Rh4CG371900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000289
Physical Location & Seq
Forward (+)
62647877 .. 62649390
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG371900.1

Sequence Viewer

Length: 1131 bp
ATGGAAGCTGACTCAGTGATCAGCGGAGGGCTCCCATCCGAAATCATATGCTTCCAGATACTCCCAAGGCTACCGACCAAGTTCGTGATCCGTTGCAGATGCGTCTGCAAATCATGGTCCTCTCTCACCCGCAACCCTTCTTTTCTCACCGTTCACCGTAGCTTCCGGTGCAGCCCTTCCACTCACCTCCTCTTCACCACGTCGGACGAGACCACAACCACACTTCAACACTTTCACTCTGTGAAACTCAACCAAGAAGAAGGAGAAAAGAATATTATTAATCCAACAACAGACCTCTTTAGCCTTCCAGCACCGTCCTATTCCTTTCTCGGCGGCACACATAGTATCAACGGCTTAACGATTTTAGCCGATCAACTTAATGCCAAAACGGTTTATGTGTTCAATCCCTGTACTGAACAGATTATAACTCTTCCCCATACCAGCCTTGTAGCCGAATTGTTTACACACCATCTCGGATTCAGTGCTGTTACAAACGAGTATAAGGTTTTCCAAGTGCATTGGTCTGGTAATGAGGATTACCCGAATTATGTGACTTCTCTGAGGTTCAAAATTTTCACTTTGGGTACAACTACATGGAGGCACATAGAGTTGGACTTTCCTTTTGATCCTGAAAGGCTAGACTTTGCTAAGAAAAGTGTATGCCTCCATGGAGGCATACATTGGATGCATATGAATCAGAAGATTATAGTTGCATTTGATGTTGGAGCCGAGAGATTCAGAGCCAACATCCCACTTCCCGGAGATTGTGACTCCGGGAATATTGTTGAAGTGGGTGGATGTGTGGCTGTGTATGATGACACATCATTGTTTCAACAGGACATGATATTATTGTGGATTTTGGAGGATTACCAAAATCATGTGTGGGTTAAGAAGAATATCATATTTACCTCGAGTTGGGAAAAATTAGGGTGCCCTATTCCGTTGGGTACAATCCACACAGGTGAGCTCCTGCTCAAGCCTACCTTACGGGACTCGGCCAATGTCAGTGTTCATCTTTACAATATAGAGAGCGATAGCTTTCGGAAATGTAAGATTAGTTTGCCGGTGAAGATTGGTCTATGGAGCTTGCTTACTAGTTATGATGAAAGTGTGATCACCTTGAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

376

Amino Acids

42.5

Weight (kDa)

