RchiOBHm_Chr2g0138411

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000289
Physical Location & Seq
Forward (+)
56116080 .. 56117246
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50910

Sequence Viewer

Length: 1167 bp
ATGCCTATAGAATATTACAACATTGCAAAGCTTCCCATCGACATCATATTGTCTGAGATATTCTCAAGGTTGCCGGTCAAGTCCTTGATACGGTTTAGGTGCGTATGCAAATCTTGGTCCTCCCTCATCCGCCATCCTTTCTTTGTCAGAACCTACCAAAAGTTGCAGACTCAATCGTGCCATAACCACCACCTCCTTCTCAGATTTTGGAACCCAGTCACGAGTCGGTGGCACTTGCTCTCCGCACAATTCAACCAAGAAGGGAGTATTAGCACCACCGACATCCTTCTAAGCCATCATGGACGGTTAATATGCTCCAATATGGTAAGTATCAATGGCTTAATCTGTGTTTATCGTCTTCATCATCGTGCATCTACTGAGCTGGACAAGCCCGTTATATTTAACCTCTGCACCCGAGAGTCCATCACTCTTCCCCATGCCTTAAATACTAGCCGGAGCCACTACTTGGTTCATTCGACTTGGATTGGGTTCAGTCCTCAGACAAACGAGAATAAGGTTCTCCAAGTACTAGTGCGGCACCATCACACCAACGAAAGCAGTTTCATATTCAAGATTTTCACTCTTGGTGGTACAAGTAGTTCATGGAGGCATCTAGAGATAGAAGACAAAGACTTCGATGATCTTGCTCTTGATTATCAAAATTTACTGTTTCACCAGAGATCTGTGTTCCTCCACGGGGCCAGACATTGGCTGGAAACGAATATTAAGGATGAACTTGTTATATTGGTTTTTGACTTTGAACAAGAGCGATTCAGAGTAATCCCATTGCCTCAAGAATATCATAAAGATCGCGTTGGTGCTTCTCCTTTTGTGGAAATGATTGAAGTGAATGAATGTGTTGCAATAAATGATCCCGACTTCTCATCTGAAGGAAATGTTATAAGTTTATGGATTTTGAAGGATTACCAACATCTGGTGTGGGTTAAAGAGAGTATCATCTTTCCCACTAAATGGAAGAAGATGGGATTCCCTATTCCTAGGTGCTCAATCTACACAGGCGAGCTCCTGCTTAGAGGGCCATGTGGTACATGCGAGGTGCTTCTTTATAACCTAAACAATAAGCGTTTTACGACGATTCAATATTCTATGCCACAAATCTTGGGTAGTTATCATGAAAGCATTATTCCCCTAGCCGCTTCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

388

Amino Acids

45.23

Weight (kDa)

