Rw4G034940

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000289
Physical Location & Seq
Forward (+)
61856146 .. 61857259
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G034940.1

Sequence Viewer

Length: 1068 bp
ATGCTTGGACAGTTGGACATACTCCCAAGGCTACCGCGAGAGTCTTTGATGCTCTTTCGGTGCGTTTGCAAGTCATGGAAAACTCTCCTCACCGCCAACCCTGTATTTCGGAGCATCCATCTAAACTTCCACCCTCACAACAGTACTACTCACCTCCTTCTAGACGCTTACGGCTCATCAGACCCCTTCGAACTGCTCCATCACATGCATGTCACTGACCTTGTGACACTGCCGGATTCATTCATCAACGTGCGATATGCTAATGGCTTGGTATTAGGTTACTTTGGTCGGAATGATCCCGTTTATATATTTAATCCCTTCACCCGAGAGTCTATTATTGTTCCCTCTCCTACTCCACCTGTCGACCATTATTTAGACCTGTATTTCGGGTTCAGTCCTAGTACAAACAAGTATAAGGTTGTCCTGATGGCAACCCAAAAGATTTATATTGAAGGTTTAGTAGAGTTTAAGATTTTCACACTGGGTAAAGGTTCGTGGAGTGACATTGTCGTAGACTGGGATCAGCTGTCATTCGTTCCTCTTGGACCTTGGAACTTCTCCGATACTCAAAATGTATGTGTCCATGGGGCCATACACTGGTTCGCTAGTCGTTATGAGGCTATATTAGCTCTTGACATTGGAGAGGAGAGGTTCAAAATCGTACGAGTGCCTAGTGAAGTTGAAGAAGTATGGAGAATTATTGAAGTGGATGGATGTCTATGTATAGTATCATCAAGACGTTTCTGGAACATGGATGTGATGTTGTGGATTTTGAAGGACTACGAACATCAAGTGTGGGTTAAGGTGCCCGTCGCCCGTAGCCCTCCGGAATATCCTGCTTCTGACTTGCCTCTGGAATACCGTGCTTCTGACTTGCCTCTATGTACCATCCACACAGGTGAGCTCTTATTTGATGTTCGTCAAGACAAGTATCTCCAATTATATGACATGAAAAGTAAAAAGTATCGGAGGAGTGAAATCATTTTTCCCAAAATGTTGTGTGATCCTGTATTCAGATCGAATTATATCTCTACTCGTTTTGATGATTGTATTATTCCCTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

355

Amino Acids

41.32

Weight (kDa)

