FvH4_3g43191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000289
Physical Location & Seq
Reverse (-)
36072057 .. 36072881
825 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43191.t1

Sequence Viewer

Length: 258 bp
ATGTTTAACGAGTTTCTGAGTTTCTCTTTCAGTGGAGACCTTTCTCGACCATTTTTGTGGTTTCTGAGCTTGGGTTTAAGTTTTCACGAATTTCAGGTCTATGATTCTGAAAGTAATGGGGAAGTTTGGTTGAATGAATTAGATCGCAGCAGATCGATTGCAAAGGAGATTCATGGCTTCACATCAGATTTCACTCAGCCTAGGCTCAAGTTCATCCAAGAGTTCTGGCTCCCATTCGTCCCACAGTTCTGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.22

Weight (kDa)

4.74

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 89
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspA2I CCTAGG 1 cut(s) 200
AvrII CCTAGG 1 cut(s) 200
BbvI GCAGC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 148
BlnI CCTAGG 1 cut(s) 200
BlsI GCNGC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 200
BseCI ATCGAT 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 213
BseMII CTCAG 3 cut(s) 8, 56, 209
BseXI GCAGC 1 cut(s) 159
BshVI ATCGAT 1 cut(s) 155
BslFI GGGAC 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 142, 152
BspCNI CTCAG 3 cut(s) 9, 57, 208
BspDI ATCGAT 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 2 cut(s) 142, 152
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 246
BstDEI CTNAG 3 cut(s) 17, 65, 195
BstF5I GGATG 1 cut(s) 213
BstKTI GATC 2 cut(s) 145, 155
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 142, 152
BstV1I GCAGC 1 cut(s) 159
BstXI CCANNNNNNTGG 2 cut(s) 57, 249
Bsu15I ATCGAT 1 cut(s) 155
BsuTUI ATCGAT 1 cut(s) 155
BtsCI GGATG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 155
CviAII CATG 1 cut(s) 173
CviJI RGCY 6 cut(s) 69, 177, 199, 205, 229, 253
CviKI_1 RGCY 6 cut(s) 69, 177, 199, 205, 229, 253
DdeI CTNAG 3 cut(s) 17, 65, 195
DpnI GATC 2 cut(s) 144, 154
DpnII GATC 2 cut(s) 142, 152
Eco130I CCWWGG 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 1 cut(s) 176
FaiI YATR 2 cut(s) 102, 174
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 148
Hin1II CATG 1 cut(s) 176
HinfI GANTC 2 cut(s) 104, 169
Hpy188I TCNGA 4 cut(s) 18, 66, 109, 187
Hpy188III TCNNGA 2 cut(s) 45, 86
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 161
HpyF3I CTNAG 3 cut(s) 17, 65, 195
Hsp92II CATG 1 cut(s) 176
Kzo9I GATC 2 cut(s) 142, 152
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 3 cut(s) 80, 211, 235
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 1 cut(s) 201
MalI GATC 2 cut(s) 144, 154
MboI GATC 2 cut(s) 142, 152
MluCI AATT 2 cut(s) 89, 137
MseI TTAA 2 cut(s) 6, 77
MslI CAYNNNNRTG 1 cut(s) 55
NdeII GATC 2 cut(s) 142, 152
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 230
PfeI GAWTC 2 cut(s) 104, 169
PkrI GCNGC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 55
SaqAI TTAA 2 cut(s) 6, 77
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 2 cut(s) 142, 152
SetI ASST 3 cut(s) 42, 71, 99
SmiMI CAYNNNNRTG 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 89, 137
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 46, 155
TasI AATT 2 cut(s) 89, 137
TfiI GAWTC 2 cut(s) 104, 169
Tru1I TTAA 2 cut(s) 6, 77
Tru9I TTAA 2 cut(s) 6, 77
TscAI CASTG 1 cut(s) 37
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 3 cut(s) 150, 161, 202
TspRI CASTG 1 cut(s) 37
XapI RAATTY 1 cut(s) 89
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.