Rh4AG406800

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
70807288 .. 70807710
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG406800.1

Sequence Viewer

Length: 423 bp
ATGGAAAGAGTTGATGATGATTCAAAGCTGCCAAGCGAAATCATATGCTTGGACATACTCCCAAGGCTACCGCGAGAGTCTTTGATGAAAACTCTCCTCACCGCCAACCCTGTATTTCGGAGCATCCATCTATACTTCCACCCCCACAACAGTACTACTCACCTCCTTCTAGACGCTTACGTCTCATCAGACCCCTTCGTAATCCGAAAGCACTACCTTCTCCTCGTCAAAGCCAGCCAAGAAGGAACTGCTCCATCACATGTCACTGACCTTGTGACACTGCCGGATTCATTCATCACATATGCTAATGGCTTGGTATTAGGCTACTTTGGTCGGAATGATCCCGTTTATATATATTTAATCCCTTCACCCGAGAGTCTATTATTGTTCCCTCTCCTACTCCACCTGTCGACCATTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.84

Weight (kDa)

5.91

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 410
AccII CGCG 1 cut(s) 73
AciI CCGC 2 cut(s) 71, 102
AclWI GGATC 1 cut(s) 335
AfaI GTAC 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 1 cut(s) 24
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 28
AsuHPI GGTGA 3 cut(s) 91, 152, 360
AvaI CYCGRG 1 cut(s) 371
BbvI GCAGC 1 cut(s) 15
BccI CCATC 2 cut(s) 135, 262
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 170
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 371
BmsI GCATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 86, 212
BseXI GCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 371
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 2 cut(s) 71, 102
BspFNI CGCG 1 cut(s) 73
BspPI GGATC 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 235
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 73
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 263
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 123
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 2 cut(s) 264, 278
Cac8I GCNNGC 1 cut(s) 235
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 153
CviAII CATG 1 cut(s) 260
CviJI RGCY 6 cut(s) 28, 67, 233, 237, 312, 324
CviKI_1 RGCY 6 cut(s) 28, 67, 233, 237, 312, 324
CviQI GTAC 1 cut(s) 153
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 1 cut(s) 263
FatI CATG 1 cut(s) 259
FauNDI CATATG 2 cut(s) 44, 301
FblI GTMKAC 1 cut(s) 410
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 29
HapII CCGG 1 cut(s) 284
HgaI GACGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 263
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 4 cut(s) 20, 77, 287, 376
HpaII CCGG 1 cut(s) 284
HphI GGTGA 3 cut(s) 91, 152, 360
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 4 cut(s) 120, 190, 206, 336
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 411
HpyAV CCTTC 5 cut(s) 176, 205, 227, 236, 375
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 1 cut(s) 340
LmnI GCTCC 2 cut(s) 120, 256
LpnPI CCDG 4 cut(s) 123, 247, 297, 419
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 262, 274
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MlyI GAGTC 2 cut(s) 86, 385
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 4 cut(s) 107, 173, 233, 402
MseI TTAA 1 cut(s) 359
MspI CCGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 73
NdeI CATATG 2 cut(s) 44, 301
NdeII GATC 1 cut(s) 340
NlaIII CATG 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 262, 274
NspI RCATGY 1 cut(s) 263
PciI ACATGT 1 cut(s) 259
PfeI GAWTC 2 cut(s) 20, 287
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 2 cut(s) 85, 384
PpsI GAGTC 2 cut(s) 85, 384
PscI ACATGT 1 cut(s) 259
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SalI GTCGAC 1 cut(s) 409
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 2 cut(s) 86, 385
SetI ASST 6 cut(s) 30, 165, 183, 219, 273, 408
SfaNI GCATC 1 cut(s) 132
SsiI CCGC 2 cut(s) 71, 102
SspMI CTAG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 410
TatI WGTACW 1 cut(s) 152
TfiI GAWTC 2 cut(s) 20, 287
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 2 cut(s) 271, 285
TseFI GTSAC 2 cut(s) 262, 274
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 2 cut(s) 262, 274
TspDTI ATGAA 3 cut(s) 101, 279, 283
TspRI CASTG 2 cut(s) 271, 285
XbaI TCTAGA 1 cut(s) 169
XceI RCATGY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 410
XspI CTAG 1 cut(s) 170
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.