6.18

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 76 - 327 5.9e-27 F-box associated beta propeller domain
FBA_1 PF07734 80 - 271 2.3e-12 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 98 - 257 2.5e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 805
AccB7I CCANNNNNTGG 1 cut(s) 597
AccI GTMKAC 2 cut(s) 363, 513
AccII CGCG 1 cut(s) 37
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 2 cut(s) 35, 93
AclWI GGATC 3 cut(s) 290, 528, 998
AfaI GTAC 4 cut(s) 145, 403, 663, 886
AfiI CCNNNNNNNGG 1 cut(s) 597
AgsI TTSAA 5 cut(s) 452, 655, 683, 704, 775
AleI CACNNNNGTG 1 cut(s) 897
AluBI AGCT 3 cut(s) 526, 629, 904
AluI AGCT 3 cut(s) 526, 629, 904
Alw21I GWGCWC 1 cut(s) 906
AlwI GGATC 3 cut(s) 290, 528, 998
Ama87I CYCGRG 1 cut(s) 324
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 1 cut(s) 588
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
AspS9I GGNCC 2 cut(s) 545, 588
AsuHPI GGTGA 4 cut(s) 82, 143, 313, 911
AsuII TTCGAA 1 cut(s) 189
AvaI CYCGRG 1 cut(s) 324
AvaII GGWCC 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 810
BanI GGYRCC 1 cut(s) 805
BanII GRGCYC 1 cut(s) 906
Bbv12I GWGCWC 1 cut(s) 906
BccI CCATC 5 cut(s) 126, 207, 421, 704, 896
BceAI ACGGC 1 cut(s) 187
BfaI CTAG 4 cut(s) 161, 399, 606, 672
BmcAI AGTACT 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 545
BmeT110I CYCGRG 1 cut(s) 324
BmgT120I GGNCC 2 cut(s) 545, 588
BmiI GGNNCC 2 cut(s) 589, 807
BmrI ACTGGG 2 cut(s) 491, 526
BmsI GCATC 2 cut(s) 39, 123
BmuI ACTGGG 2 cut(s) 491, 526
Bpu14I TTCGAA 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 26, 548, 583
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 1 cut(s) 597
Bse1I ACTGG 3 cut(s) 486, 521, 602
BseAI TCCGGA 1 cut(s) 826
BseDI CCNNGG 3 cut(s) 26, 548, 583
BseGI GGATG 5 cut(s) 114, 715, 719, 760, 888
BseLI CCNNNNNNNGG 1 cut(s) 597
BseNI ACTGG 3 cut(s) 486, 521, 602
BseRI GAGGAG 3 cut(s) 77, 659, 985
BseSI GKGCMC 1 cut(s) 810
Bsh1236I CGCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 590
BshNI GGYRCC 1 cut(s) 805
BsiHKAI GWGCWC 1 cut(s) 906
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 2 cut(s) 233, 827
BsiWI CGTACG 1 cut(s) 661
BslI CCNNNNNNNGG 1 cut(s) 597
BsnI GGCC 1 cut(s) 590
BsoBI CYCGRG 1 cut(s) 324
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 810, 906
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 4 cut(s) 295, 520, 1003, 1016
Bsp19I CCATGG 1 cut(s) 583
BspACI CCGC 2 cut(s) 35, 93
BspANI GGCC 1 cut(s) 590
BspEI TCCGGA 1 cut(s) 826
BspFNI CGCG 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 589, 807
BspPI GGATC 3 cut(s) 290, 528, 998
BspT104I TTCGAA 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 805
BsrI ACTGG 3 cut(s) 486, 521, 602
BssECI CCNNGG 3 cut(s) 26, 548, 583
BssMI GATC 4 cut(s) 295, 520, 1003, 1016
BssT1I CCWWGG 3 cut(s) 26, 548, 583
Bst4CI ACNGT 3 cut(s) 12, 143, 863
BstBI TTCGAA 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 583
BstF5I GGATG 5 cut(s) 114, 715, 719, 760, 888
BstFNI CGCG 1 cut(s) 37
BstKTI GATC 4 cut(s) 298, 523, 1006, 1019
BstMBI GATC 4 cut(s) 295, 520, 1003, 1016
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNSI RCATGY 2 cut(s) 208, 212
BstSLI GKGCMC 1 cut(s) 810
BstUI CGCG 1 cut(s) 37
BsuRI GGCC 1 cut(s) 590
BtgI CCRYGG 1 cut(s) 583
BtsCI GGATG 5 cut(s) 114, 715, 719, 760, 888
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 4 cut(s) 213, 227, 479, 595
Cfr13I GGNCC 2 cut(s) 545, 588
CseI GACGC 1 cut(s) 173
Csp6I GTAC 4 cut(s) 144, 402, 662, 885
CviAII CATG 6 cut(s) 75, 205, 209, 584, 751, 949
CviJI RGCY 9 cut(s) 31, 174, 267, 526, 590, 620, 629, 822, 904
CviKI_1 RGCY 9 cut(s) 31, 174, 267, 526, 590, 620, 629, 822, 904
CviQI GTAC 4 cut(s) 144, 402, 662, 885
DpnI GATC 4 cut(s) 297, 522, 1005, 1018
DpnII GATC 4 cut(s) 295, 520, 1003, 1016
Ecl136II GAGCTC 1 cut(s) 904
Eco130I CCWWGG 3 cut(s) 26, 548, 583
Eco24I GRGCYC 1 cut(s) 906
Eco47I GGWCC 1 cut(s) 545
Eco53kI GAGCTC 1 cut(s) 904
Eco88I CYCGRG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 904
