FvH4_4g30190

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000289
Physical Location & Seq
Forward (+)
29945654 .. 29946544
891 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30190.t1

Sequence Viewer

Length: 891 bp
ATGGCTAAACGTAGACGCATAAAATTAGGTCAAGTTGAAGAAGTAGTCCCAAATCTCCCGGCAGATCTCAGATTTGAGAACTTCCCAAATCTCCCGGCAGATCTCAGTTTTGAGATCTTCTCAAGGCTACCGGCCAAGTCGTTGTTCCGCTGCAAGTGCGTATGCAAGTCATGGTCCTCTTTCATTCGTAGTCCATCTTTTGTCACTGCTTACCAAAACAATCTCAAGAATCTCAACCAACACACCACTAACCTTTTCTTCACCATCCCTGGAAAACAAAGTCAGTTCTTCTCGACACGAGTCTACCATGATAAGTCTGGGATTCTTAATACTACACCTCCCATTCGCCTTTTTAGCGCTCCATATTGGGTTTCGTACCCCTTTTCTTCATGCTATTTAGCCGCTTCGTCCGGCCTAGTCTGTCATTTTGACTTAAAGGTACCTTTGAAACGTGTTCAATTACCTGTTCATATATCCAACCTCTACACCGGAGAGGTCGCTACTTTTCAATTGCCGCGGCGCCTCTATACCAAAGTTGCTGTTGCTCTTGGGTTCAGTTCTCTTACAAACGTGTATAAGGTATTCACATCCCTTCGTACCGGGACTACGGGGGTCAAGTTCAAGGTTTTCACTCTAGGTGGTACAAGTAATACATGGAAGGATGTAGCAGATATAGACTTTGAAGCTCTTGGTCTTGATCCTCACCGATTGAATTTCTCGGCACATTATTTGTGCATCCATGGAGCCATACATTGGATGCAATGGTTTTATTGTAAGAATTATCGACCTATTCTTTTGGCTTTTGACGTTGTAGAAGAGAGATTCAGAGTAATCCTACTTCCCCAAGATTTTAAGTGTGGCCACTATCGAGTAATTGAAGTGAACGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

297

Amino Acids

33.96

Weight (kDa)