8.04

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 9 - 48 5.5e-08 F-box-like
F-box PF00646 10 - 48 2.5e-10 F-box domain
FBA_3 PF08268 76 - 368 6.7e-27 F-box associated beta propeller domain
FBA_1 PF07734 78 - 310 5.4e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 902, 1068
AccB1I GGYRCC 1 cut(s) 537
AccB7I CCANNNNNTGG 4 cut(s) 466, 708, 934, 972
AccII CGCG 1 cut(s) 813
AciI CCGC 4 cut(s) 130, 243, 535, 1155
AclWI GGATC 1 cut(s) 866
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 1 cut(s) 909
AfaI GTAC 3 cut(s) 528, 592, 1048
AfiI CCNNNNNNNGG 6 cut(s) 90, 466, 697, 708, 934, 972
AgsI TTSAA 6 cut(s) 253, 571, 761, 845, 919, 1100
AhlI ACTAGT 1 cut(s) 529
AluBI AGCT 3 cut(s) 31, 382, 1024
AluI AGCT 3 cut(s) 31, 382, 1024
Alw21I GWGCWC 2 cut(s) 1007, 1026
AlwI GGATC 1 cut(s) 866
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 2 cut(s) 699, 1037
ApoI RAATTY 1 cut(s) 661
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AspA2I CCTAGG 1 cut(s) 998
AspS9I GGNCC 3 cut(s) 117, 699, 1037
AsuHPI GGTGA 1 cut(s) 665
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 1 cut(s) 117
AvrII CCTAGG 1 cut(s) 998
BanI GGYRCC 1 cut(s) 537
BanII GRGCYC 1 cut(s) 1026
BauI CACGAG 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 350, 630
Bbv12I GWGCWC 2 cut(s) 1007, 1026
BccI CCATC 6 cut(s) 44, 141, 303, 431, 549, 976
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BcuI ACTAGT 1 cut(s) 529
BfaI CTAG 5 cut(s) 450, 530, 614, 999, 1151
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 680
BisI GCNGC 2 cut(s) 536, 1155
BlnI CCTAGG 1 cut(s) 998
BlsI GCNGC 2 cut(s) 537, 1156
BmcAI AGTACT 1 cut(s) 528
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 3 cut(s) 117, 699, 1037
BmiI GGNNCC 4 cut(s) 212, 458, 539, 700
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 2 cut(s) 380, 619
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 2 cut(s) 350, 630
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuEI CTTGAG 2 cut(s) 49, 777
BsaJI CCNNGG 2 cut(s) 694, 998
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 6 cut(s) 90, 466, 697, 708, 934, 972
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 2 cut(s) 21, 785
BseDI CCNNGG 2 cut(s) 694, 998
BseGI GGATG 4 cut(s) 126, 133, 282, 736
BseLI CCNNNNNNNGG 6 cut(s) 90, 466, 697, 708, 934, 972
BseMI GCAATG 2 cut(s) 21, 785
BseMII CTCAG 4 cut(s) 45, 214, 369, 512
BseNI ACTGG 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 394
Bsh1236I CGCG 1 cut(s) 813
BshFI GGCC 2 cut(s) 701, 1039
BshNI GGYRCC 1 cut(s) 537
BsiHKAI GWGCWC 2 cut(s) 1007, 1026
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 2 cut(s) 74, 454
BslI CCNNNNNNNGG 6 cut(s) 90, 466, 697, 708, 934, 972
BsnI GGCC 2 cut(s) 701, 1039
BsoBI CYCGRG 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 1007, 1026
Bsp143I GATC 4 cut(s) 640, 680, 808, 871
BspACI CCGC 4 cut(s) 130, 243, 535, 1155
BspANI GGCC 2 cut(s) 701, 1039
BspCNI CTCAG 4 cut(s) 46, 213, 370, 511
BspFNI CGCG 1 cut(s) 813
BspHI TCATGA 1 cut(s) 1132
BspLI GGNNCC 4 cut(s) 212, 458, 539, 700
BspPI GGATC 1 cut(s) 866
BspT107I GGYRCC 1 cut(s) 537
BsrDI GCAATG 2 cut(s) 21, 785
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 694, 998
BssMI GATC 4 cut(s) 640, 680, 808, 871
BssSI CACGAG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 998
Bst2BI CACGAG 1 cut(s) 220
Bst4CI ACNGT 3 cut(s) 93, 306, 669
Bst6I CTCTTC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 1022
BstDEI CTNAG 6 cut(s) 54, 200, 290, 378, 498, 1031
BstDSI CCRYGG 1 cut(s) 694
BstF5I GGATG 4 cut(s) 126, 133, 282, 736
BstFNI CGCG 1 cut(s) 813
BstKTI GATC 4 cut(s) 643, 683, 811, 874
BstMBI GATC 4 cut(s) 640, 680, 808, 871
BstMWI GCNNNNNNNGC 2 cut(s) 388, 1036
BstNSI RCATGY 1 cut(s) 1053
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 1 cut(s) 813
BstV2I GAAGAC 2 cut(s) 350, 630
BstX2I RGATCY 1 cut(s) 680
BstYI RGATCY 1 cut(s) 680
BsuRI GGCC 2 cut(s) 701, 1039
BtgI CCRYGG 1 cut(s) 694
BtsCI GGATG 4 cut(s) 126, 133, 282, 736
Cac8I GCNNGC 1 cut(s) 1022
CciI TCATGA 1 cut(s) 1132
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 3 cut(s) 117, 699, 1037
Csp6I GTAC 3 cut(s) 527, 591, 1047
CspCI CAANNNNNGTGG 2 cut(s) 1101, 1136
