Prupe.1G300600_v2.0.a1

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000289
Physical Location & Seq
Reverse (-)
29520589 .. 29521642
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G300600.1

Sequence Viewer

Length: 945 bp
ATGGAAGCTTATCATGACCATCCAATCCCGGAGCTCCCAACCAAAATCATATTCTCTCATATACTCCCACGGCTTCCGGCAGAGGATCTGATGACTCGATGCCGGTGCGTATGCAAGTCTTGGTCCTCCCTCATCCGCAGCCCTTCCTTTGTCGCCGCCTTCCACAACTTTCACTGCAACGACAAGCGCACCACTCACTTCCTTTTCCAAAAGCCGTTTTGTCATGGTATGCAGAGTGTCCATGGCTTGGTTTGTGCGTCCACTGTGTTTGACGACCATGTTTCCATACTTAACCCTACCACTAGAGAGTCCATTGAACTTCCCCATACCGATGTGCTTGCACTAACAGAAGGAGTTTCCAATGCTCAATATTACTTTGGGTTCAGTCCCCTCACAAACGAGTATAAGGTTCTGCAGATCATTTGTGTTGATCCCAGTGGACTTGGAAAATTGGATACTGGGTTGTTGAACATATTCACAATAGGTAGAGATTCTTCGTGGAGGCCATTGTGGGTAGACCAACACAGCGACCTTCTGGAGGGGTTAGTCAATGGAGTGTGTATCAATGGGCTCCATGAGAAGCAGAAAGTGATAGTGGCTTTTGACGTTAGAGAGGAGACATTCAGAGTGTTGCCACTACCCCAAGATTATGCTCAAGTGTTTGATGATTATGTTGATCAAGATAATCATCTCTATCGTGATGGAAGTGTAGCCGATACTTATTGCCTACAAAGTGCATGTGTAGTTGAGGTGGGGGAATATGTGGGTGTGTTTGTTGACAAGTCGTGGAAGCAGGACAAGATCGTATTATGGATTTTGAAGGACAATCAAAACCATGTGTGGGTTAAGGAGACTATTAGCTTGATGTTGGAAAAAACATATGGCGAAGGTGGGTGCTACGTTGAAGCTCTAGGTACAGTTCACACAGGTGAGTACACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

315

Amino Acids

35.64

Weight (kDa)

