Rmu_sc0001779.1_g000020

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001779.1
OG0000289
Physical Location & Seq
Forward (+)
120180 .. 124497
4318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001779.1_g000020.1.cds

Sequence Viewer

Length: 1065 bp
atgtctaaatcgcaacagggatctagccctttcgtggctcactatgcaccagtgctaagtccatctttctccttcgaaggttctgtgaagaccgtatggaatgcatttgggacattgagaaagtccgtcggggaagctacaaagaagtctgtggatatctccggaaacacgtgccaagaatactcttctctgtactcagctagaccaaccatggaagttgaacctgatgttgcaaagttcatcccaagcgacatcatactgtctcatatcctccccaagctacctgacaagtccctgatgaggtttaagtgcgtctgcaaatcttggtcctctctcatccgcgatcttttctttctccgggtatatgggaacttacataacagccccactacttacctcatcgtcttcttctggcaacacgagatcgaacccaaaagaccaaatcgctttctctctatgcaaatcagccaggaagggatttgtcctacacctcccatcgaccagctgcttgtaactctaagcagcaatccacatttgtcatccttttcacgggagcatgtatgccatgccatcgtcgatgctggcttaatctgtctttttgattccacgtgtgaggatgacgcttccccagcttatgtctttaattccaacacccgagagtttattgctcttccagacactgtgcgggataaatcagcccgtccaaagtctccaaactatgagacagttagttatgcttattgtagcgggttcacacctcttgctaacgagtataaggttctccaagtgaaacatcgtttgtttttcaatccggatcggcaaaacagtatcatgttcaagattttcattctgggtacaagtactgcatcatggagggatgtagaagtagagatggacgtccttgattacttagctctatttgatgcgatagttgaagcgaatggatgggtggctgtatatattgctccggagttgttgaatgcaagggtcatggacttgtggattttgaaggattaccaaaatcaggtgtgggttaaggagagcatcatctttcccgaaccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

354

Amino Acids

40.17

Weight (kDa)

