Rorug04G0015700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000289
Physical Location & Seq
Forward (+)
2432615 .. 2433328
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0015700.1

Sequence Viewer

Length: 357 bp
ATGAGAATGAAGCCGTTTAAGGATGAACTTGCTACATCTGAGGTAGCTACATCTGAGATTGAGCATTTGGTTGTTTTTGCAATGTACTTGAGAAATGATTTTGAGGCTGAGCTCAAAGAGGCTGTTAATGGACTAAAATCAACAACTGAACAACCTAGGGAGGATGGTTGTGGCAAGGATCTGATAACGAAGTTCGCAATGCAGCTTGAGTTACAAGCTGCAGTTCAGAGAAATCAGGATGAGCTTAAAGAGGTTGTTAAAAAAGTAGGAATAAGGAAGGAATGGGTGGAGAATACGTTGAAGCAGATTGAGGAACTGGAAACAAGGGCTGAATGGGTGGAGAATGCGTGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

118

Amino Acids

13.63

Weight (kDa)

4.86

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 186
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 5 cut(s) 47, 112, 205, 218, 244
AluI AGCT 5 cut(s) 47, 112, 205, 218, 244
Alw21I GWGCWC 1 cut(s) 114
AlwI GGATC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 202, 218
AspA2I CCTAGG 1 cut(s) 155
AvrII CCTAGG 1 cut(s) 155
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 205, 214
BccI CCATC 1 cut(s) 158
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 2 cut(s) 203, 219
BlnI CCTAGG 1 cut(s) 155
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 2 cut(s) 204, 220
Bpu1102I GCTNAGC 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 109, 227
BsaJI CCNNGG 1 cut(s) 155
BsaXI ACNNNNNCTCC 3 cut(s) 281, 311, 332
Bse1I ACTGG 1 cut(s) 321
Bse3DI GCAATG 2 cut(s) 87, 204
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 3 cut(s) 28, 169, 244
BseMI GCAATG 2 cut(s) 87, 204
BseMII CTCAG 3 cut(s) 30, 45, 99
BseNI ACTGG 1 cut(s) 321
BseXI GCAGC 2 cut(s) 205, 214
BsiHKAI GWGCWC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 178
Bsp1720I GCTNAGC 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 31, 46, 100
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 186
BsrDI GCAATG 2 cut(s) 87, 204
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 39, 54, 108
BstF5I GGATG 3 cut(s) 28, 169, 244
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 205, 214
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtsCI GGATG 3 cut(s) 28, 169, 244
Cac8I GCNNGC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 85
CviJI RGCY 9 cut(s) 13, 47, 107, 112, 122, 205, 218, 244, 329
CviKI_1 RGCY 9 cut(s) 13, 47, 107, 112, 122, 205, 218, 244, 329
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 3 cut(s) 39, 54, 108
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 203, 219
FokI GGATG 3 cut(s) 35, 176, 251
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 203, 219
FspBI CTAG 1 cut(s) 156
GluI GCNGC 2 cut(s) 203, 219
Hpy188I TCNGA 5 cut(s) 40, 55, 183, 228, 356
Hpy188III TCNNGA 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 4 cut(s) 80, 202, 221, 351
HpyF3I CTNAG 3 cut(s) 39, 54, 108
HpySE526I ACGT 1 cut(s) 296
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 2 cut(s) 221, 302
Lsp1109I GCAGC 2 cut(s) 205, 214
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 210
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 114
MnlI CCTC 6 cut(s) 34, 97, 112, 154, 244, 304
MseI TTAA 4 cut(s) 18, 126, 246, 258
Mva1269I GAATGC 1 cut(s) 349
NdeII GATC 1 cut(s) 178
PctI GAATGC 1 cut(s) 349
PkrI GCNGC 2 cut(s) 204, 220
Psp124BI GAGCTC 1 cut(s) 114
PstI CTGCAG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 4 cut(s) 18, 126, 246, 258
SatI GCNGC 2 cut(s) 203, 219
Sau3AI GATC 1 cut(s) 178
SduI GDGCHC 1 cut(s) 114
SetI ASST 9 cut(s) 45, 49, 114, 157, 207, 220, 246, 255, 299
SfcI CTRYAG 1 cut(s) 219
SgeI CNNG 9 cut(s) 41, 100, 168, 187, 218, 227, 248, 329, 336
SmlI CTYRAG 2 cut(s) 88, 206
SmoI CTYRAG 2 cut(s) 88, 206
SspMI CTAG 1 cut(s) 156
SstI GAGCTC 1 cut(s) 114
StyI CCWWGG 1 cut(s) 155
TaiI ACGT 1 cut(s) 299
TatI WGTACW 1 cut(s) 84
Tru1I TTAA 4 cut(s) 18, 126, 246, 258
Tru9I TTAA 4 cut(s) 18, 126, 246, 258
TseI GCWGC 2 cut(s) 202, 218
TspDTI ATGAA 2 cut(s) 23, 39
XmaJI CCTAGG 1 cut(s) 155
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.