RLG00000006511

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000289
Physical Location & Seq
Reverse (-)
7924718 .. 7925847
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006511

Sequence Viewer

Length: 666 bp
ATGGAAGCTAACTCAGTGATCAGCGGAGAGCTCCCACCTGAAATCATATGCTTCCAGATACTCCCAAGGCTACCGACCAAGTTCGTGATCCGTTGCAGATGCGTCTGCAAATCATGGTCCTCTCTCACCAGCAACCCTTCTTTTCTCACCGTCCACCGTAGCTTCCGGTGCAGCCCTTCCACTCACCTCCTCTTCACCACTGCTGTTACAAACGAGTATAAGGTTTTCCAAGTGCATTGGTCTGGTAATGAGGATTACCCGAATTATGTGACTTCTCTGAGGTTCAAAATTTTCACTCTGGGGACAACTACATGGAGGCACATAGAGTTGGACTTTCCTTTTGATCCTGAAAGGCTAGACTTTGCTAAGAAAAGTGTATGCCTCCATGGAGGCATACATTGGATGCATATGAATCAGAAGATTATAGTTGCATTTGATGTTGGAGCCGAGAGATTCAGAGCCAACATCCCACTTCCCGGAGATTGTGACTCGGGAATATTGTTGAAGTGGGTGGATGTGAGCTCCTGCTCAAGCCGGCCTACCTTACGGGACTCGGCCAATGTCAGTGTGCATCTTTACAATATAGAGAGCGATAGCTTTCGGAAATGTAAGATTAGTTTGCCGGTGAAGATTGGTCTATGGAGCTTGCTTACTAGTTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

222

Amino Acids

25.24

Weight (kDa)

