pycom13g04550

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000289
Physical Location & Seq
Forward (+)
3069308 .. 3069785
478 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g04550.1

Sequence Viewer

Length: 324 bp
ATGGCTTCTTCTTCTCCTTGCAAATCGATGAACAAGGGAAACCAACGCCTGTCACCCGTCTTTCGTACAATTCTGCGTGCGGTACTCCCCCGGTTGTACATCAGAGCATCAACCTGCCTGGTCTGTGCATCCAGTTGTTCGATCCCTGTCCTTATGTTTAACCCTACTACACGAGAGTCCATCAAACTCCCTCGTACAGGTACACTCCGCGTTACATATCACTTTGGGTTTAATCCGATTGCAAACTACGTTTGTTTCCAAGGGGCCATCCATTGGATGCATGAAAGGAAAAATGTTATAGTGGTATTTGATGTTGGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

108

Amino Acids

12.04

Weight (kDa)

9.97

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 273
AccII CGCG 1 cut(s) 210
AciI CCGC 2 cut(s) 80, 208
AclWI GGATC 1 cut(s) 136
AfaI GTAC 5 cut(s) 67, 84, 98, 196, 202
AfiI CCNNNNNNNGG 2 cut(s) 197, 273
AjnI CCWGG 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 1 cut(s) 136
AoxI GGCC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 45
BauI CACGAG 1 cut(s) 171
BccI CCATC 2 cut(s) 188, 275
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 122
Bme1390I CCNGG 2 cut(s) 91, 119
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 2 cut(s) 91, 119
BmsI GCATC 3 cut(s) 116, 137, 267
BpuMI CCSGG 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 89, 259
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 273
Bse1I ACTGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 89, 259
BseGI GGATG 3 cut(s) 128, 267, 282
BseLI CCNNNNNNNGG 2 cut(s) 197, 273
BseNI ACTGG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 26
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 197, 273
BsmAI GTCTC 1 cut(s) 312
BsnI GGCC 1 cut(s) 266
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 2 cut(s) 80, 208
BspANI GGCC 1 cut(s) 266
BspDI ATCGAT 1 cut(s) 26
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 89, 259
BssMI GATC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 259
Bst2BI CACGAG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 78
BstENI CCTNNNNNAGG 1 cut(s) 195
BstF5I GGATG 3 cut(s) 128, 267, 282
BstFNI CGCG 1 cut(s) 210
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 89, 117
BstUI CGCG 1 cut(s) 210
Bsu15I ATCGAT 1 cut(s) 26
BsuRI GGCC 1 cut(s) 266
BsuTUI ATCGAT 1 cut(s) 26
BtsCI GGATG 3 cut(s) 128, 267, 282
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 264
ClaI ATCGAT 1 cut(s) 26
Csp6I GTAC 5 cut(s) 66, 83, 97, 195, 201
CviAII CATG 1 cut(s) 281
CviJI RGCY 2 cut(s) 5, 266
CviKI_1 RGCY 2 cut(s) 5, 266
CviQI GTAC 5 cut(s) 66, 83, 97, 195, 201
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 284
FaiI YATR 4 cut(s) 155, 217, 282, 299
FatI CATG 1 cut(s) 280
FokI GGATG 3 cut(s) 115, 254, 289
FspBI CTAG 1 cut(s) 322
HaeIII GGCC 1 cut(s) 266
HapII CCGG 1 cut(s) 91
Hin1II CATG 1 cut(s) 284
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 91
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 104, 237
Hpy8I GTNNAC 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 4 cut(s) 21, 128, 242, 280
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 1 cut(s) 284
Kzo9I GATC 1 cut(s) 141
LpnPI CCDG 8 cut(s) 62, 104, 104, 127, 131, 145, 159, 183
LweI GCATC 3 cut(s) 116, 137, 267
MaeI CTAG 1 cut(s) 322
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 51, 211
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 1 cut(s) 3
MluCI AATT 1 cut(s) 69
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 282
MseI TTAA 2 cut(s) 159, 231
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 2 cut(s) 91, 119
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 210
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 141
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 282
PflMI CCANNNNNTGG 1 cut(s) 273
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 264
RsaI GTAC 5 cut(s) 67, 84, 98, 196, 202
RsaNI GTAC 5 cut(s) 66, 83, 97, 195, 201
SaqAI TTAA 2 cut(s) 159, 231
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 91, 119
SetI ASST 3 cut(s) 116, 202, 252
SfaNI GCATC 3 cut(s) 116, 137, 267
Sse9I AATT 1 cut(s) 69
SsiI CCGC 2 cut(s) 80, 208
SspMI CTAG 1 cut(s) 322
StyD4I CCNGG 2 cut(s) 89, 117
StyI CCWWGG 1 cut(s) 259
TaiI ACGT 1 cut(s) 252
TaqI TCGA 2 cut(s) 26, 140
TasI AATT 1 cut(s) 69
TatI WGTACW 1 cut(s) 96
Tru1I TTAA 2 cut(s) 159, 231
Tru9I TTAA 2 cut(s) 159, 231
TseFI GTSAC 1 cut(s) 51
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 44, 297
Van91I CCANNNNNTGG 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 195
XspI CTAG 1 cut(s) 322
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.