Rh4CG101600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000289
Physical Location & Seq
Forward (+)
18765858 .. 18766987
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG101600.1

Sequence Viewer

Length: 1080 bp
ATGGAAGATGATTCAGAAACAACAGTACTCCCAAAAGAAATCATATGCTCTGAAATACTCCCAAGGCTACCAGTCAAGACTCTTCTGCGTTTTAGGTGTGTATGCAAGTCCTGGTCCTCTCTCATCCTCAACCCCGGTTTCGCCACCGCTTACCGGAACCTCTGCTCCGGGGAGAGAAAGCGCTCTCACCTCCTCTTCTTTACATGTGAATCTGAATATCCAAAGGAGCAACGCGTCTTCTCCGTTCAGCTCAACCAAGAAGGGAGCCAAAGACGAGCAACCCACGTTCTTACTTTGAAGCAACTATATCAAGCACAAAGCACAAAGGGCTTGGTTTGTTTTTCCCTTTCTAAAACTTCGAGTTCTTACCTTGAGGTCCTTGACAACCGTGTTCATATATTCAACCCCTCAACTCGACATATGGTTACGCTCCCCCAGACTTCACGCGTGAATCTCACAGTCTATGTTGCACACCACTTTGGATTCAGCTCTCTTACAAACGAGCACAAGGTTCTCCAAATCCAAAGATATAAACGGGGTTTAATTTTTAACACTTTTGTCCTTGGTACAAGTACTACATGGAGGCAAGTAGAGGTAGACCTTGCTGATCTCCCTTTTGATCCTCTCGAGTTCAAATTTGATACTAGCAGTGTATCCACCTATGGGGCTATACATTGGCTGCACCCAACATTGAATATTATTGTGGCTTTCGACATGAATGGGGCTGAGAGATTTAAGGTGGTACCAATTCCTGATGGTATTGATCTACATGATCCCCTCGTCAGACTAGATAAAGTGGATGGATGTCTGGCTCTAATAGATGGGCGGAAGCAGCAAAGCTACATGAAGGGGTTATGGATTTTGAAGGATTACAAAAATCATGTCTGGGTTAAGGAGGATATATTGTTTCCTTTTCAGAATGATATAGTACGGGGTTTAGCCGATCTTCGTTTGCATCAATACAATATGAAGACTAAAAGTTACAGGTTAAGTCAAATTTTGTTGCCGGAATGGAGGAATGATAGTCGAATGTTGGACATGCTGACTAGTTATGATGAAGGCATTGTACCTTTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

359

Amino Acids

41.56

Weight (kDa)

