Rh4AG093400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000289
Physical Location & Seq
Forward (+)
19819694 .. 19820720
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG093400.1

Sequence Viewer

Length: 447 bp
ATGGTTACGCTCCCCCAGACTTCACGCGTGAATCTCACAGTCTATGTTGCACACCACTTTGGATTCAGCTCTCTTACAAACGAGCACAAGGTTCTCCAAATCCAAAGATATAAACGGGGTTTAATTTTTAACACTTTTGTCCTTGGTACAAGTACTACATGGAGGCAAGTAGAGGTAGACCTTGCTGATCTCCCTTTTGATCCTCTCGAGTTCAAATTTGATACTAGCAGTGTATCCACCTATGGGGCTATACATTGGCTGCACCCAACATTGAATATTATTGTGGCTTTCGACATGAATGGGGCTGAGAGATTTAAGGTGGTACCAATTCCTGATGGTATTGATCTACATGATCCCCTCGTCAGACTAGATAAAGTGGATGGATGTCTGGCTCTAATAGATGGGCGGAAGCAGCAAAGCTACATGAAGGGACGCCTAGCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

148

Amino Acids

16.79

Weight (kDa)

7.01

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 2 - 135 2.2e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 322
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 27
AciI CCGC 1 cut(s) 406
AclWI GGATC 2 cut(s) 194, 347
AcsI RAATTY 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 433
AfaI GTAC 3 cut(s) 148, 154, 324
AfiI CCNNNNNNNGG 1 cut(s) 243
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 2 cut(s) 214, 274
AluBI AGCT 3 cut(s) 69, 420, 440
AluI AGCT 3 cut(s) 69, 420, 440
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 2 cut(s) 194, 347
Ama87I CYCGRG 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 259, 412
ApoI RAATTY 1 cut(s) 215
Asp718I GGTACC 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 206
BanI GGYRCC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 246, 424
BccI CCATC 3 cut(s) 329, 374, 395
BciVI GTATCC 1 cut(s) 244
BfaI CTAG 3 cut(s) 225, 368, 437
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 2 cut(s) 260, 413
BlsI GCNGC 2 cut(s) 261, 414
BmcAI AGTACT 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 2 cut(s) 385, 389
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 246, 424
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 4 cut(s) 187, 199, 343, 352
BspACI CCGC 1 cut(s) 406
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 2 cut(s) 194, 347
BspT107I GGYRCC 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 4 cut(s) 187, 199, 343, 352
BssNI GRCGYC 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 40
BstACI GRCGYC 1 cut(s) 433
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 385, 389
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 4 cut(s) 190, 202, 346, 355
BstMBI GATC 4 cut(s) 187, 199, 343, 352
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 246, 424
BsuI GTATCC 1 cut(s) 244
BtsCI GGATG 2 cut(s) 385, 389
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
CseI GACGC 1 cut(s) 441
Csp6I GTAC 3 cut(s) 147, 153, 323
CviAII CATG 4 cut(s) 159, 295, 350, 424
CviJI RGCY 8 cut(s) 69, 248, 259, 287, 305, 392, 420, 440
CviKI_1 RGCY 8 cut(s) 69, 248, 259, 287, 305, 392, 420, 440
CviQI GTAC 3 cut(s) 147, 153, 323
DdeI CTNAG 1 cut(s) 306
DpnI GATC 4 cut(s) 189, 201, 345, 354
DpnII GATC 4 cut(s) 187, 199, 343, 352
EciI GGCGGA 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 4 cut(s) 162, 298, 353, 427
FaiI YATR 8 cut(s) 45, 111, 160, 243, 251, 296, 351, 425
FatI CATG 4 cut(s) 158, 294, 349, 423
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 260, 413
FokI GGATG 2 cut(s) 392, 396
Fsp4HI GCNGC 2 cut(s) 260, 413
FspBI CTAG 3 cut(s) 225, 368, 437
GluI GCNGC 2 cut(s) 260, 413
HgaI GACGC 1 cut(s) 441
Hin1I GRCGYC 1 cut(s) 433
Hin1II CATG 4 cut(s) 162, 298, 353, 427
HinfI GANTC 2 cut(s) 31, 63
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 365
Hpy188III TCNNGA 2 cut(s) 206, 332
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 421
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 50, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 433
Hsp92II CATG 4 cut(s) 162, 298, 353, 427
KpnI GGTACC 1 cut(s) 326
Kzo9I GATC 4 cut(s) 187, 199, 343, 352
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 3 cut(s) 29, 345, 374
Lsp1109I GCAGC 2 cut(s) 246, 424
MaeI CTAG 3 cut(s) 225, 368, 437
MaeIII GTNAC 1 cut(s) 4
MalI GATC 4 cut(s) 189, 201, 345, 354
MboI GATC 4 cut(s) 187, 199, 343, 352
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 4 cut(s) 123, 215, 327, 442
MluI ACGCGT 1 cut(s) 25
MnlI CCTC 4 cut(s) 156, 166, 213, 368
MseI TTAA 4 cut(s) 122, 129, 315, 445
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 412
NdeII GATC 4 cut(s) 187, 199, 343, 352
NlaIII CATG 4 cut(s) 162, 298, 353, 427
NlaIV GGNNCC 1 cut(s) 324
PaeR7I CTCGAG 1 cut(s) 206
PfeI GAWTC 2 cut(s) 31, 63
PkrI GCNGC 2 cut(s) 261, 414
PspN4I GGNNCC 1 cut(s) 324
RsaI GTAC 3 cut(s) 148, 154, 324
RsaNI GTAC 3 cut(s) 147, 153, 323
SaqAI TTAA 4 cut(s) 122, 129, 315, 445
SatI GCNGC 2 cut(s) 260, 413
Sau3AI GATC 4 cut(s) 187, 199, 343, 352
ScaI AGTACT 1 cut(s) 154
SduI GDGCHC 1 cut(s) 87
SetI ASST 8 cut(s) 71, 93, 177, 183, 242, 321, 422, 442
Sfr274I CTCGAG 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 4 cut(s) 123, 215, 327, 442
SsiI CCGC 1 cut(s) 406
SspI AATATT 1 cut(s) 277
SspMI CTAG 3 cut(s) 225, 368, 437
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 2 cut(s) 207, 291
TasI AATT 4 cut(s) 123, 215, 327, 442
TatI WGTACW 1 cut(s) 152
TfiI GAWTC 2 cut(s) 31, 63
Tru1I TTAA 4 cut(s) 122, 129, 315, 445
Tru9I TTAA 4 cut(s) 122, 129, 315, 445
TscAI CASTG 1 cut(s) 235
TseI GCWGC 2 cut(s) 259, 412
TspDTI ATGAA 2 cut(s) 311, 440
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 3 cut(s) 225, 368, 437
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.