9.62

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 28 - 67 4.6e-12 F-box domain
F-box-like PF12937 29 - 66 2.8e-10 F-box-like
FBA_3 PF08268 108 - 293 6.1e-17 F-box associated beta propeller domain
FBA_1 PF07734 156 - 287 6.3e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 439
AccB1I GGYRCC 2 cut(s) 439, 519
AccB7I CCANNNNNTGG 1 cut(s) 753
AccI GTMKAC 2 cut(s) 13, 303
AccII CGCG 1 cut(s) 517
AciI CCGC 4 cut(s) 148, 402, 515, 517
AclWI GGATC 1 cut(s) 692
AcoI YGGCCR 2 cut(s) 132, 859
AcsI RAATTY 1 cut(s) 712
AcyI GRCGYC 1 cut(s) 520
AfaI GTAC 4 cut(s) 377, 441, 598, 643
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 753
AflIII ACRYGT 2 cut(s) 451, 570
AgsI TTSAA 8 cut(s) 38, 448, 458, 509, 622, 683, 712, 878
AjnI CCWGG 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 1 cut(s) 686
AluI AGCT 1 cut(s) 686
AlwI GGATC 1 cut(s) 692
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 3 cut(s) 132, 412, 859
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 712
Asp718I GGTACC 1 cut(s) 439
AspLEI GCGC 2 cut(s) 359, 522
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 3 cut(s) 59, 95, 601
AsuHPI GGTGA 2 cut(s) 253, 695
AvaII GGWCC 1 cut(s) 174
BalI TGGCCA 1 cut(s) 861
BanI GGYRCC 2 cut(s) 439, 519
BarI GAAGNNNNNNTAC 2 cut(s) 822, 854
BauI CACGAG 1 cut(s) 297
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 202, 272
BciT130I CCWGG 1 cut(s) 270
BcnI CCSGG 3 cut(s) 59, 95, 601
BfaI CTAG 2 cut(s) 416, 635
BfoI RGCGCY 2 cut(s) 360, 523
BglII AGATCT 3 cut(s) 64, 100, 114
BisI GCNGC 4 cut(s) 151, 402, 515, 518
BlsI GCNGC 4 cut(s) 152, 403, 516, 519
Bme1390I CCNGG 4 cut(s) 59, 95, 270, 601
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 3 cut(s) 441, 521, 745
BmrFI CCNGG 4 cut(s) 59, 95, 270, 601
BmsI GCATC 2 cut(s) 744, 747
BoxI GACNNNNGTC 1 cut(s) 299
BplI GAGNNNNNCTC 2 cut(s) 104, 136
BpuEI CTTGAG 2 cut(s) 106, 209
BpuMI CCSGG 3 cut(s) 59, 95, 601
BsaHI GRCGYC 1 cut(s) 520
BsaJI CCNNGG 3 cut(s) 268, 515, 739
BsaWI WCCGGW 1 cut(s) 488
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 753
Bse118I RCCGGY 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 767
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 268, 515, 739
BseGI GGATG 5 cut(s) 264, 587, 667, 735, 762
BseLI CCNNNNNNNGG 1 cut(s) 753
BseMI GCAATG 1 cut(s) 767
BseMII CTCAG 2 cut(s) 82, 118
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 517
BshFI GGCC 3 cut(s) 134, 414, 861
BshNI GGYRCC 2 cut(s) 439, 519
BsiSI CCGG 6 cut(s) 59, 95, 131, 411, 489, 600
BslFI GGGAC 2 cut(s) 32, 616
BslI CCNNNNNNNGG 1 cut(s) 753
BsmFI GGGAC 2 cut(s) 32, 616
BsnI GGCC 3 cut(s) 134, 414, 861
Bsp143I GATC 4 cut(s) 64, 100, 114, 697
Bsp19I CCATGG 1 cut(s) 739
BspACI CCGC 4 cut(s) 148, 402, 515, 517
BspANI GGCC 3 cut(s) 134, 414, 861
BspCNI CTCAG 2 cut(s) 81, 117
BspFNI CGCG 1 cut(s) 517
BspLI GGNNCC 3 cut(s) 441, 521, 745
BspPI GGATC 1 cut(s) 692
BspT107I GGYRCC 2 cut(s) 439, 519
BsrDI GCAATG 1 cut(s) 767