8.85

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 10 - 45 6e-06 F-box-like
F-box PF00646 18 - 47 3.6e-06 F-box domain
FBA_3 PF08268 73 - 311 4e-24 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 742
AccB1I GGYRCC 1 cut(s) 742
AccI GTMKAC 1 cut(s) 597
AccII CGCG 2 cut(s) 234, 447
AciI CCGC 2 cut(s) 147, 826
AclWI GGATC 2 cut(s) 614, 767
AcsI RAATTY 2 cut(s) 635, 996
AfaI GTAC 6 cut(s) 27, 568, 574, 744, 930, 1068
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 153, 663
AflIII ACRYGT 3 cut(s) 203, 232, 445
AgsI TTSAA 5 cut(s) 298, 403, 634, 694, 865
AhlI ACTAGT 1 cut(s) 1046
AjnI CCWGG 1 cut(s) 110
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 250, 489, 840
AluI AGCT 3 cut(s) 250, 489, 840
Alw21I GWGCWC 1 cut(s) 507
AlwI GGATC 2 cut(s) 614, 767
Ama87I CYCGRG 1 cut(s) 626
Aor51HI AGCGCT 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 679, 832
ApoI RAATTY 2 cut(s) 635, 996
ArsI GACNNNNNNTTYG 2 cut(s) 867, 899
Asp718I GGTACC 1 cut(s) 742
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 2 cut(s) 114, 376
AsuC2I CCSGG 2 cut(s) 135, 169
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 626
AvaII GGWCC 2 cut(s) 114, 376
BanI GGYRCC 1 cut(s) 742
BarI GAAGNNNNNNTAC 1 cut(s) 1050
BbsI GAAGAC 2 cut(s) 229, 977
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 666, 844
BccI CCATC 3 cut(s) 749, 794, 815
BciT130I CCWGG 1 cut(s) 112
BciVI GTATCC 1 cut(s) 664
BcnI CCSGG 2 cut(s) 135, 169
BcuI ACTAGT 1 cut(s) 1046
BfaI CTAG 3 cut(s) 645, 788, 1047
BfoI RGCGCY 1 cut(s) 184
BfuI GTATCC 1 cut(s) 664
BisI GCNGC 2 cut(s) 680, 833
BlsI GCNGC 2 cut(s) 681, 834
BmcAI AGTACT 2 cut(s) 27, 574
Bme1390I CCNGG 3 cut(s) 112, 135, 169
Bme18I GGWCC 2 cut(s) 114, 376
BmeT110I CYCGRG 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 114, 376
BmiI GGNNCC 3 cut(s) 158, 266, 744
BmrFI CCNGG 3 cut(s) 112, 135, 169
BmsI GCATC 1 cut(s) 964
BpiI GAAGAC 2 cut(s) 229, 977
BpuEI CTTGAG 1 cut(s) 392
BpuMI CCSGG 2 cut(s) 135, 169
BsaJI CCNNGG 4 cut(s) 62, 133, 168, 562
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 663
Bse1I ACTGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 4 cut(s) 62, 133, 168, 562
BseGI GGATG 3 cut(s) 123, 805, 809
BseLI CCNNNNNNNGG 2 cut(s) 153, 663
BseMII CTCAG 1 cut(s) 717
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 666, 844
BsgI GTGCAG 1 cut(s) 665
Bsh1236I CGCG 2 cut(s) 234, 447
BshNI GGYRCC 1 cut(s) 742
BsiHKAI GWGCWC 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 626
BsiSI CCGG 4 cut(s) 135, 154, 168, 1007
BslI CCNNNNNNNGG 2 cut(s) 153, 663
BsoBI CYCGRG 1 cut(s) 626
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 5 cut(s) 607, 619, 763, 772, 943
BspACI CCGC 2 cut(s) 147, 826
BspCNI CTCAG 1 cut(s) 718
BspFNI CGCG 2 cut(s) 234, 447
BspLI GGNNCC 3 cut(s) 158, 266, 744
BspPI GGATC 2 cut(s) 614, 767
BspT107I GGYRCC 1 cut(s) 742
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 62, 133, 168, 562
BssMI GATC 5 cut(s) 607, 619, 763, 772, 943
BssT1I CCWWGG 2 cut(s) 62, 562
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 3 cut(s) 25, 389, 460
Bst6I CTCTTC 2 cut(s) 87, 200
BstDEI CTNAG 1 cut(s) 726
BstF5I GGATG 3 cut(s) 123, 805, 809
BstFNI CGCG 2 cut(s) 234, 447
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 5 cut(s) 610, 622, 766, 775, 946
BstMBI GATC 5 cut(s) 607, 619, 763, 772, 943
BstMWI GCNNNNNNNGC 2 cut(s) 327, 832
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 2 cut(s) 207, 1042
BstSCI CCNGG 3 cut(s) 110, 133, 167
BstUI CGCG 2 cut(s) 234, 447
BstV1I GCAGC 2 cut(s) 666, 844
BstV2I GAAGAC 2 cut(s) 229, 977
BsuI GTATCC 1 cut(s) 664
BtsCI GGATG 3 cut(s) 123, 805, 809
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 1 cut(s) 655
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 2 cut(s) 114, 376
CseI GACGC 1 cut(s) 223
Csp6I GTAC 6 cut(s) 26, 567, 573, 743, 929, 1067
CviAII CATG 7 cut(s) 204, 579, 715, 770, 844, 881, 1039
CviQI GTAC 6 cut(s) 26, 567, 573, 743, 929, 1067
DdeI CTNAG 1 cut(s) 726
DpnI GATC 5 cut(s) 609, 621, 765, 774, 945
DpnII GATC 5 cut(s) 607, 619, 763, 772, 943
Eam1104I CTCTTC 2 cut(s) 87, 200
EarI CTCTTC 2 cut(s) 87, 200
EciI GGCGGA 1 cut(s) 841
Eco130I CCWWGG 2 cut(s) 62, 562
Eco47I GGWCC 2 cut(s) 114, 376