EcoT14I CCWWGG 3 cut(s) 26, 548, 583
EcoT22I ATGCAT 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 906
ErhI CCWWGG 3 cut(s) 26, 548, 583
FaeI CATG 6 cut(s) 78, 208, 212, 587, 754, 952
FatI CATG 6 cut(s) 74, 204, 208, 583, 750, 948
FblI GTMKAC 2 cut(s) 363, 513
FokI GGATG 5 cut(s) 101, 722, 726, 767, 875
FriOI GRGCYC 1 cut(s) 906
FspBI CTAG 4 cut(s) 161, 399, 606, 672
HaeIII GGCC 1 cut(s) 590
HapII CCGG 2 cut(s) 233, 827
HgaI GACGC 1 cut(s) 173
Hin1II CATG 6 cut(s) 78, 208, 212, 587, 754, 952
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 3 cut(s) 41, 236, 329
HpaII CCGG 2 cut(s) 233, 827
HphI GGTGA 4 cut(s) 82, 143, 313, 911
Hpy166II GTNNAC 2 cut(s) 364, 514
Hpy188I TCNGA 8 cut(s) 111, 181, 291, 562, 844, 871, 969, 1016
Hpy188III TCNNGA 8 cut(s) 161, 424, 632, 735, 745, 827, 854, 923
Hpy8I GTNNAC 2 cut(s) 364, 514
Hpy99I CGWCG 1 cut(s) 815
HpyAV CCTTC 5 cut(s) 167, 196, 328, 446, 769
HpyCH4III ACNGT 3 cut(s) 12, 143, 863
HpyCH4IV ACGT 2 cut(s) 249, 739
HpyCH4V TGCA 2 cut(s) 69, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpySE526I ACGT 2 cut(s) 249, 739
Hsp92II CATG 6 cut(s) 78, 208, 212, 587, 754, 952
Kpn2I TCCGGA 1 cut(s) 826
Kzo9I GATC 4 cut(s) 295, 520, 1003, 1016
LmnI GCTCC 2 cut(s) 111, 201
LweI GCATC 2 cut(s) 39, 123
MaeI CTAG 4 cut(s) 161, 399, 606, 672
MaeII ACGT 2 cut(s) 249, 739
MaeIII GTNAC 4 cut(s) 211, 223, 278, 500
MalI GATC 4 cut(s) 297, 522, 1005, 1018
MboI GATC 4 cut(s) 295, 520, 1003, 1016
MboII GAAGA 1 cut(s) 695
MhlI GDGCHC 2 cut(s) 810, 906
MluCI AATT 3 cut(s) 696, 938, 1021
MlyI GAGTC 2 cut(s) 50, 338
MmeI TCCRAC 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 210
MroI TCCGGA 1 cut(s) 826
MseI TTAA 4 cut(s) 312, 468, 801, 1061
MslI CAYNNNNRTG 4 cut(s) 207, 248, 755, 897
MspA1I CMGCKG 1 cut(s) 526
MspI CCGG 2 cut(s) 233, 827
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 626
NcoI CCATGG 1 cut(s) 583
NdeII GATC 4 cut(s) 295, 520, 1003, 1016
NlaIII CATG 6 cut(s) 78, 208, 212, 587, 754, 952
NlaIV GGNNCC 2 cut(s) 589, 807
NmuCI GTSAC 3 cut(s) 211, 223, 500
NsiI ATGCAT 1 cut(s) 210
NspI RCATGY 2 cut(s) 208, 212
NspV TTCGAA 1 cut(s) 189
OliI CACNNNNGTG 1 cut(s) 897
PfeI GAWTC 1 cut(s) 236
Pfl23II CGTACG 1 cut(s) 661
PflFI GACNNNGTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 597
PleI GAGTC 2 cut(s) 49, 337
PpsI GAGTC 2 cut(s) 49, 337
Psp124BI GAGCTC 1 cut(s) 906
PspLI CGTACG 1 cut(s) 661
PspN4I GGNNCC 2 cut(s) 589, 807
PspPI GGNCC 2 cut(s) 545, 588
PsrI GAACNNNNNNTAC 2 cut(s) 374, 406
PsyI GACNNNGTC 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 4 cut(s) 145, 403, 663, 886
RsaNI GTAC 4 cut(s) 144, 402, 662, 885
RseI CAYNNNNRTG 4 cut(s) 207, 248, 755, 897
SacI GAGCTC 1 cut(s) 906
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 4 cut(s) 312, 468, 801, 1061
Sau3AI GATC 4 cut(s) 295, 520, 1003, 1016
Sau96I GGNCC 2 cut(s) 545, 588
ScaI AGTACT 1 cut(s) 145
SchI GAGTC 2 cut(s) 50, 338
SduI GDGCHC 2 cut(s) 810, 906
SfaNI GCATC 2 cut(s) 39, 123
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 4 cut(s) 207, 248, 755, 897
Sse9I AATT 3 cut(s) 696, 938, 1021
SsiI CCGC 2 cut(s) 35, 93
SspMI CTAG 4 cut(s) 161, 399, 606, 672
SstI GAGCTC 1 cut(s) 906
StyI CCWWGG 3 cut(s) 26, 548, 583
TaaI ACNGT 3 cut(s) 12, 143, 863
TaiI ACGT 2 cut(s) 252, 742
TaqI TCGA 3 cut(s) 189, 363, 1019
TasI AATT 3 cut(s) 696, 938, 1021
TatI WGTACW 2 cut(s) 143, 401
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 4 cut(s) 312, 468, 801, 1061
Tru9I TTAA 4 cut(s) 312, 468, 801, 1061
TscAI CASTG 4 cut(s) 220, 234, 486, 602
TseFI GTSAC 3 cut(s) 211, 223, 500
Tsp45I GTSAC 3 cut(s) 211, 223, 500
TspDTI ATGAA 3 cut(s) 228, 232, 965
TspRI CASTG 4 cut(s) 220, 234, 486, 602
Tth111I GACNNNGTC 1 cut(s) 506
Van91I CCANNNNNTGG 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 545
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 2 cut(s) 208, 212
XmiI GTMKAC 2 cut(s) 363, 513
XspI CTAG 4 cut(s) 161, 399, 606, 672
ZrmI AGTACT 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.