA 1 cut(s) 738
Eco130I CCWWGG 2 cut(s) 752, 1057
Eco24I GRGCYC 2 cut(s) 379, 494
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 967
Eco88I CYCGRG 1 cut(s) 932
Eco91I GGTNACC 1 cut(s) 529
EcoO65I GGTNACC 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 752, 1057
EcoT38I GRGCYC 2 cut(s) 379, 494
ErhI CCWWGG 2 cut(s) 752, 1057
Esp3I CGTCTC 1 cut(s) 893
FaeI CATG 5 cut(s) 362, 507, 656, 679, 784
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 2 cut(s) 884, 942
FatI CATG 5 cut(s) 358, 503, 652, 675, 780
FauI CCCGC 1 cut(s) 50
FauNDI CATATG 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 845
FokI GGATG 3 cut(s) 125, 822, 1075
FriOI GRGCYC 2 cut(s) 379, 494
Fsp4HI GCNGC 1 cut(s) 845
FspBI CTAG 2 cut(s) 585, 753
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 845
HaeIII GGCC 1 cut(s) 1054
HapII CCGG 5 cut(s) 182, 644, 877, 886, 920
HgaI GACGC 1 cut(s) 583
HhaI GCGC 1 cut(s) 6
Hin1II CATG 5 cut(s) 362, 507, 656, 679, 784
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HpaII CCGG 5 cut(s) 182, 644, 877, 886, 920
HphI GGTGA 5 cut(s) 31, 523, 875, 904, 934
Hpy188I TCNGA 4 cut(s) 324, 456, 737, 986
Hpy188III TCNNGA 2 cut(s) 338, 475
Hpy99I CGWCG 2 cut(s) 599, 942
HpyAV CCTTC 1 cut(s) 889
HpyCH4III ACNGT 3 cut(s) 578, 700, 1092
HpyCH4IV ACGT 1 cut(s) 940
HpyCH4V TGCA 3 cut(s) 148, 762, 768
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 844, 853
HpySE526I ACGT 1 cut(s) 940
Hsp92II CATG 5 cut(s) 362, 507, 656, 679, 784
HspAI GCGC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 4 cut(s) 563, 702, 849, 954
LmnI GCTCC 2 cut(s) 340, 916
Lsp1109I GCAGC 1 cut(s) 856
MaeI CTAG 2 cut(s) 585, 753
MaeII ACGT 1 cut(s) 940
MaeIII GTNAC 3 cut(s) 361, 529, 1086
MalI GATC 4 cut(s) 565, 704, 851, 956
MboI GATC 4 cut(s) 563, 702, 849, 954
MboII GAAGA 6 cut(s) 91, 94, 344, 458, 734, 973
MflI RGATCY 1 cut(s) 954
MhlI GDGCHC 4 cut(s) 379, 494, 913, 946
MluCI AATT 2 cut(s) 74, 165
MlyI GAGTC 5 cut(s) 302, 445, 610, 866, 924
MroNI GCCGGC 1 cut(s) 181
MslI CAYNNNNRTG 1 cut(s) 1129
MspI CCGG 5 cut(s) 182, 644, 877, 886, 920
MspR9I CCNGG 3 cut(s) 216, 644, 877
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 12, 844, 853
NaeI GCCGGC 1 cut(s) 183
NciI CCSGG 2 cut(s) 644, 877
NdeI CATATG 1 cut(s) 240
NdeII GATC 4 cut(s) 563, 702, 849, 954
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 5 cut(s) 362, 507, 656, 679, 784
NlaIV GGNNCC 4 cut(s) 250, 648, 956, 1055
NmuCI GTSAC 1 cut(s) 529
PdiI GCCGGC 1 cut(s) 183
PfeI GAWTC 7 cut(s) 325, 399, 672, 742, 880, 904, 1066
PflFI GACNNNGTC 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 875
PinAI ACCGGT 1 cut(s) 885
PkrI GCNGC 1 cut(s) 846
Ple19I CGATCG 1 cut(s) 566
PleI GAGTC 5 cut(s) 302, 445, 610, 866, 924
PpsI GAGTC 5 cut(s) 302, 445, 610, 866, 924
Psp6I CCWGG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 529
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 4 cut(s) 250, 648, 956, 1055
PspPI GGNCC 2 cut(s) 218, 1053
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 954
PsyI GACNNNGTC 1 cut(s) 28
PvuI CGATCG 1 cut(s) 566
RsaI GTAC 3 cut(s) 406, 425, 950
RsaNI GTAC 3 cut(s) 405, 424, 949
RseI CAYNNNNRTG 1 cut(s) 1129
SatI GCNGC 1 cut(s) 845
Sau3AI GATC 4 cut(s) 563, 702, 849, 954
Sau96I GGNCC 2 cut(s) 218, 1053
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 5 cut(s) 302, 445, 610, 866, 924
ScrFI CCNGG 3 cut(s) 216, 644, 877
SduI GDGCHC 4 cut(s) 379, 494, 913, 946
SfcI CTRYAG 1 cut(s) 67
SgrAI CRCCGGYG 1 cut(s) 885
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 1129
Sse9I AATT 2 cut(s) 74, 165
SsiI CCGC 2 cut(s) 43, 749
SspMI CTAG 2 cut(s) 585, 753
StyD4I CCNGG 3 cut(s) 214, 642, 875
StyI CCWWGG 2 cut(s) 752, 1057
TaaI ACNGT 3 cut(s) 578, 700, 1092
TaiI ACGT 1 cut(s) 943
TaqI TCGA 6 cut(s) 51, 175, 444, 549, 597, 852
TasI AATT 2 cut(s) 74, 165
TatI WGTACW 3 cut(s) 404, 423, 948
TfiI GAWTC 7 cut(s) 325, 399, 672, 742, 880, 904, 1066
TscAI CASTG 3 cut(s) 301, 492, 1045
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 1 cut(s) 844
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 3 cut(s) 260, 492, 669
TspRI CASTG 3 cut(s) 301, 492, 1045
Tth111I GACNNNGTC 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 74
XmaJI CCTAGG 1 cut(s) 752
XspI CTAG 2 cut(s) 585, 753
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.