RLG00000024159

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000289
Physical Location & Seq
Reverse (-)
32640237 .. 32640938
702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024159

Sequence Viewer

Length: 675 bp
ATGGAAAATGCTGAAGATGATGTTCCAAAGCTATCGAGCGAAATCATATGCTCGGAAATACTCCCAAGGCTACATGCAAAGTCTCTGATGCGCTTTAGGTGTGTTTGCACGTCATGGTTTGATTTCCTCACAAGCAACCCCTTATTCCAGAGCATCCACCTGAAGTATCACCCCCACAACACTCACATCCTTCTAGATGTCCGTGACTTTTTCTATTCTGACCAAAAAGAAGGCTCAAAGCACTACTTCCTCTTCGTCAAAGCCAGCCAAAAAGGAATTACTCCATCACAAGTCACTGACTGTGTAAAAGTTCCCCAGAATCTCGTGTTGGGTTATTGTGGTCAATATGGTGTTCCCATTTTCGTAGTTAATCCCTTCACCGGAAAGTCTATTTCCATTCCGTATCCTGCTGAACATAATATCTGGTCGATAAGTAGTGAAAAAAAGTATTTTGGGTGTAGTCCTCGCACAAACGAGTATAAGATTATCCTAGCTAAAGAATTTCAGCTTGGGGAAGCTTATCCTCCATCAACCACCTTATTTATGTTAAAGGTTTTCACACTGGGTACGGGTTTATGGAGGAACTTAGAGGTAGACTGGGATGCACTCTCATTGGATCCTCTTCAATCTTGGGACTTCCATAGTACTAAAAGCGTATGTGTCCATGGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

225

Amino Acids

25.68

Weight (kDa)