Eco47III AGCGCT 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 626
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 2 cut(s) 62, 562
ErhI CCWWGG 2 cut(s) 62, 562
FaeI CATG 7 cut(s) 207, 582, 718, 773, 847, 884, 1042
FatI CATG 7 cut(s) 203, 578, 714, 769, 843, 880, 1038
FauNDI CATATG 2 cut(s) 44, 420
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 2 cut(s) 680, 833
FokI GGATG 3 cut(s) 110, 812, 816
Fsp4HI GCNGC 2 cut(s) 680, 833
FspBI CTAG 3 cut(s) 645, 788, 1047
GlaI GCGC 1 cut(s) 182
GluI GCNGC 2 cut(s) 680, 833
HaeII RGCGCY 1 cut(s) 184
HapII CCGG 4 cut(s) 135, 154, 168, 1007
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 183
Hin1II CATG 7 cut(s) 207, 582, 718, 773, 847, 884, 1042
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 5 cut(s) 11, 79, 209, 451, 483
HpaII CCGG 4 cut(s) 135, 154, 168, 1007
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 5 cut(s) 16, 52, 214, 785, 918
Hpy188III TCNNGA 3 cut(s) 76, 626, 752
Hpy8I GTNNAC 1 cut(s) 598
HpyAV CCTTC 4 cut(s) 254, 841, 859, 1052
HpyCH4III ACNGT 3 cut(s) 25, 389, 460
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 4 cut(s) 105, 470, 682, 955
HpyF10VI GCNNNNNNNGC 2 cut(s) 327, 832
HpyF3I CTNAG 1 cut(s) 726
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 7 cut(s) 207, 582, 718, 773, 847, 884, 1042
HspAI GCGC 1 cut(s) 181
KpnI GGTACC 1 cut(s) 746
Kzo9I GATC 5 cut(s) 607, 619, 763, 772, 943
LmnI GCTCC 4 cut(s) 170, 226, 264, 435
Lsp1109I GCAGC 2 cut(s) 666, 844
LweI GCATC 1 cut(s) 964
MaeI CTAG 3 cut(s) 645, 788, 1047
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 424, 980
MalI GATC 5 cut(s) 609, 621, 765, 774, 945
MboI GATC 5 cut(s) 607, 619, 763, 772, 943
MboII GAAGA 6 cut(s) 17, 74, 187, 229, 938, 982
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 4 cut(s) 543, 635, 747, 996
MluI ACGCGT 2 cut(s) 232, 445
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 1014
MseI TTAA 6 cut(s) 542, 549, 735, 891, 989, 1073
MspI CCGG 4 cut(s) 135, 154, 168, 1007
MspR9I CCNGG 3 cut(s) 112, 135, 169
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 2 cut(s) 234, 447
MwoI GCNNNNNNNGC 2 cut(s) 327, 832
NciI CCSGG 2 cut(s) 135, 169
NdeI CATATG 2 cut(s) 44, 420
NdeII GATC 5 cut(s) 607, 619, 763, 772, 943
NlaIII CATG 7 cut(s) 207, 582, 718, 773, 847, 884, 1042
NlaIV GGNNCC 3 cut(s) 158, 266, 744
NspI RCATGY 2 cut(s) 207, 1042
PaeR7I CTCGAG 1 cut(s) 626
PciI ACATGT 1 cut(s) 203
PfeI GAWTC 4 cut(s) 11, 209, 451, 483
PkrI GCNGC 2 cut(s) 681, 834
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 376
PscI ACATGT 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 3 cut(s) 158, 266, 744
PspPI GGNCC 2 cut(s) 114, 376
PspPPI RGGWCCY 1 cut(s) 376
RsaI GTAC 6 cut(s) 27, 568, 574, 744, 930, 1068
RsaNI GTAC 6 cut(s) 26, 567, 573, 743, 929, 1067
SaqAI TTAA 6 cut(s) 542, 549, 735, 891, 989, 1073
SatI GCNGC 2 cut(s) 680, 833
Sau3AI GATC 5 cut(s) 607, 619, 763, 772, 943
Sau96I GGNCC 2 cut(s) 114, 376
ScaI AGTACT 2 cut(s) 27, 574
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 3 cut(s) 112, 135, 169
SduI GDGCHC 1 cut(s) 507
SfaNI GCATC 1 cut(s) 964
Sfr274I CTCGAG 1 cut(s) 626
SinI GGWCC 2 cut(s) 114, 376
SlaI CTCGAG 1 cut(s) 626
SmlI CTYRAG 2 cut(s) 371, 626
SmoI CTYRAG 2 cut(s) 371, 626
SpeI ACTAGT 1 cut(s) 1046
Sse9I AATT 4 cut(s) 543, 635, 747, 996
SsiI CCGC 2 cut(s) 147, 826
SspI AATATT 1 cut(s) 697
SspMI CTAG 3 cut(s) 645, 788, 1047
StyD4I CCNGG 3 cut(s) 110, 133, 167
StyI CCWWGG 2 cut(s) 62, 562
TaaI ACNGT 3 cut(s) 25, 389, 460
TaiI ACGT 1 cut(s) 288
TaqI TCGA 5 cut(s) 359, 415, 627, 711, 1027
TasI AATT 4 cut(s) 543, 635, 747, 996
TatI WGTACW 2 cut(s) 25, 572
TfiI GAWTC 4 cut(s) 11, 209, 451, 483
Tru1I TTAA 6 cut(s) 542, 549, 735, 891, 989, 1073
Tru9I TTAA 6 cut(s) 542, 549, 735, 891, 989, 1073
TscAI CASTG 1 cut(s) 655
TseI GCWGC 2 cut(s) 679, 832
TspDTI ATGAA 5 cut(s) 383, 731, 860, 983, 1071
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 655
VpaK11BI GGWCC 2 cut(s) 114, 376
XapI RAATTY 2 cut(s) 635, 996
XceI RCATGY 2 cut(s) 207, 1042
XhoI CTCGAG 1 cut(s) 626
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 3 cut(s) 645, 788, 1047
ZrmI AGTACT 2 cut(s) 27, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.