5.37

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 247
AccI GTMKAC 1 cut(s) 516
AciI CCGC 2 cut(s) 136, 156
AclWI GGATC 2 cut(s) 93, 425
AfaI GTAC 2 cut(s) 916, 935
AfiI CCNNNNNNNGG 3 cut(s) 247, 538, 841
AgsI TTSAA 4 cut(s) 317, 469, 820, 905
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AleI CACNNNNGTG 1 cut(s) 927
AluBI AGCT 4 cut(s) 8, 34, 861, 908
AluI AGCT 4 cut(s) 8, 34, 861, 908
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 611, 845
AlwI GGATC 2 cut(s) 93, 425
AoxI GGCC 1 cut(s) 503
ApeKI GCWGC 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 473
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 123
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 941
AvaII GGWCC 1 cut(s) 123
BanII GRGCYC 2 cut(s) 36, 573
BarI GAAGNNNNNNTAC 2 cut(s) 478, 510
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 150
BccI CCATC 2 cut(s) 27, 695
BceAI ACGGC 2 cut(s) 86, 199
BcgI CGANNNNNNTGC 4 cut(s) 87, 121, 320, 354
BciVI GTATCC 1 cut(s) 448
BclI TGATCA 1 cut(s) 676
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 611, 845
BfaI CTAG 2 cut(s) 303, 911
BfmI CTRYAG 1 cut(s) 413
BfuI GTATCC 1 cut(s) 448
BisI GCNGC 2 cut(s) 139, 156
BlsI GCNGC 2 cut(s) 140, 157
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 572
BmrFI CCNGG 1 cut(s) 29
BmrI ACTGGG 2 cut(s) 429, 468
BmsI GCATC 1 cut(s) 89
BmuI ACTGGG 2 cut(s) 429, 468
BpmI CTGGAG 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 639
BpuMI CCSGG 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 687
BsaJI CCNNGG 2 cut(s) 68, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 538, 841
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 435, 463
Bse8I GATNNNNATC 1 cut(s) 687
BseDI CCNNGG 2 cut(s) 68, 241
BseGI GGATG 2 cut(s) 19, 132
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 3 cut(s) 247, 538, 841
BseNI ACTGG 2 cut(s) 435, 463
BseRI GAGGAG 1 cut(s) 629
BseXI GCAGC 1 cut(s) 150
BshFI GGCC 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 3 cut(s) 29, 77, 103
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 3 cut(s) 247, 538, 841
BsmAI GTCTC 2 cut(s) 611, 845
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 1 cut(s) 505
Bsp1286I GDGCHC 2 cut(s) 36, 573
Bsp143I GATC 5 cut(s) 85, 417, 430, 676, 801
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 2 cut(s) 136, 156
BspANI GGCC 1 cut(s) 505
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 572
BspMAI CTGCAG 1 cut(s) 417
BspPI GGATC 2 cut(s) 93, 425
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 2 cut(s) 435, 463
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 68, 241
BssMI GATC 5 cut(s) 85, 417, 430, 676, 801
BssT1I CCWWGG 1 cut(s) 241
Bst4CI ACNGT 2 cut(s) 265, 919
BstC8I GCNNGC 1 cut(s) 339
BstDSI CCRYGG 2 cut(s) 68, 241
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 2 cut(s) 19, 132
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 5 cut(s) 88, 420, 433, 679, 804
BstMAI GTCTC 2 cut(s) 611, 845
BstMBI GATC 5 cut(s) 85, 417, 430, 676, 801
BstNSI RCATGY 1 cut(s) 741
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 413
BstV1I GCAGC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuI GTATCC 1 cut(s) 448
BsuRI GGCC 1 cut(s) 505
BtgI CCRYGG 2 cut(s) 68, 241
BtsCI GGATG 2 cut(s) 19, 132
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 172, 261, 442
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 123
CseI GACGC 1 cut(s) 246
Csp6I GTAC 2 cut(s) 915, 934
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 7 cut(s) 14, 224, 242, 278, 575, 738, 836
CviQI GTAC 2 cut(s) 915, 934
DpnI GATC 5 cut(s) 87, 419, 432, 678, 803
DpnII GATC 5 cut(s) 85, 417, 430, 676, 801
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 2 cut(s) 36, 573
Eco47I GGWCC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 36, 573
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 7 cut(s) 17, 227, 245, 281, 578, 741, 839