6.74

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 70 - 201 5.8e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 594
AclWI GGATC 2 cut(s) 611, 624
AcsI RAATTY 1 cut(s) 500
AcuI CTGAAG 2 cut(s) 33, 182
AfaI GTAC 2 cut(s) 568, 646
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 1 cut(s) 626
AjiI CACGTC 1 cut(s) 111
AjuI GAANNNNNNNTTGG 4 cut(s) 311, 343, 492, 524
AluBI AGCT 4 cut(s) 31, 494, 508, 518
AluI AGCT 4 cut(s) 31, 494, 508, 518
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 2 cut(s) 611, 624
ApoI RAATTY 1 cut(s) 500
AspLEI GCGC 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 161, 370
BamHI GGATCC 1 cut(s) 616
BauI CACGAG 1 cut(s) 323
BccI CCATC 2 cut(s) 292, 535
BciVI GTATCC 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 2 cut(s) 194, 491
BfuI GTATCC 1 cut(s) 414
BmcAI AGTACT 1 cut(s) 646
BmgBI CACGTC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 618
BmrI ACTGGG 2 cut(s) 572, 607
BmsI GCATC 3 cut(s) 78, 162, 592
BmuI ACTGGG 2 cut(s) 572, 607
BsaJI CCNNGG 2 cut(s) 65, 664
BsaWI WCCGGW 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 2 cut(s) 567, 602
BseDI CCNNGG 2 cut(s) 65, 664
BseGI GGATG 3 cut(s) 153, 186, 607
BseLI CCNNNNNNNGG 1 cut(s) 380
BseNI ACTGG 2 cut(s) 567, 602
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 647
Bsp143I GATC 1 cut(s) 616
Bsp19I CCATGG 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 618
BspPI GGATC 2 cut(s) 611, 624
BsrI ACTGG 2 cut(s) 567, 602
BssECI CCNNGG 2 cut(s) 65, 664
BssMI GATC 1 cut(s) 616
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 2 cut(s) 65, 664
Bst2BI CACGAG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 2 cut(s) 257, 627
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 586
BstDSI CCRYGG 1 cut(s) 664
BstF5I GGATG 3 cut(s) 153, 186, 607
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 619
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 616
BstNSI RCATGY 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BsuI GTATCC 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 664
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 3 cut(s) 153, 186, 607
BtsIMutI CAGTG 2 cut(s) 294, 560
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 93
Csp6I GTAC 2 cut(s) 567, 645
CviAII CATG 3 cut(s) 74, 114, 665
CviJI RGCY 8 cut(s) 31, 70, 234, 263, 267, 494, 508, 518
CviKI_1 RGCY 8 cut(s) 31, 70, 234, 263, 267, 494, 508, 518
CviQI GTAC 2 cut(s) 567, 645
DdeI CTNAG 1 cut(s) 586
DpnI GATC 1 cut(s) 618
DpnII GATC 1 cut(s) 616
Eam1104I CTCTTC 2 cut(s) 257, 627
EarI CTCTTC 2 cut(s) 257, 627
Eco130I CCWWGG 2 cut(s) 65, 664
Eco57I CTGAAG 2 cut(s) 33, 182
EcoT14I CCWWGG 2 cut(s) 65, 664
ErhI CCWWGG 2 cut(s) 65, 664
FaeI CATG 3 cut(s) 77, 117, 668
FalI AAGNNNNNCTT 2 cut(s) 230, 262
FaqI GGGAC 1 cut(s) 647
FatI CATG 3 cut(s) 73, 113, 664
FauNDI CATATG 1 cut(s) 47
FblI GTMKAC 1 cut(s) 594
FokI GGATG 3 cut(s) 140, 173, 614
FspBI CTAG 2 cut(s) 194, 491
GlaI GCGC 1 cut(s) 92
HapII CCGG 1 cut(s) 381
HhaI GCGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 77, 117, 668
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 516
HinfI GANTC 1 cut(s) 319
HpaII CCGG 1 cut(s) 381
HphI GGTGA 2 cut(s) 161, 370
Hpy166II GTNNAC 1 cut(s) 595
Hpy188I TCNGA 3 cut(s) 55, 87, 220
Hpy188III TCNNGA 2 cut(s) 148, 194
Hpy8I GTNNAC 1 cut(s) 595
HpyAV CCTTC 3 cut(s) 200, 224, 385
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 77, 108, 605
HpyF3I CTNAG 1 cut(s) 586
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 3 cut(s) 77, 117, 668
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 616
LpnPI CCDG 9 cut(s) 161, 173, 277, 329, 394, 409, 420, 548, 583
LweI GCATC 3 cut(s) 78, 162, 592
MaeI CTAG 2 cut(s) 194, 491
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 203, 292
MalI GATC 1 cut(s) 618
MboI GATC 1 cut(s) 616
MboII GAAGA 3 cut(s) 26, 244, 614
MflI RGATCY 1 cut(s) 616
MluCI AATT 2 cut(s) 276, 500
MnlI CCTC 7 cut(s) 137, 260, 474, 534, 573, 583, 630
MseI TTAA 2 cut(s) 369, 548
MspI CCGG 1 cut(s) 381
NcoI CCATGG 1 cut(s) 664
NdeI CATATG 1 cut(s) 47
NdeII GATC 1 cut(s) 616
NlaIII CATG 3 cut(s) 77, 117, 668
NlaIV GGNNCC 1 cut(s) 618
NmuCI GTSAC 2 cut(s) 203, 292
NspI RCATGY 1 cut(s) 77
PfeI GAWTC 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 618
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 2 cut(s) 568, 646
RsaNI GTAC 2 cut(s) 567, 645
SaqAI TTAA 2 cut(s) 369, 548
Sau3AI GATC 1 cut(s) 616
ScaI AGTACT 1 cut(s) 646
SfaNI GCATC 3 cut(s) 78, 162, 592
Sse9I AATT 2 cut(s) 276, 500
SspMI CTAG 2 cut(s) 194, 491
StyI CCWWGG 2 cut(s) 65, 664
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 1 cut(s) 113
TaqI TCGA 2 cut(s) 35, 428
TasI AATT 2 cut(s) 276, 500
TatI WGTACW 1 cut(s) 644
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 369, 548
Tru9I TTAA 2 cut(s) 369, 548
TscAI CASTG 2 cut(s) 301, 567
TseFI GTSAC 2 cut(s) 203, 292
Tsp45I GTSAC 2 cut(s) 203, 292
TspGWI ACGGA 2 cut(s) 191, 390
TspRI CASTG 2 cut(s) 301, 567
XapI RAATTY 1 cut(s) 500
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 594
XspI CTAG 2 cut(s) 194, 491
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.