6.23

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 11 - 47 2.8e-06 F-box-like
FBA_3 PF08268 63 - 353 3.1e-38 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 115 - 256 5.9e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 116 - 309 8.8e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 930
AciI CCGC 3 cut(s) 24, 130, 333
AclWI GGATC 2 cut(s) 82, 620
AcoI YGGCCR 1 cut(s) 996
AcsI RAATTY 1 cut(s) 570
AdeI CACNNNGTG 1 cut(s) 241
AfaI GTAC 3 cut(s) 412, 586, 949
AfiI CCNNNNNNNGG 2 cut(s) 758, 915
AgsI TTSAA 5 cut(s) 227, 403, 568, 788, 833
AhlI ACTAGT 1 cut(s) 1094
AjiI CACGTC 1 cut(s) 201
AleI CACNNNNGTG 1 cut(s) 960
AluBI AGCT 5 cut(s) 8, 162, 967, 1038, 1086
AluI AGCT 5 cut(s) 8, 162, 967, 1038, 1086
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 2 cut(s) 82, 620
Ama87I CYCGRG 1 cut(s) 910
AoxI GGCC 1 cut(s) 996
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 570
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
AseI ATTAAT 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 2 cut(s) 759, 775
AsuHPI GGTGA 8 cut(s) 118, 139, 146, 176, 187, 974, 1078, 1108
AvaI CYCGRG 1 cut(s) 910
AvaII GGWCC 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 935
BanI GGYRCC 1 cut(s) 930
BanII GRGCYC 2 cut(s) 33, 969
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 1 cut(s) 183
BccI CCATC 2 cut(s) 43, 477
BceAI ACGGC 1 cut(s) 367
BclI TGATCA 2 cut(s) 18, 1113
BcnI CCSGG 2 cut(s) 759, 775
BcoDI GTCTC 1 cut(s) 203
BcuI ACTAGT 1 cut(s) 1094
BfaI CTAG 2 cut(s) 638, 1095
BisI GCNGC 2 cut(s) 172, 334
BlsI GCNGC 2 cut(s) 173, 335
Bme1390I CCNGG 2 cut(s) 759, 775
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 910
BmgBI CACGTC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 3 cut(s) 32, 727, 932
BmrFI CCNGG 2 cut(s) 759, 775
BmsI GCATC 2 cut(s) 89, 675
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 2 cut(s) 759, 775
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 65, 667
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 758, 915
Bse118I RCCGGY 1 cut(s) 1063
BseDI CCNNGG 2 cut(s) 65, 667
BseGI GGATG 4 cut(s) 35, 690, 747, 803
BseLI CCNNNNNNNGG 2 cut(s) 758, 915
BseMII CTCAG 2 cut(s) 27, 551
BseRI GAGGAG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 935
BseXI GCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 190
BshFI GGCC 1 cut(s) 998
BshNI GGYRCC 1 cut(s) 930
BsiHKAI GWGCWC 1 cut(s) 969
BsiHKCI CYCGRG 1 cut(s) 910
BsiSI CCGG 4 cut(s) 166, 759, 774, 1064
BslFI GGGAC 1 cut(s) 1004
BslI CCNNNNNNNGG 2 cut(s) 758, 915
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 1004
BsnI GGCC 1 cut(s) 998
Bso31I GGTCTC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 910
Bsp1286I GDGCHC 3 cut(s) 33, 935, 969
Bsp143I GATC 6 cut(s) 18, 87, 370, 625, 1113, 1124
Bsp19I CCATGG 1 cut(s) 667
BspACI CCGC 3 cut(s) 24, 130, 333
BspANI GGCC 1 cut(s) 998
BspCNI CTCAG 2 cut(s) 26, 552
BspHI TCATGA 1 cut(s) 1127
BspLI GGNNCC 3 cut(s) 32, 727, 932
BspPI GGATC 2 cut(s) 82, 620
BspT107I GGYRCC 1 cut(s) 930
BspTNI GGTCTC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 1063
