Rh4AG348800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000289
Physical Location & Seq
Forward (+)
65725651 .. 65727163
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG348800.1

Sequence Viewer

Length: 1173 bp
ATGCTAGGGCTACGTTCCAGTTGCGAAAGTAATAAAACATACATGGAAGCTGACTCAGTGATCAGCGGAGAGCTCCCACCCGAAATCATATGCTTCCAGATACTCCCAAGGCTACCGACCAAGTTTGTGATCCGTTGCAGATGCGTCTGCAAATCATGGTCCTCTCTCACCCGCAACCCTTCTTTTCTCACCGTCCACCGTAGCTTCCGGTGCAGCCCTTCCACTCACCTCCTCTTCACCACGTCGGACGAGACCACAACCACACTTCAACACTTTCACTCTGTGAAACTCAACCAAGAAGAAGGAGAAAAGAATATTATTAATCCAACAACAGACCTCTTTAGCCTTCCAGCACCGTCCTATTCCTTTCTCGGCGGCACACATAGTATCAACGGCTTGACGATTTTAGCCGATCAACTTAATGCCAAAACGGTTTATGTTTTCAATCCCTGTACTGAACAGATTATAACTCTTCCCCCTACTAGCCTTGAAGCCGAATTGTTTACACACCATCTCGGATTCAGTGCTGTTACAAACGAGTATAAGGTTTTCCAAGTGCATTGGTCTGGTAATGAGGATTACCCGAATTATGTGACTTCTCTGAGGTTCAAAATTTTCACTCTGGGTACAACTACATGGAGGCACATAGAGTTGGACTTTCCTTTTGATCCTGAAAGGCTAGACTTTGCTAAGAAAAGTGTATGCCTCCATGGAGGCATACATTGGATTCATATGAATCAGAAGATTATAGTTGCATTTGATGTTGGAGCCGAGAGATTCAGAGCCAACATCCCACTTCCCGGAGATTGTGACTCCGGGAATATTGTTGAAGTGGGTGGATGTGTGGCTGTGTATGATGACACATCATTGTTTCAACAGGACATGATGTTATTGTGGATTTTGGAGGATTACCAAAATCATGTGTGGGTTAAGAAGAATATCATATTTACCTCGAGTTGGGAGAAATTAGGGTGCCCTGTTCCGTTGGGTACAATCCACACAGGTGAGCTCCTGCTGAAGCCTACCTTACGGAACTCGGCCAATGTCAGTGTTCATCTATACAATATAGAGAGCGATAGCTTTCGGAAATGTAAGATTAGTTTGCCGGTGAAGATTGGTCTATGGAGCTTGCTTACTAGTTATGATGAAAGTGTGATCACCTTGAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

390

Amino Acids

44.13

Weight (kDa)