CviAII CATG 7 cut(s) 299, 437, 603, 1041, 1050, 1133, 1164
CviQI GTAC 3 cut(s) 527, 591, 1047
DdeI CTNAG 6 cut(s) 54, 200, 290, 378, 498, 1031
DpnI GATC 4 cut(s) 642, 682, 810, 873
DpnII GATC 4 cut(s) 640, 680, 808, 871
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 1024
Eco130I CCWWGG 1 cut(s) 998
Eco24I GRGCYC 1 cut(s) 1026
Eco47I GGWCC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 1024
Eco57I CTGAAG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 1024
EcoT14I CCWWGG 1 cut(s) 998
EcoT38I GRGCYC 1 cut(s) 1026
ErhI CCWWGG 1 cut(s) 998
FaeI CATG 7 cut(s) 302, 440, 606, 1044, 1053, 1136, 1167
FatI CATG 7 cut(s) 298, 436, 602, 1040, 1049, 1132, 1163
Fnu4HI GCNGC 2 cut(s) 536, 1155
FokI GGATG 4 cut(s) 113, 120, 269, 743
FriOI GRGCYC 1 cut(s) 1026
Fsp4HI GCNGC 2 cut(s) 536, 1155
FspBI CTAG 5 cut(s) 450, 530, 614, 999, 1151
GluI GCNGC 2 cut(s) 536, 1155
HaeIII GGCC 2 cut(s) 701, 1039
HapII CCGG 2 cut(s) 74, 454
Hin1II CATG 7 cut(s) 302, 440, 606, 1044, 1053, 1136, 1167
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 6 cut(s) 169, 223, 419, 771, 987, 1096
HpaII CCGG 2 cut(s) 74, 454
HphI GGTGA 1 cut(s) 665
Hpy188I TCNGA 6 cut(s) 55, 149, 203, 501, 776, 889
Hpy188III TCNNGA 7 cut(s) 220, 571, 614, 650, 794, 875, 1133
Hpy99I CGWCG 1 cut(s) 1096
HpyAV CCTTC 5 cut(s) 206, 254, 296, 884, 913
HpyCH4III ACNGT 3 cut(s) 93, 306, 669
HpyCH4V TGCA 6 cut(s) 26, 108, 166, 371, 411, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 388, 1036
HpyF3I CTNAG 6 cut(s) 54, 200, 290, 378, 498, 1031
Hsp92II CATG 7 cut(s) 302, 440, 606, 1044, 1053, 1136, 1167
Kzo9I GATC 4 cut(s) 640, 680, 808, 871
LmnI GCTCC 3 cut(s) 320, 456, 1029
LweI GCATC 2 cut(s) 380, 619
MaeI CTAG 5 cut(s) 450, 530, 614, 999, 1151
MaeIII GTNAC 1 cut(s) 217
MalI GATC 4 cut(s) 642, 682, 810, 873
MboI GATC 4 cut(s) 640, 680, 808, 871
MboII GAAGA 5 cut(s) 350, 422, 635, 988, 991
MflI RGATCY 1 cut(s) 680
MhlI GDGCHC 2 cut(s) 1007, 1026
MluCI AATT 2 cut(s) 248, 661
MlyI GAGTC 3 cut(s) 163, 232, 428
MseI TTAA 6 cut(s) 308, 341, 402, 443, 726, 945
MslI CAYNNNNRTG 1 cut(s) 366
MspI CCGG 2 cut(s) 74, 454
MvnI CGCG 1 cut(s) 813
MwoI GCNNNNNNNGC 2 cut(s) 388, 1036
NdeII GATC 4 cut(s) 640, 680, 808, 871
NlaIII CATG 7 cut(s) 302, 440, 606, 1044, 1053, 1136, 1167
NlaIV GGNNCC 4 cut(s) 212, 458, 539, 700
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 1053
PagI TCATGA 1 cut(s) 1132
PfeI GAWTC 3 cut(s) 771, 987, 1096
PflMI CCANNNNNTGG 4 cut(s) 466, 708, 934, 972
PkrI GCNGC 2 cut(s) 537, 1156
PleI GAGTC 3 cut(s) 163, 231, 427
PpsI GAGTC 3 cut(s) 163, 231, 427
PsiI TTATAA 2 cut(s) 902, 1068
Psp124BI GAGCTC 1 cut(s) 1026
PspN4I GGNNCC 4 cut(s) 212, 458, 539, 700
PspPI GGNCC 3 cut(s) 117, 699, 1037
PsrI GAACNNNNNNTAC 2 cut(s) 583, 615
PsuI RGATCY 1 cut(s) 680
RsaI GTAC 3 cut(s) 528, 592, 1048
RsaNI GTAC 3 cut(s) 527, 591, 1047
RseI CAYNNNNRTG 1 cut(s) 366
SacI GAGCTC 1 cut(s) 1026
SaqAI TTAA 6 cut(s) 308, 341, 402, 443, 726, 945
SatI GCNGC 2 cut(s) 536, 1155
Sau3AI GATC 4 cut(s) 640, 680, 808, 871
Sau96I GGNCC 3 cut(s) 117, 699, 1037
ScaI AGTACT 1 cut(s) 528
SchI GAGTC 3 cut(s) 163, 232, 428
SduI GDGCHC 2 cut(s) 1007, 1026
SfaNI GCATC 2 cut(s) 380, 619
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 2 cut(s) 64, 792
SmoI CTYRAG 2 cut(s) 64, 792
SpeI ACTAGT 1 cut(s) 529
Sse9I AATT 2 cut(s) 248, 661
SsiI CCGC 4 cut(s) 130, 243, 535, 1155
SspI AATATT 3 cut(s) 14, 724, 1103
SspMI CTAG 5 cut(s) 450, 530, 614, 999, 1151
SstI GAGCTC 1 cut(s) 1026
StyI CCWWGG 1 cut(s) 998
TaaI ACNGT 3 cut(s) 93, 306, 669
TaqI TCGA 3 cut(s) 39, 476, 636
TasI AATT 2 cut(s) 248, 661
TatI WGTACW 1 cut(s) 526
TauI GCSGC 2 cut(s) 538, 1157
TfiI GAWTC 3 cut(s) 771, 987, 1096
Tru1I TTAA 6 cut(s) 308, 341, 402, 443, 726, 945
Tru9I TTAA 6 cut(s) 308, 341, 402, 443, 726, 945
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 7 cut(s) 350, 461, 553, 591, 747, 867, 1149
Van91I CCANNNNNTGG 4 cut(s) 466, 708, 934, 972
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 661
XbaI TCTAGA 1 cut(s) 613
XceI RCATGY 1 cut(s) 1053
XcmI CCANNNNNNNNNTGG 1 cut(s) 709
XmaJI CCTAGG 1 cut(s) 998
XspI CTAG 5 cut(s) 450, 530, 614, 999, 1151
ZrmI AGTACT 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.