FvH4_4g28510

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000289
Physical Location & Seq
Forward (+)
29127441 .. 29129458
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28510.t1

Sequence Viewer

Length: 738 bp
ATGTGGAAGTTCATAGTTCAAACTGCTACCCAGTTGAGCTGGTTGTTCAACTACTTGCTTTTCTGTTCTTTTGCCAGACCCAGCTACGAGTATGAATTACCTACAGAAGCTACAGAGACTACTCGTATTAGCACAGTCCACTACGAAAGCCCCGACAGTGCTGTGAGTTCTGAAGTTGAATGTGCTGTGTGTCTATGCAAAATTAAGGAAGGAGCAGAGATAAGAGAGCTAAAATGTGCTCATCTCTTTCATAAAGCTTGCTTGGACCGCTGGACAGATGCGTCTGCAAATCATGGTCCGCTCTTACCCGCCACCTTTCTTTTCTCGCCGTCCACCGCAGCTTCCGGTGCAGCCCAGCTTCCACTAACCTCCTCTTCACCATCCGATGAGCATGTTAATGAAAAACCTGTTTATGTTTTTAATCCCTACACTGAAGAGATTATAACTCTTCCCCGCCCCAACCTCGTATACGGTTTGTACTACCCTGCACAAGATTTTATGTTGCTGTGGATTTTGGAGGATTACGAAAATCATGTGTGGGTTAAGAAGACTATCATATTTCCCTCCAGTTGGCAGAAATCCCCTCATCCGTTGGGTACAATCCACGCAGGTGAGCTCCTGTTCAAGAAGAACGACAGCTTTCGAGAATGTAAGATTAGTTTGCCTGTGGGGAATAATGGTCTATGTAGCTTGCTTACTGTTAGTTATGATGAAAGTGTGATCTCCTTGAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

246

Amino Acids

27.67

Weight (kDa)