FaqI GGGAC 1 cut(s) 372
FatI CATG 7 cut(s) 13, 223, 241, 277, 574, 737, 835
FauNDI CATATG 1 cut(s) 880
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 2 cut(s) 139, 156
FokI GGATG 2 cut(s) 6, 119
FriOI GRGCYC 2 cut(s) 36, 573
Fsp4HI GCNGC 2 cut(s) 139, 156
FspBI CTAG 2 cut(s) 303, 911
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 139, 156
GsuI CTGGAG 1 cut(s) 557
HaeIII GGCC 1 cut(s) 505
HapII CCGG 3 cut(s) 29, 77, 103
HgaI GACGC 1 cut(s) 246
HhaI GCGC 1 cut(s) 189
Hin1II CATG 7 cut(s) 17, 227, 245, 281, 578, 741, 839
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 3 cut(s) 94, 308, 491
HpaII CCGG 3 cut(s) 29, 77, 103
HphI GGTGA 1 cut(s) 941
Hpy166II GTNNAC 6 cut(s) 261, 440, 517, 778, 922, 936
Hpy188I TCNGA 2 cut(s) 90, 626
Hpy188III TCNNGA 4 cut(s) 14, 536, 680, 698
Hpy8I GTNNAC 6 cut(s) 261, 440, 517, 778, 922, 936
HpyAV CCTTC 6 cut(s) 153, 169, 344, 542, 814, 881
HpyCH4III ACNGT 2 cut(s) 265, 919
HpyCH4IV ACGT 2 cut(s) 606, 900
HpyCH4V TGCA 6 cut(s) 114, 177, 232, 341, 415, 737
HpySE526I ACGT 2 cut(s) 606, 900
Hsp92II CATG 7 cut(s) 17, 227, 245, 281, 578, 741, 839
HspAI GCGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 5 cut(s) 85, 417, 430, 676, 801
LmnI GCTCC 3 cut(s) 31, 39, 576
LpnPI CCDG 8 cut(s) 42, 90, 116, 444, 448, 521, 779, 912
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 89
MaeI CTAG 2 cut(s) 303, 911
MaeII ACGT 2 cut(s) 606, 900
MalI GATC 5 cut(s) 87, 419, 432, 678, 803
MboI GATC 5 cut(s) 85, 417, 430, 676, 801
MboII GAAGA 1 cut(s) 486
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 36, 573
MluCI AATT 1 cut(s) 449
MlyI GAGTC 2 cut(s) 88, 317
MmeI TCCRAC 1 cut(s) 849
MnlI CCTC 8 cut(s) 76, 136, 140, 401, 495, 532, 607, 742
MroXI GAANNNNTTC 1 cut(s) 473
MseI TTAA 3 cut(s) 291, 846, 943
MslI CAYNNNNRTG 2 cut(s) 330, 927
MspI CCGG 3 cut(s) 29, 77, 103
MspR9I CCNGG 1 cut(s) 29
NciI CCSGG 1 cut(s) 29
NcoI CCATGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 880
NdeII GATC 5 cut(s) 85, 417, 430, 676, 801
NlaIII CATG 7 cut(s) 17, 227, 245, 281, 578, 741, 839
NlaIV GGNNCC 1 cut(s) 572
NspI RCATGY 1 cut(s) 741
OliI CACNNNNGTG 1 cut(s) 927
PagI TCATGA 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 491
PflMI CCANNNNNTGG 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 27
PkrI GCNGC 2 cut(s) 140, 157
PleI GAGTC 2 cut(s) 88, 316
PpsI GAGTC 2 cut(s) 88, 316
Psp124BI GAGCTC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 572
PspPI GGNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 417
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 2 cut(s) 916, 935
RsaNI GTAC 2 cut(s) 915, 934
RseI CAYNNNNRTG 2 cut(s) 330, 927
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 291, 846, 943
SatI GCNGC 2 cut(s) 139, 156
Sau3AI GATC 5 cut(s) 85, 417, 430, 676, 801
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 2 cut(s) 88, 317
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 2 cut(s) 36, 573
SfaNI GCATC 1 cut(s) 89
SfcI CTRYAG 1 cut(s) 413
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 2 cut(s) 330, 927
SmlI CTYRAG 1 cut(s) 654
SmoI CTYRAG 1 cut(s) 654
Sse9I AATT 1 cut(s) 449
SsiI CCGC 2 cut(s) 136, 156
SspI AATATT 1 cut(s) 371
SspMI CTAG 2 cut(s) 303, 911
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 265, 919
TaiI ACGT 2 cut(s) 609, 903
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 449
TatI WGTACW 1 cut(s) 933
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 3 cut(s) 291, 846, 943
Tru9I TTAA 3 cut(s) 291, 846, 943
TscAI CASTG 3 cut(s) 179, 268, 442
TseI GCWGC 1 cut(s) 138
TspRI CASTG 3 cut(s) 179, 268, 442
Van91I CCANNNNNTGG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 123
XagI CCTNNNNNAGG 1 cut(s) 536
XceI RCATGY 1 cut(s) 741
XmiI GTMKAC 1 cut(s) 516
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 2 cut(s) 303, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.