5.93

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 900
AccII CGCG 1 cut(s) 342
AccIII TCCGGA 3 cut(s) 161, 811, 967
AciI CCGC 3 cut(s) 340, 685, 747
AclWI GGATC 2 cut(s) 28, 822
AcvI CACGTG 2 cut(s) 171, 609
AcyI GRCGYC 1 cut(s) 897
AfaI GTAC 3 cut(s) 194, 856, 862
AfiI CCNNNNNNNGG 4 cut(s) 34, 300, 549, 1024
AflIII ACRYGT 2 cut(s) 168, 608
AgsI TTSAA 6 cut(s) 221, 808, 838, 935, 979, 1009
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 6 cut(s) 137, 200, 280, 505, 632, 914
AluI AGCT 6 cut(s) 137, 200, 280, 505, 632, 914
Alw26I GTCTC 3 cut(s) 267, 714, 716
AlwI GGATC 2 cut(s) 28, 822
AlwNI CAGNNNCTG 1 cut(s) 680
Ama87I CYCGRG 1 cut(s) 654
Aor13HI TCCGGA 3 cut(s) 161, 811, 967
ApeKI GCWGC 2 cut(s) 505, 522
AspS9I GGNCC 1 cut(s) 327
AsuC2I CCSGG 1 cut(s) 359
AsuII TTCGAA 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 654
AvaII GGWCC 1 cut(s) 327
BauI CACGAG 1 cut(s) 419
BbrPI CACGTG 2 cut(s) 171, 609
BbsI GAAGAC 2 cut(s) 95, 397
BbvI GCAGC 2 cut(s) 492, 534
BccI CCATC 5 cut(s) 70, 503, 578, 886, 939
BciT130I CCWGG 1 cut(s) 470
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 3 cut(s) 267, 714, 716
BfaI CTAG 2 cut(s) 24, 201
BisI GCNGC 2 cut(s) 506, 523
BlsI GCNGC 2 cut(s) 507, 524
BmcAI AGTACT 1 cut(s) 862
Bme1390I CCNGG 2 cut(s) 359, 470
Bme18I GGWCC 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 654
BmgT120I GGNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 359, 470
BmsI GCATC 4 cut(s) 568, 875, 913, 1053
BpiI GAAGAC 2 cut(s) 95, 397
Bpu14I TTCGAA 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 359
BsaAI YACGTR 2 cut(s) 171, 609
BsaHI GRCGYC 1 cut(s) 897
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 3 cut(s) 161, 811, 967
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 300, 549, 1024
Bse1I ACTGG 1 cut(s) 50
BseAI TCCGGA 3 cut(s) 161, 811, 967
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 6 cut(s) 240, 336, 539, 622, 883, 950
BseLI CCNNNNNNNGG 4 cut(s) 34, 300, 549, 1024
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 2 cut(s) 492, 534
BseYI CCCAGC 1 cut(s) 628
Bsh1236I CGCG 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 654
BsiSI CCGG 4 cut(s) 162, 358, 812, 968
BslFI GGGAC 2 cut(s) 124, 277
BslI CCNNNNNNNGG 4 cut(s) 34, 300, 549, 1024
BsmAI GTCTC 3 cut(s) 267, 714, 716
BsmFI GGGAC 2 cut(s) 124, 277
BsmI GAATGC 2 cut(s) 106, 985
BsoBI CYCGRG 1 cut(s) 654
Bsp119I TTCGAA 1 cut(s) 75
Bsp13I TCCGGA 3 cut(s) 161, 811, 967
Bsp143I GATC 4 cut(s) 20, 343, 423, 814
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 3 cut(s) 340, 685, 747
BspCNI CTCAG 1 cut(s) 209
BspEI TCCGGA 3 cut(s) 161, 811, 967
BspFNI CGCG 1 cut(s) 342
BspPI GGATC 2 cut(s) 28, 822
BspQI GCTCTTC 1 cut(s) 675
BspT104I TTCGAA 1 cut(s) 75
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 4 cut(s) 20, 343, 423, 814
BssNI GRCGYC 1 cut(s) 897
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 5 cut(s) 94, 261, 682, 727, 827
Bst6I CTCTTC 2 cut(s) 190, 675
BstACI GRCGYC 1 cut(s) 897
BstBAI YACGTR 2 cut(s) 171, 609
BstBI TTCGAA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 4 cut(s) 56, 196, 518, 910
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 6 cut(s) 240, 336, 539, 622, 883, 950
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 4 cut(s) 23, 346, 426, 817
BstMAI GTCTC 3 cut(s) 267, 714, 716
BstMBI GATC 4 cut(s) 20, 343, 423, 814
BstMWI GCNNNNNNNGC 2 cut(s) 44, 629
BstNI CCWGG 1 cut(s) 470
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 2 cut(s) 357, 468
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 492, 534
BstV2I GAAGAC 2 cut(s) 95, 397
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 6 cut(s) 240, 336, 539, 622, 883, 950
BtsIMutI CAGTG 2 cut(s) 57, 678
Cac8I GCNNGC 1 cut(s) 583
CaiI CAGNNNCTG 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 327
CseI GACGC 2 cut(s) 301, 629
Csp6I GTAC 3 cut(s) 193, 855, 861
CviAII CATG 7 cut(s) 211, 557, 566, 832, 870, 991, 1062
CviQI GTAC 3 cut(s) 193, 855, 861
DdeI CTNAG 4 cut(s) 56, 196, 518, 910
DpnI GATC 4 cut(s) 22, 345, 425, 816
DpnII GATC 4 cut(s) 20, 343, 423, 814