5.48

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 60 - 95 2.3e-09 Ring finger domain
zf-RING_11 PF17123 60 - 88 1.6e-08 RING-like zinc finger
FBA_3 PF08268 167 - 212 5.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
AarI CACCTGC 1 cut(s) 599
AasI GACNNNNNNGTC 1 cut(s) 280
Acc36I ACCTGC 1 cut(s) 599
AccBSI CCGCTC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 468
AciI CCGC 5 cut(s) 268, 299, 309, 336, 454
AcuI CTGAAG 2 cut(s) 192, 453
AfaI GTAC 2 cut(s) 479, 598
AfiI CCNNNNNNNGG 1 cut(s) 570
AgsI TTSAA 4 cut(s) 20, 49, 179, 625
AleI CACNNNNGTG 1 cut(s) 609
Alw21I GWGCWC 2 cut(s) 241, 618
Alw26I GTCTC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 338, 350
AspS9I GGNCC 2 cut(s) 265, 296
AsuHPI GGTGA 2 cut(s) 369, 623
AvaII GGWCC 2 cut(s) 265, 296
BanII GRGCYC 1 cut(s) 618
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 2 cut(s) 241, 618
BbvI GCAGC 2 cut(s) 350, 362
BccI CCATC 1 cut(s) 388
BceAI ACGGC 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 110
BfmI CTRYAG 2 cut(s) 102, 111
BfuAI ACCTGC 1 cut(s) 599
BisI GCNGC 2 cut(s) 339, 351
BlsI GCNGC 2 cut(s) 340, 352
Bme18I GGWCC 2 cut(s) 265, 296
BmgT120I GGNCC 2 cut(s) 265, 296
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 554
BpmI CTGGAG 1 cut(s) 550
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 570
Bse1I ACTGG 2 cut(s) 31, 567
BseGI GGATG 2 cut(s) 380, 586
BseLI CCNNNNNNNGG 1 cut(s) 570
BseNI ACTGG 2 cut(s) 31, 567
BseRI GAGGAG 1 cut(s) 361
BseXI GCAGC 2 cut(s) 350, 362
BseYI CCCAGC 2 cut(s) 80, 354
BsgI GTGCAG 2 cut(s) 369, 471
BsiHKAI GWGCWC 2 cut(s) 241, 618
BsiSI CCGG 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 570
BsmAI GTCTC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 241, 618
Bsp143I GATC 2 cut(s) 720, 731
BspACI CCGC 5 cut(s) 268, 299, 309, 336, 454
BspHI TCATGA 1 cut(s) 734
BspMI ACCTGC 1 cut(s) 599
BsrBI CCGCTC 1 cut(s) 301
BsrI ACTGG 2 cut(s) 31, 567
BssMI GATC 2 cut(s) 720, 731
BssNAI GTATAC 1 cut(s) 469
Bst1107I GTATAC 1 cut(s) 469
Bst4CI ACNGT 4 cut(s) 136, 158, 473, 700
Bst6I CTCTTC 3 cut(s) 379, 429, 453
BstC8I GCNNGC 2 cut(s) 259, 692
BstF5I GGATG 2 cut(s) 380, 586
BstKTI GATC 2 cut(s) 723, 734
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 720, 731
BstMWI GCNNNNNNNGC 2 cut(s) 267, 347
BstNSI RCATGY 1 cut(s) 395
BstSFI CTRYAG 2 cut(s) 102, 111
BstV1I GCAGC 2 cut(s) 350, 362
BstV2I GAAGAC 1 cut(s) 554
BstZ17I GTATAC 1 cut(s) 469
BtsCI GGATG 2 cut(s) 380, 586
BtsIMutI CAGTG 2 cut(s) 163, 429
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 2 cut(s) 259, 692
CciI TCATGA 1 cut(s) 734
Cfr13I GGNCC 2 cut(s) 265, 296
CseI GACGC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 478, 597
CviAII CATG 4 cut(s) 293, 392, 533, 735
CviQI GTAC 2 cut(s) 478, 597
DpnI GATC 2 cut(s) 722, 733
DpnII GATC 2 cut(s) 720, 731
DrdI GACNNNNNNGTC 1 cut(s) 280
DseDI GACNNNNNNGTC 1 cut(s) 280
Eam1104I CTCTTC 3 cut(s) 379, 429, 453
EarI CTCTTC 3 cut(s) 379, 429, 453
Ecl136II GAGCTC 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 618
Eco47I GGWCC 2 cut(s) 265, 296
Eco53kI GAGCTC 1 cut(s) 616
Eco57I CTGAAG 2 cut(s) 192, 453
EcoICRI GAGCTC 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 618
FaeI CATG 4 cut(s) 296, 395, 536, 738
FatI CATG 4 cut(s) 292, 391, 532, 734
FauI CCCGC 2 cut(s) 316, 461
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 2 cut(s) 339, 351
FokI GGATG 2 cut(s) 367, 573
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 2 cut(s) 339, 351
GluI GCNGC 2 cut(s) 339, 351
GsaI CCCAGC 2 cut(s) 84, 358
GsuI CTGGAG 1 cut(s) 550
HapII CCGG 1 cut(s) 345
HgaI GACGC 1 cut(s) 270
Hin1II CATG 4 cut(s) 296, 395, 536, 738
HindIII AAGCTT 1 cut(s) 255
HpaII CCGG 1 cut(s) 345
HphI GGTGA 2 cut(s) 369, 623
Hpy166II GTNNAC 3 cut(s) 139, 333, 469
Hpy188I TCNGA 2 cut(s) 172, 385
Hpy188III TCNNGA 3 cut(s) 625, 644, 735
Hpy8I GTNNAC 3 cut(s) 139, 333, 469
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 4 cut(s) 136, 158, 473, 700
HpyCH4V TGCA 4 cut(s) 198, 287, 350, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 347
Hsp92II CATG 4 cut(s) 296, 395, 536, 738
Kzo9I GATC 2 cut(s) 720, 731
LmnI GCTCC 2 cut(s) 212, 621
Lsp1109I GCAGC 2 cut(s) 350, 362
LweI GCATC 1 cut(s) 268
MalI GATC 2 cut(s) 722, 733
MbiI CCGCTC 1 cut(s) 301
MboI GATC 2 cut(s) 720, 731
MboII GAAGA 5 cut(s) 366, 440, 446, 559, 640
MhlI GDGCHC 2 cut(s) 241, 618
MluCI AATT 2 cut(s) 95, 201
MnlI CCTC 6 cut(s) 379, 382, 473, 511, 574, 594
MseI TTAA 4 cut(s) 204, 396, 420, 543
MslI CAYNNNNRTG 2 cut(s) 396, 609
MspA1I CMGCKG 1 cut(s) 270
MspI CCGG 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 267, 347
NdeII GATC 2 cut(s) 720, 731
NlaIII CATG 4 cut(s) 296, 395, 536, 738
NspI RCATGY 1 cut(s) 395
OliI CACNNNNGTG 1 cut(s) 609
PagI TCATGA 1 cut(s) 734
PaqCI CACCTGC 1 cut(s) 599
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PkrI GCNGC 2 cut(s) 340, 352
PsiI TTATAA 1 cut(s) 443
Psp124BI GAGCTC 1 cut(s) 618
PspFI CCCAGC 2 cut(s) 80, 354
PspPI GGNCC 2 cut(s) 265, 296
RsaI GTAC 2 cut(s) 479, 598
RsaNI GTAC 2 cut(s) 478, 597
RseI CAYNNNNRTG 2 cut(s) 396, 609
SacI GAGCTC 1 cut(s) 618
SaqAI TTAA 4 cut(s) 204, 396, 420, 543
SatI GCNGC 2 cut(s) 339, 351
Sau3AI GATC 2 cut(s) 720, 731
Sau96I GGNCC 2 cut(s) 265, 296
SduI GDGCHC 2 cut(s) 241, 618
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 2 cut(s) 102, 111
SinI GGWCC 2 cut(s) 265, 296
SmiMI CAYNNNNRTG 2 cut(s) 396, 609
SmlI CTYRAG 1 cut(s) 727
SmoI CTYRAG 1 cut(s) 727
Sse9I AATT 2 cut(s) 95, 201
SsiI CCGC 5 cut(s) 268, 299, 309, 336, 454
SstI GAGCTC 1 cut(s) 618
TaaI ACNGT 4 cut(s) 136, 158, 473, 700
TaqI TCGA 1 cut(s) 643
TasI AATT 2 cut(s) 95, 201
TatI WGTACW 1 cut(s) 477
Tru1I TTAA 4 cut(s) 204, 396, 420, 543
Tru9I TTAA 4 cut(s) 204, 396, 420, 543
TscAI CASTG 2 cut(s) 163, 436
TseI GCWGC 2 cut(s) 338, 350
TspDTI ATGAA 4 cut(s) 108, 239, 414, 726
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 2 cut(s) 163, 436
VpaK11BI GGWCC 2 cut(s) 265, 296
XceI RCATGY 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.