Rh4DG365000

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000289
Physical Location & Seq
Reverse (-)
58613759 .. 58614073
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG365000.1

Sequence Viewer

Length: 315 bp
ATGATGTCGCTGTCCCTGTTGGTATATTTAATCCATGCACTCGAGAGTTCACTACTCTTCCAGTTTCTCAATATGCTTCAAAGTCCGGTTCCAACTCTGGGCGGACGTACAGTCTATTATATCGGGTTCAGTCCTCTTACAAACGAGTATAAGGTTTTCCGTGGGGACGTGCATCGTAATTCAAAGACAAGGAGGAGTAGTTTCATGTTCGAGATTTTCACTCTGGGTAGGACAAGTAATTCATGGAGGAATGTACAAAACATAGGCCTCGATGATCCCGATCTGGATGCTGCAGCTATAGCCTACTTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

104

Amino Acids

11.92

Weight (kDa)

8.1

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 36 - 86 1.3e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 269
AfaI GTAC 2 cut(s) 109, 255
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 2 cut(s) 80, 183
AhdI GACNNNNNGTC 1 cut(s) 110
AjiI CACGTC 1 cut(s) 169
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
AlwI GGATC 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 290, 293
AvaI CYCGRG 1 cut(s) 41
BbvI GCAGC 2 cut(s) 277, 305
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BfmI CTRYAG 2 cut(s) 291, 297
BisI GCNGC 2 cut(s) 291, 294
BlsI GCNGC 2 cut(s) 292, 295
BmeRI GACNNNNNGTC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 2 cut(s) 181, 277
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 61
Bse8I GATNNNNATC 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 292
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 277, 305
BshFI GGCC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 267
BsoBI CYCGRG 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 2 cut(s) 274, 280
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 295
BspPI GGATC 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 274, 280
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 2 cut(s) 277, 283
BstMBI GATC 2 cut(s) 274, 280
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstSFI CTRYAG 2 cut(s) 291, 297
BstV1I GCAGC 2 cut(s) 277, 305
BsuRI GGCC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 160
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 292
Csp6I GTAC 2 cut(s) 108, 254
CviAII CATG 3 cut(s) 35, 205, 243
CviJI RGCY 3 cut(s) 267, 296, 302
CviKI_1 RGCY 3 cut(s) 267, 296, 302
CviQI GTAC 2 cut(s) 108, 254
DpnI GATC 2 cut(s) 276, 282
DpnII GATC 2 cut(s) 274, 280
DriI GACNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 41
FaeI CATG 3 cut(s) 38, 208, 246
FaiI YATR 9 cut(s) 25, 36, 74, 120, 150, 206, 244, 263, 299
FaqI GGGAC 1 cut(s) 179
FatI CATG 3 cut(s) 34, 204, 242
Fnu4HI GCNGC 2 cut(s) 291, 294
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 2 cut(s) 291, 294
GluI GCNGC 2 cut(s) 291, 294
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 86
Hin1II CATG 3 cut(s) 38, 208, 246
HpaII CCGG 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 50
Hpy188III TCNNGA 4 cut(s) 43, 211, 278, 284
Hpy8I GTNNAC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 2 cut(s) 106, 168
HpyCH4V TGCA 3 cut(s) 38, 172, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpySE526I ACGT 2 cut(s) 106, 168
Hsp92II CATG 3 cut(s) 38, 208, 246
Kzo9I GATC 2 cut(s) 274, 280
LpnPI CCDG 6 cut(s) 29, 74, 83, 99, 209, 269
Lsp1109I GCAGC 2 cut(s) 277, 305
LweI GCATC 2 cut(s) 181, 277
MaeII ACGT 2 cut(s) 106, 168
MalI GATC 2 cut(s) 276, 282
MboI GATC 2 cut(s) 274, 280
MboII GAAGA 1 cut(s) 49
MluCI AATT 2 cut(s) 178, 238
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 4 cut(s) 144, 186, 240, 278
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 2 cut(s) 274, 280
NlaIII CATG 3 cut(s) 38, 208, 246
NlaIV GGNNCC 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 41
PceI AGGCCT 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PkrI GCNGC 2 cut(s) 292, 295
PspN4I GGNNCC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 295
RsaI GTAC 2 cut(s) 109, 255
RsaNI GTAC 2 cut(s) 108, 254
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 291, 294
Sau3AI GATC 2 cut(s) 274, 280
SetI ASST 4 cut(s) 109, 156, 171, 298
SfaNI GCATC 2 cut(s) 181, 277
SfcI CTRYAG 2 cut(s) 291, 297
Sfr274I CTCGAG 1 cut(s) 41
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 2 cut(s) 178, 238
SseBI AGGCCT 1 cut(s) 267
SsiI CCGC 1 cut(s) 102
StuI AGGCCT 1 cut(s) 267
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 2 cut(s) 109, 171
TaqI TCGA 3 cut(s) 42, 210, 270
TasI AATT 2 cut(s) 178, 238
TatI WGTACW 1 cut(s) 253
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseI GCWGC 2 cut(s) 290, 293
TspDTI ATGAA 2 cut(s) 193, 231
TspGWI ACGGA 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.