Eam1104I CTCTTC 2 cut(s) 190, 675
EarI CTCTTC 2 cut(s) 190, 675
Eco130I CCWWGG 1 cut(s) 210
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 327
Eco72I CACGTG 2 cut(s) 171, 609
Eco88I CYCGRG 1 cut(s) 654
EcoRII CCWGG 1 cut(s) 468
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 7 cut(s) 214, 560, 569, 835, 873, 994, 1065
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 2 cut(s) 124, 277
FatI CATG 7 cut(s) 210, 556, 565, 831, 869, 990, 1061
FauI CCCGC 2 cut(s) 678, 740
Fnu4HI GCNGC 2 cut(s) 506, 523
FokI GGATG 6 cut(s) 227, 323, 526, 629, 890, 957
Fsp4HI GCNGC 2 cut(s) 506, 523
FspBI CTAG 2 cut(s) 24, 201
GluI GCNGC 2 cut(s) 506, 523
GsaI CCCAGC 1 cut(s) 632
HapII CCGG 4 cut(s) 162, 358, 812, 968
HgaI GACGC 2 cut(s) 301, 629
Hin1I GRCGYC 1 cut(s) 897
Hin1II CATG 7 cut(s) 214, 560, 569, 835, 873, 994, 1065
HinfI GANTC 1 cut(s) 602
HpaII CCGG 4 cut(s) 162, 358, 812, 968
Hpy166II GTNNAC 1 cut(s) 753
Hpy188III TCNNGA 6 cut(s) 162, 674, 812, 838, 968, 1055
Hpy8I GTNNAC 1 cut(s) 753
Hpy99I CGWCG 2 cut(s) 131, 578
HpyAV CCTTC 4 cut(s) 71, 82, 467, 1003
HpyCH4III ACNGT 5 cut(s) 94, 261, 682, 727, 827
HpyCH4IV ACGT 3 cut(s) 170, 608, 897
HpyCH4V TGCA 7 cut(s) 47, 104, 233, 318, 460, 866, 983
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 629
HpyF3I CTNAG 4 cut(s) 56, 196, 518, 910
HpySE526I ACGT 3 cut(s) 170, 608, 897
Hsp92I GRCGYC 1 cut(s) 897
Hsp92II CATG 7 cut(s) 214, 560, 569, 835, 873, 994, 1065
Kpn2I TCCGGA 3 cut(s) 161, 811, 967
Kzo9I GATC 4 cut(s) 20, 343, 423, 814
LguI GCTCTTC 1 cut(s) 675
LmnI GCTCC 2 cut(s) 553, 970
Lsp1109I GCAGC 2 cut(s) 492, 534
LweI GCATC 4 cut(s) 568, 875, 913, 1053
MaeI CTAG 2 cut(s) 24, 201
MaeII ACGT 3 cut(s) 170, 608, 897
MaeIII GTNAC 1 cut(s) 511
MalI GATC 4 cut(s) 22, 345, 425, 816
MboI GATC 4 cut(s) 20, 343, 423, 814
MboII GAAGA 5 cut(s) 100, 177, 397, 400, 662
MflI RGATCY 1 cut(s) 20
MluCI AATT 1 cut(s) 643
MmeI TCCRAC 1 cut(s) 672
MnlI CCTC 8 cut(s) 281, 294, 340, 407, 501, 607, 768, 867
Mph1103I ATGCAT 1 cut(s) 106
MroI TCCGGA 3 cut(s) 161, 811, 967
MseI TTAA 4 cut(s) 306, 587, 642, 1035
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 4 cut(s) 162, 358, 812, 968
MspR9I CCNGG 2 cut(s) 359, 470
Mva1269I GAATGC 2 cut(s) 106, 985
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 44, 629
NciI CCSGG 1 cut(s) 359
NcoI CCATGG 1 cut(s) 210
NdeII GATC 4 cut(s) 20, 343, 423, 814
NlaIII CATG 7 cut(s) 214, 560, 569, 835, 873, 994, 1065
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 560
NspV TTCGAA 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 675
PctI GAATGC 2 cut(s) 106, 985
PfeI GAWTC 1 cut(s) 602
PkrI GCNGC 2 cut(s) 507, 524
PmaCI CACGTG 2 cut(s) 171, 609
PmlI CACGTG 2 cut(s) 171, 609
Ppu21I YACGTR 2 cut(s) 171, 609
Psp6I CCWGG 1 cut(s) 468
PspCI CACGTG 2 cut(s) 171, 609
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 468
PspPI GGNCC 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 505
RsaI GTAC 3 cut(s) 194, 856, 862
RsaNI GTAC 3 cut(s) 193, 855, 861
SapI GCTCTTC 1 cut(s) 675
SaqAI TTAA 4 cut(s) 306, 587, 642, 1035
SatI GCNGC 2 cut(s) 506, 523
Sau3AI GATC 4 cut(s) 20, 343, 423, 814
Sau96I GGNCC 1 cut(s) 327
ScaI AGTACT 1 cut(s) 862
ScrFI CCNGG 2 cut(s) 359, 470
SfaNI GCATC 4 cut(s) 568, 875, 913, 1053
SfuI TTCGAA 1 cut(s) 75
SinI GGWCC 1 cut(s) 327
Sse9I AATT 1 cut(s) 643
SsiI CCGC 3 cut(s) 340, 685, 747
SspMI CTAG 2 cut(s) 24, 201
StyD4I CCNGG 2 cut(s) 357, 468
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 5 cut(s) 94, 261, 682, 727, 827
TaiI ACGT 3 cut(s) 173, 611, 900
TaqI TCGA 4 cut(s) 75, 426, 498, 576
TasI AATT 1 cut(s) 643
TatI WGTACW 2 cut(s) 192, 860
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 4 cut(s) 306, 587, 642, 1035
Tru9I TTAA 4 cut(s) 306, 587, 642, 1035
TscAI CASTG 2 cut(s) 57, 685
TseI GCWGC 2 cut(s) 505, 522
TspDTI ATGAA 2 cut(s) 229, 835
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 2 cut(s) 57, 685
VpaK11BI GGWCC 1 cut(s) 327
XceI RCATGY 1 cut(s) 560
XspI CTAG 2 cut(s) 24, 201
ZraI GACGTC 1 cut(s) 898
ZrmI AGTACT 1 cut(s) 862
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.