BssAI RCCGGY 1 cut(s) 1063
BssECI CCNNGG 2 cut(s) 65, 667
BssMI GATC 6 cut(s) 18, 87, 370, 625, 1113, 1124
BssT1I CCWWGG 2 cut(s) 65, 667
Bst4CI ACNGT 4 cut(s) 151, 158, 315, 391
Bst6I CTCTTC 2 cut(s) 197, 435
BstC8I GCNNGC 1 cut(s) 1088
BstDEI CTNAG 3 cut(s) 13, 560, 648
BstDSI CCRYGG 1 cut(s) 667
BstF5I GGATG 4 cut(s) 35, 690, 747, 803
BstKTI GATC 6 cut(s) 21, 90, 373, 628, 1116, 1127
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 6 cut(s) 18, 87, 370, 625, 1113, 1124
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 757, 773
BstSLI GKGCMC 1 cut(s) 935
BstV1I GCAGC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 998
BtgI CCRYGG 1 cut(s) 667
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 4 cut(s) 35, 690, 747, 803
BtsIMutI CAGTG 3 cut(s) 21, 487, 1012
Cac8I GCNNGC 1 cut(s) 1088
CciI TCATGA 1 cut(s) 1127
Cfr10I RCCGGY 1 cut(s) 1063
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 91
Csp6I GTAC 3 cut(s) 411, 585, 948
CviAII CATG 6 cut(s) 114, 594, 668, 841, 878, 1128
CviQI GTAC 3 cut(s) 411, 585, 948
DdeI CTNAG 3 cut(s) 13, 560, 648
DpnI GATC 6 cut(s) 20, 89, 372, 627, 1115, 1126
DpnII GATC 6 cut(s) 18, 87, 370, 625, 1113, 1124
DraIII CACNNNGTG 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 996
Eam1104I CTCTTC 2 cut(s) 197, 435
EarI CTCTTC 2 cut(s) 197, 435
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 2 cut(s) 65, 667
Eco24I GRGCYC 2 cut(s) 33, 969
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 967
Eco88I CYCGRG 1 cut(s) 910
EcoICRI GAGCTC 1 cut(s) 967
EcoT14I CCWWGG 2 cut(s) 65, 667
EcoT22I ATGCAT 1 cut(s) 690
EcoT38I GRGCYC 2 cut(s) 33, 969
ErhI CCWWGG 2 cut(s) 65, 667
FaeI CATG 6 cut(s) 117, 597, 671, 844, 881, 1131
FalI AAGNNNNNCTT 2 cut(s) 968, 1000
FaqI GGGAC 1 cut(s) 1004
FatI CATG 6 cut(s) 113, 593, 667, 840, 877, 1127
FauI CCCGC 1 cut(s) 137
FauNDI CATATG 2 cut(s) 47, 690
FbaI TGATCA 2 cut(s) 18, 1113
Fnu4HI GCNGC 2 cut(s) 172, 334
FokI GGATG 4 cut(s) 22, 697, 734, 810
FriOI GRGCYC 2 cut(s) 33, 969
Fsp4HI GCNGC 2 cut(s) 172, 334
FspBI CTAG 2 cut(s) 638, 1095
GluI GCNGC 2 cut(s) 172, 334
HaeIII GGCC 1 cut(s) 998
HapII CCGG 4 cut(s) 166, 759, 774, 1064
HgaI GACGC 1 cut(s) 91
Hin1II CATG 6 cut(s) 117, 597, 671, 844, 881, 1131
HinfI GANTC 6 cut(s) 11, 477, 694, 735, 770, 992
HpaII CCGG 4 cut(s) 166, 759, 774, 1064
HphI GGTGA 8 cut(s) 118, 139, 146, 176, 187, 974, 1078, 1108
Hpy166II GTNNAC 2 cut(s) 154, 462
Hpy188I TCNGA 7 cut(s) 40, 205, 476, 561, 699, 740, 1044
Hpy188III TCNNGA 4 cut(s) 55, 85, 629, 1128
Hpy8I GTNNAC 2 cut(s) 154, 462
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 4 cut(s) 147, 186, 254, 314
HpyCH4III ACNGT 4 cut(s) 151, 158, 315, 391
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 6 cut(s) 96, 108, 171, 517, 688, 713
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 3 cut(s) 13, 560, 648
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 6 cut(s) 117, 597, 671, 844, 881, 1131
Ksp22I TGATCA 2 cut(s) 18, 1113
Kzo9I GATC 6 cut(s) 18, 87, 370, 625, 1113, 1124
LmnI GCTCC 4 cut(s) 36, 725, 972, 1083