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 268, 515, 739
BssMI GATC 4 cut(s) 64, 100, 114, 697
BssNI GRCGYC 1 cut(s) 520
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 739
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 810
BstACI GRCGYC 1 cut(s) 520
BstDEI CTNAG 2 cut(s) 68, 104
BstDSI CCRYGG 2 cut(s) 515, 739
BstF5I GGATG 5 cut(s) 264, 587, 667, 735, 762
BstFNI CGCG 1 cut(s) 517
BstH2I RGCGCY 2 cut(s) 360, 523
BstHHI GCGC 2 cut(s) 359, 522
BstKTI GATC 4 cut(s) 67, 103, 117, 700
BstMBI GATC 4 cut(s) 64, 100, 114, 697
BstMWI GCNNNNNNNGC 2 cut(s) 156, 354
BstNI CCWGG 1 cut(s) 270
BstPAI GACNNNNGTC 1 cut(s) 299
BstSCI CCNGG 4 cut(s) 57, 93, 268, 599
BstUI CGCG 1 cut(s) 517
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 3 cut(s) 64, 100, 114
BstYI RGATCY 3 cut(s) 64, 100, 114
BsuRI GGCC 3 cut(s) 134, 414, 861
BtgI CCRYGG 2 cut(s) 515, 739
BtsCI GGATG 5 cut(s) 264, 587, 667, 735, 762
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
CfoI GCGC 2 cut(s) 359, 522
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 174
Cfr42I CCGCGG 1 cut(s) 518
CseI GACGC 1 cut(s) 24
Csp6I GTAC 4 cut(s) 376, 440, 597, 642
CviAII CATG 5 cut(s) 171, 308, 390, 654, 740
CviJI RGCY 9 cut(s) 5, 127, 134, 401, 414, 686, 746, 800, 861
CviKI_1 RGCY 9 cut(s) 5, 127, 134, 401, 414, 686, 746, 800, 861
CviQI GTAC 4 cut(s) 376, 440, 597, 642
DdeI CTNAG 2 cut(s) 68, 104
DinI GGCGCC 1 cut(s) 521
DpnI GATC 4 cut(s) 66, 102, 116, 699
DpnII GATC 4 cut(s) 64, 100, 114, 697
EaeI YGGCCR 2 cut(s) 132, 859
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Eco130I CCWWGG 1 cut(s) 739
Eco47I GGWCC 1 cut(s) 174
Eco47III AGCGCT 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 739
EgeI GGCGCC 1 cut(s) 521
EheI GGCGCC 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 5 cut(s) 174, 311, 393, 657, 743
FaqI GGGAC 2 cut(s) 32, 616
FatI CATG 5 cut(s) 170, 307, 389, 653, 739
FblI GTMKAC 2 cut(s) 13, 303
Fnu4HI GCNGC 4 cut(s) 151, 402, 515, 518
FokI GGATG 5 cut(s) 251, 574, 674, 722, 769
Fsp4HI GCNGC 4 cut(s) 151, 402, 515, 518
FspBI CTAG 2 cut(s) 416, 635
GlaI GCGC 2 cut(s) 358, 521
GluI GCNGC 4 cut(s) 151, 402, 515, 518
HaeII RGCGCY 2 cut(s) 360, 523
HaeIII GGCC 3 cut(s) 134, 414, 861
HapII CCGG 6 cut(s) 59, 95, 131, 411, 489, 600
HgaI GACGC 1 cut(s) 24
HhaI GCGC 2 cut(s) 359, 522
Hin1I GRCGYC 1 cut(s) 520
Hin1II CATG 5 cut(s) 174, 311, 393, 657, 743
Hin6I GCGC 2 cut(s) 357, 520
HinP1I GCGC 2 cut(s) 357, 520
HinfI GANTC 4 cut(s) 229, 300, 322, 822
HpaII CCGG 6 cut(s) 59, 95, 131, 411, 489, 600
HphI GGTGA 2 cut(s) 253, 695
Hpy166II GTNNAC 3 cut(s) 14, 304, 883
Hpy188I TCNGA 2 cut(s) 71, 827
Hpy188III TCNNGA 3 cut(s) 226, 292, 695
Hpy8I GTNNAC 3 cut(s) 14, 304, 883
HpyAV CCTTC 2 cut(s) 602, 652
HpyCH4IV ACGT 4 cut(s) 10, 451, 570, 807
HpyCH4V TGCA 4 cut(s) 153, 165, 735, 760
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 354
HpyF3I CTNAG 2 cut(s) 68, 104
HpySE526I ACGT 4 cut(s) 10, 451, 570, 807
Hsp92I GRCGYC 1 cut(s) 520