8.58

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 10 - 47 3.5e-07 F-box-like
FBA_3 PF08268 68 - 164 4.5e-09 F-box associated beta propeller domain
FBA_1 PF07734 71 - 164 1.5e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AclWI GGATC 2 cut(s) 82, 338
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 286, 505
AhlI ACTAGT 1 cut(s) 653
AluBI AGCT 6 cut(s) 8, 31, 162, 522, 597, 645
AluI AGCT 6 cut(s) 8, 31, 162, 522, 597, 645
Alw21I GWGCWC 2 cut(s) 33, 524
AlwI GGATC 2 cut(s) 82, 338
Ama87I CYCGRG 1 cut(s) 490
AoxI GGCC 2 cut(s) 536, 555
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 288
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 5 cut(s) 118, 139, 176, 187, 637
AvaI CYCGRG 1 cut(s) 490
AvaII GGWCC 1 cut(s) 117
BanII GRGCYC 2 cut(s) 33, 524
Bbv12I GWGCWC 2 cut(s) 33, 524
BbvI GCAGC 1 cut(s) 183
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 1 cut(s) 477
BcuI ACTAGT 1 cut(s) 653
BfaI CTAG 2 cut(s) 356, 654
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 89, 393, 580
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 65, 385
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse118I RCCGGY 2 cut(s) 534, 622
BseDI CCNNGG 2 cut(s) 65, 385
BseGI GGATG 3 cut(s) 408, 465, 520
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMII CTCAG 2 cut(s) 27, 269
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 190
BshFI GGCC 2 cut(s) 538, 557
BsiHKAI GWGCWC 2 cut(s) 33, 524
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 4 cut(s) 166, 477, 535, 623
BslFI GGGAC 2 cut(s) 316, 563
BslI CCNNNNNNNGG 1 cut(s) 476
BsmFI GGGAC 2 cut(s) 316, 563
BsnI GGCC 2 cut(s) 538, 557
BsoBI CYCGRG 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 33, 524
Bsp143I GATC 3 cut(s) 18, 87, 343
Bsp19I CCATGG 1 cut(s) 385
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 538, 557
BspCNI CTCAG 2 cut(s) 26, 270
BspLI GGNNCC 1 cut(s) 445
BspPI GGATC 2 cut(s) 82, 338
BsrFI RCCGGY 2 cut(s) 534, 622
BssAI RCCGGY 2 cut(s) 534, 622
BssECI CCNNGG 2 cut(s) 65, 385
BssMI GATC 3 cut(s) 18, 87, 343
BssT1I CCWWGG 2 cut(s) 65, 385
Bst4CI ACNGT 2 cut(s) 151, 158
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 536, 647
BstDEI CTNAG 3 cut(s) 13, 278, 366
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 3 cut(s) 408, 465, 520
BstKTI GATC 3 cut(s) 21, 90, 346
BstMBI GATC 3 cut(s) 18, 87, 343
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 475
BstV1I GCAGC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 538, 557
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 3 cut(s) 408, 465, 520
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 21, 198, 571
Cac8I GCNNGC 2 cut(s) 536, 647
Cfr10I RCCGGY 2 cut(s) 534, 622
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 91
CviAII CATG 3 cut(s) 114, 312, 386
DdeI CTNAG 3 cut(s) 13, 278, 366
DpnI GATC 3 cut(s) 20, 89, 345
DpnII GATC 3 cut(s) 18, 87, 343
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Ecl136II GAGCTC 2 cut(s) 31, 522
Eco130I CCWWGG 2 cut(s) 65, 385
Eco24I GRGCYC 2 cut(s) 33, 524
Eco47I GGWCC 1 cut(s) 117
Eco53kI GAGCTC 2 cut(s) 31, 522
Eco88I CYCGRG 1 cut(s) 490
EcoICRI GAGCTC 2 cut(s) 31, 522
EcoT14I CCWWGG 2 cut(s) 65, 385
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 33, 524
ErhI CCWWGG 2 cut(s) 65, 385
FaeI CATG 3 cut(s) 117, 315, 389
FaqI GGGAC 2 cut(s) 316, 563
FatI CATG 3 cut(s) 113, 311, 385
FauNDI CATATG 2 cut(s) 47, 408
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 172
FokI GGATG 3 cut(s) 415, 452, 527
FriOI GRGCYC 2 cut(s) 33, 524
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 2 cut(s) 356, 654
GluI GCNGC 1 cut(s) 172
HaeIII GGCC 2 cut(s) 538, 557
HapII CCGG 4 cut(s) 166, 477, 535, 623
HgaI GACGC 1 cut(s) 91
Hin1II CATG 3 cut(s) 117, 315, 389
HinfI GANTC 4 cut(s) 412, 453, 488, 551
HpaII CCGG 4 cut(s) 166, 477, 535, 623
HphI GGTGA 5 cut(s) 118, 139, 176, 187, 637
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 4 cut(s) 279, 417, 458, 603
Hpy188III TCNNGA 4 cut(s) 55, 85, 347, 492
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 147, 186
HpyCH4III ACNGT 2 cut(s) 151, 158
HpyCH4V TGCA 7 cut(s) 96, 108, 171, 235, 406, 431, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 3 cut(s) 13, 278, 366
Hsp92II CATG 3 cut(s) 117, 315, 389
KroI GCCGGC 1 cut(s) 534
KroNI GCCGGC 1 cut(s) 536
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 87, 343
LmnI GCTCC 4 cut(s) 36, 443, 527, 642
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 3 cut(s) 89, 393, 580
MaeI CTAG 2 cut(s) 356, 654
MaeIII GTNAC 3 cut(s) 205, 268, 485
MalI GATC 3 cut(s) 20, 89, 345
MboI GATC 3 cut(s) 18, 87, 343
MboII GAAGA 3 cut(s) 184, 430, 640
MhlI GDGCHC 2 cut(s) 33, 524
MluCI AATT 2 cut(s) 262, 288
MlyI GAGTC 2 cut(s) 482, 545
MmeI TCCRAC 2 cut(s) 309, 421
MnlI CCTC 8 cut(s) 130, 197, 200, 244, 273, 309, 383, 392
Mph1103I ATGCAT 1 cut(s) 408
MroNI GCCGGC 1 cut(s) 534
MseI TTAA 1 cut(s) 664
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 4 cut(s) 166, 477, 535, 623
MspR9I CCNGG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 168
NaeI GCCGGC 1 cut(s) 536
NciI CCSGG 1 cut(s) 477
NcoI CCATGG 1 cut(s) 385
NdeI CATATG 2 cut(s) 47, 408
NdeII GATC 3 cut(s) 18, 87, 343
NgoMIV GCCGGC 1 cut(s) 534
NlaIII CATG 3 cut(s) 117, 315, 389
NlaIV GGNNCC 1 cut(s) 445
NmeAIII GCCGAG 2 cut(s) 472, 533
NmuCI GTSAC 2 cut(s) 268, 485
NsiI ATGCAT 1 cut(s) 408
PdiI GCCGGC 1 cut(s) 536
PfeI GAWTC 2 cut(s) 412, 453
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 2 cut(s) 482, 545
PpsI GAGTC 2 cut(s) 482, 545
Psp124BI GAGCTC 2 cut(s) 33, 524
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 1 cut(s) 117
SacI GAGCTC 2 cut(s) 33, 524
SaqAI TTAA 1 cut(s) 664
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 3 cut(s) 18, 87, 343
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 2 cut(s) 482, 545
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 2 cut(s) 33, 524
SfaNI GCATC 3 cut(s) 89, 393, 580
SinI GGWCC 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
SpeI ACTAGT 1 cut(s) 653
Sse9I AATT 2 cut(s) 262, 288
SsiI CCGC 1 cut(s) 24
SspI AATATT 1 cut(s) 498
SspMI CTAG 2 cut(s) 356, 654
SstI GAGCTC 2 cut(s) 33, 524
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 2 cut(s) 65, 385
TaaI ACNGT 2 cut(s) 151, 158
TasI AATT 2 cut(s) 262, 288
TfiI GAWTC 2 cut(s) 412, 453
Tru1I TTAA 1 cut(s) 664
Tru9I TTAA 1 cut(s) 664
TscAI CASTG 3 cut(s) 21, 205, 571
TseFI GTSAC 2 cut(s) 268, 485
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 2 cut(s) 268, 485
TspDTI ATGAA 1 cut(s) 425
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 3 cut(s) 21, 205, 571
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 288
XspI CTAG 2 cut(s) 356, 654
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.