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 2 cut(s) 89, 675
MaeI CTAG 2 cut(s) 638, 1095
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 3 cut(s) 487, 550, 767
MalI GATC 6 cut(s) 20, 89, 372, 627, 1115, 1126
MboI GATC 6 cut(s) 18, 87, 370, 625, 1113, 1124
MboII GAAGA 6 cut(s) 184, 269, 422, 712, 904, 1081
MhlI GDGCHC 3 cut(s) 33, 935, 969
MluCI AATT 4 cut(s) 455, 544, 570, 923
MlyI GAGTC 3 cut(s) 5, 764, 986
MmeI TCCRAC 4 cut(s) 183, 308, 591, 703
Mph1103I ATGCAT 1 cut(s) 690
MseI TTAA 4 cut(s) 279, 356, 378, 888
MslI CAYNNNNRTG 1 cut(s) 960
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 4 cut(s) 166, 759, 774, 1064
MspR9I CCNGG 2 cut(s) 759, 775
MwoI GCNNNNNNNGC 1 cut(s) 168
NciI CCSGG 2 cut(s) 759, 775
NcoI CCATGG 1 cut(s) 667
NdeI CATATG 2 cut(s) 47, 690
NdeII GATC 6 cut(s) 18, 87, 370, 625, 1113, 1124
NlaIII CATG 6 cut(s) 117, 597, 671, 844, 881, 1131
NlaIV GGNNCC 3 cut(s) 32, 727, 932
NmeAIII GCCGAG 3 cut(s) 309, 754, 974
NmuCI GTSAC 2 cut(s) 550, 767
NsiI ATGCAT 1 cut(s) 690
OliI CACNNNNGTG 1 cut(s) 960
PaeR7I CTCGAG 1 cut(s) 910
PagI TCATGA 1 cut(s) 1127
PfeI GAWTC 3 cut(s) 477, 694, 735
PfoI TCCNGGA 2 cut(s) 757, 773
PkrI GCNGC 2 cut(s) 173, 335
PleI GAGTC 3 cut(s) 5, 764, 986
PpsI GAGTC 3 cut(s) 5, 764, 986
PshBI ATTAAT 1 cut(s) 279
PsiI TTATAA 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 969
PspN4I GGNNCC 3 cut(s) 32, 727, 932
PspPI GGNCC 1 cut(s) 117
PspXI VCTCGAGB 1 cut(s) 910
RsaI GTAC 3 cut(s) 412, 586, 949
RsaNI GTAC 3 cut(s) 411, 585, 948
RseI CAYNNNNRTG 1 cut(s) 960
SacI GAGCTC 1 cut(s) 969
SaqAI TTAA 4 cut(s) 279, 356, 378, 888
SatI GCNGC 2 cut(s) 172, 334
Sau3AI GATC 6 cut(s) 18, 87, 370, 625, 1113, 1124
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 3 cut(s) 5, 764, 986
ScrFI CCNGG 2 cut(s) 759, 775
SduI GDGCHC 3 cut(s) 33, 935, 969
SfaNI GCATC 2 cut(s) 89, 675
Sfr274I CTCGAG 1 cut(s) 910
SinI GGWCC 1 cut(s) 117
SlaI CTCGAG 1 cut(s) 910
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 3 cut(s) 910, 974, 1120
SmoI CTYRAG 3 cut(s) 910, 974, 1120
SpeI ACTAGT 1 cut(s) 1094
Sse9I AATT 4 cut(s) 455, 544, 570, 923
SsiI CCGC 3 cut(s) 24, 130, 333
SspI AATATT 2 cut(s) 274, 781
SspMI CTAG 2 cut(s) 638, 1095
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 2 cut(s) 757, 773
StyI CCWWGG 2 cut(s) 65, 667
TaaI ACNGT 4 cut(s) 151, 158, 315, 391
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 911
TasI AATT 4 cut(s) 455, 544, 570, 923
TatI WGTACW 1 cut(s) 410
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 3 cut(s) 477, 694, 735
Tru1I TTAA 4 cut(s) 279, 356, 378, 888
Tru9I TTAA 4 cut(s) 279, 356, 378, 888
TscAI CASTG 3 cut(s) 21, 487, 1012
TseFI GTSAC 2 cut(s) 550, 767
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 2 cut(s) 550, 767
TspDTI ATGAA 3 cut(s) 707, 1001, 1119
TspGWI ACGGA 2 cut(s) 80, 930
TspRI CASTG 3 cut(s) 21, 487, 1012
VpaK11BI GGWCC 1 cut(s) 117
VspI ATTAAT 1 cut(s) 279
XapI RAATTY 1 cut(s) 570
XhoI CTCGAG 1 cut(s) 910
XspI CTAG 2 cut(s) 638, 1095
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.