Hsp92II CATG 5 cut(s) 174, 311, 393, 657, 743
HspAI GCGC 2 cut(s) 357, 520
KasI GGCGCC 1 cut(s) 519
KpnI GGTACC 1 cut(s) 443
KspI CCGCGG 1 cut(s) 518
Kzo9I GATC 4 cut(s) 64, 100, 114, 697
LmnI GCTCC 2 cut(s) 364, 743
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 2 cut(s) 744, 747
MaeI CTAG 2 cut(s) 416, 635
MaeII ACGT 4 cut(s) 10, 451, 570, 807
MaeIII GTNAC 1 cut(s) 202
MalI GATC 4 cut(s) 66, 102, 116, 699
MboI GATC 4 cut(s) 64, 100, 114, 697
MboII GAAGA 6 cut(s) 50, 109, 250, 280, 378, 827
MfeI CAATTG 1 cut(s) 509
MflI RGATCY 3 cut(s) 64, 100, 114
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 6 cut(s) 23, 458, 509, 712, 778, 873
MluNI TGGCCA 1 cut(s) 861
Mly113I GGCGCC 1 cut(s) 520
MlyI GAGTC 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 6 cut(s) 187, 348, 487, 491, 533, 711
Mox20I TGGCCA 1 cut(s) 861
MscI TGGCCA 1 cut(s) 861
MseI TTAA 3 cut(s) 327, 434, 852
Msp20I TGGCCA 1 cut(s) 861
MspA1I CMGCKG 2 cut(s) 150, 517
MspI CCGG 6 cut(s) 59, 95, 131, 411, 489, 600
MspR9I CCNGG 4 cut(s) 59, 95, 270, 601
MunI CAATTG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 517
MwoI GCNNNNNNNGC 2 cut(s) 156, 354
NarI GGCGCC 1 cut(s) 520
NciI CCSGG 3 cut(s) 59, 95, 601
NcoI CCATGG 1 cut(s) 739
NdeII GATC 4 cut(s) 64, 100, 114, 697
NlaIII CATG 5 cut(s) 174, 311, 393, 657, 743
NlaIV GGNNCC 3 cut(s) 441, 521, 745
NmeAIII GCCGAG 1 cut(s) 698
NmuCI GTSAC 1 cut(s) 202
PfeI GAWTC 3 cut(s) 229, 322, 822
PflMI CCANNNNNTGG 1 cut(s) 753
PkrI GCNGC 4 cut(s) 152, 403, 516, 519
PleI GAGTC 1 cut(s) 308
PluTI GGCGCC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 308
PshAI GACNNNNGTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 3 cut(s) 441, 521, 745
PspPI GGNCC 1 cut(s) 174
PsuI RGATCY 3 cut(s) 64, 100, 114
RsaI GTAC 4 cut(s) 377, 441, 598, 643
RsaNI GTAC 4 cut(s) 376, 440, 597, 642
SacII CCGCGG 1 cut(s) 518
SaqAI TTAA 3 cut(s) 327, 434, 852
SatI GCNGC 4 cut(s) 151, 402, 515, 518
Sau3AI GATC 4 cut(s) 64, 100, 114, 697
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 4 cut(s) 59, 95, 270, 601
SfaNI GCATC 2 cut(s) 744, 747
SfoI GGCGCC 1 cut(s) 521
Sfr303I CCGCGG 1 cut(s) 518
SgrBI CCGCGG 1 cut(s) 518
SinI GGWCC 1 cut(s) 174
SmlI CTYRAG 2 cut(s) 121, 224
SmoI CTYRAG 2 cut(s) 121, 224
Sse9I AATT 6 cut(s) 23, 458, 509, 712, 778, 873
SsiI CCGC 4 cut(s) 148, 402, 515, 517
SspDI GGCGCC 1 cut(s) 519
SspMI CTAG 2 cut(s) 416, 635
StyD4I CCNGG 4 cut(s) 57, 93, 268, 599
StyI CCWWGG 1 cut(s) 739
TaiI ACGT 4 cut(s) 13, 454, 573, 810
TaqI TCGA 3 cut(s) 293, 784, 868
TasI AATT 6 cut(s) 23, 458, 509, 712, 778, 873
TauI GCSGC 3 cut(s) 404, 517, 520
TfiI GAWTC 3 cut(s) 229, 322, 822
Tru1I TTAA 3 cut(s) 327, 434, 852
Tru9I TTAA 3 cut(s) 327, 434, 852
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 172, 378, 458
TspRI CASTG 1 cut(s) 211
Van91I CCANNNNNTGG 1 cut(s) 753
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmiI GTMKAC 2 cut(s) 13, 303
XspI CTAG 2 cut(s) 416, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.