6.2

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 24 - 61 1.3e-06 F-box-like
FBA_3 PF08268 77 - 367 2.7e-38 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 129 - 271 3.3e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 130 - 323 8.6e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 972
AciI CCGC 3 cut(s) 66, 172, 375
AclWI GGATC 2 cut(s) 124, 662
AcoI YGGCCR 1 cut(s) 1038
AcsI RAATTY 1 cut(s) 612
AcuI CTGAAG 1 cut(s) 1037
AdeI CACNNNGTG 1 cut(s) 283
AfaI GTAC 3 cut(s) 454, 628, 991
AfiI CCNNNNNNNGG 2 cut(s) 800, 957
AgsI TTSAA 6 cut(s) 269, 445, 491, 610, 830, 875
AhlI ACTAGT 1 cut(s) 1136
AjiI CACGTC 1 cut(s) 243
AleI CACNNNNGTG 1 cut(s) 1002
AluBI AGCT 6 cut(s) 50, 73, 204, 1009, 1080, 1128
AluI AGCT 6 cut(s) 50, 73, 204, 1009, 1080, 1128
Alw21I GWGCWC 2 cut(s) 75, 1011
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 2 cut(s) 124, 662
Ama87I CYCGRG 1 cut(s) 952
AoxI GGCC 1 cut(s) 1038
ApeKI GCWGC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 612
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
AseI ATTAAT 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 2 cut(s) 801, 817
AsuHPI GGTGA 7 cut(s) 160, 181, 218, 229, 1016, 1120, 1150
AvaI CYCGRG 1 cut(s) 952
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 977
BanI GGYRCC 1 cut(s) 972
BanII GRGCYC 2 cut(s) 75, 1011
Bbv12I GWGCWC 2 cut(s) 75, 1011
BbvI GCAGC 1 cut(s) 225
BccI CCATC 1 cut(s) 519
BceAI ACGGC 1 cut(s) 409
BclI TGATCA 2 cut(s) 60, 1155
BcnI CCSGG 2 cut(s) 801, 817
BcoDI GTCTC 1 cut(s) 245
BcuI ACTAGT 1 cut(s) 1136
BfaI CTAG 4 cut(s) 5, 483, 680, 1137
BisI GCNGC 2 cut(s) 214, 376
BlsI GCNGC 2 cut(s) 215, 377
Bme1390I CCNGG 2 cut(s) 801, 817
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 952
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 769, 974
BmrFI CCNGG 2 cut(s) 801, 817
BmsI GCATC 1 cut(s) 131
BpuMI CCSGG 2 cut(s) 801, 817
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 107, 709
BsaWI WCCGGW 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 800, 957
Bse118I RCCGGY 1 cut(s) 1105
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 107, 709
BseGI GGATG 2 cut(s) 789, 845
BseLI CCNNNNNNNGG 2 cut(s) 800, 957
BseMII CTCAG 2 cut(s) 69, 593
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 977
BseXI GCAGC 1 cut(s) 225
BsgI GTGCAG 1 cut(s) 232
BshFI GGCC 1 cut(s) 1040
BshNI GGYRCC 1 cut(s) 972
BsiHKAI GWGCWC 2 cut(s) 75, 1011
BsiHKCI CYCGRG 1 cut(s) 952
BsiSI CCGG 4 cut(s) 208, 801, 816, 1106
BslI CCNNNNNNNGG 2 cut(s) 800, 957
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 1040
Bso31I GGTCTC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 952
Bsp1286I GDGCHC 3 cut(s) 75, 977, 1011
Bsp143I GATC 6 cut(s) 60, 129, 412, 667, 1155, 1166
Bsp19I CCATGG 1 cut(s) 709
BspACI CCGC 3 cut(s) 66, 172, 375
BspANI GGCC 1 cut(s) 1040
BspCNI CTCAG 2 cut(s) 68, 594
BspHI TCATGA 1 cut(s) 1169
BspLI GGNNCC 2 cut(s) 769, 974
BspPI GGATC 2 cut(s) 124, 662
BspT107I GGYRCC 1 cut(s) 972
BspTNI GGTCTC 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 1105
BsrI ACTGG 1 cut(s) 18
BssAI RCCGGY 1 cut(s) 1105
BssECI CCNNGG 2 cut(s) 107, 709
BssMI GATC 6 cut(s) 60, 129, 412, 667, 1155, 1166
BssT1I CCWWGG 2 cut(s) 107, 709
Bst4CI ACNGT 4 cut(s) 193, 200, 357, 433
Bst6I CTCTTC 2 cut(s) 239, 477
BstC8I GCNNGC 1 cut(s) 1130
BstDEI CTNAG 3 cut(s) 55, 602, 690
BstDSI CCRYGG 1 cut(s) 709
BstF5I GGATG 2 cut(s) 789, 845
BstKTI GATC 6 cut(s) 63, 132, 415, 670, 1158, 1169
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 6 cut(s) 60, 129, 412, 667, 1155, 1166
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSCI CCNGG 2 cut(s) 799, 815
BstSLI GKGCMC 1 cut(s) 977
BstV1I GCAGC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 1040
BtgI CCRYGG 1 cut(s) 709
BtrI CACGTC 1 cut(s) 243
BtsCI GGATG 2 cut(s) 789, 845
BtsIMutI CAGTG 3 cut(s) 63, 529, 1054
Cac8I GCNNGC 1 cut(s) 1130
CciI TCATGA 1 cut(s) 1169
Cfr10I RCCGGY 1 cut(s) 1105
Cfr13I GGNCC 1 cut(s) 159
CseI GACGC 1 cut(s) 133
Csp6I GTAC 3 cut(s) 453, 627, 990
CviAII CATG 7 cut(s) 43, 156, 636, 710, 883, 920, 1170
CviQI GTAC 3 cut(s) 453, 627, 990
DdeI CTNAG 3 cut(s) 55, 602, 690
DpnI GATC 6 cut(s) 62, 131, 414, 669, 1157, 1168
DpnII GATC 6 cut(s) 60, 129, 412, 667, 1155, 1166
DraIII CACNNNGTG 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 1038
Eam1104I CTCTTC 2 cut(s) 239, 477
EarI CTCTTC 2 cut(s) 239, 477
Ecl136II GAGCTC 2 cut(s) 73, 1009
Eco130I CCWWGG 2 cut(s) 107, 709
Eco24I GRGCYC 2 cut(s) 75, 1011
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 2 cut(s) 73, 1009
Eco57I CTGAAG 1 cut(s) 1037
Eco88I CYCGRG 1 cut(s) 952
EcoICRI GAGCTC 2 cut(s) 73, 1009
EcoT14I CCWWGG 2 cut(s) 107, 709
EcoT38I GRGCYC 2 cut(s) 75, 1011
ErhI CCWWGG 2 cut(s) 107, 709
FaeI CATG 7 cut(s) 46, 159, 639, 713, 886, 923, 1173
FalI AAGNNNNNCTT 2 cut(s) 1010, 1042
FatI CATG 7 cut(s) 42, 155, 635, 709, 882, 919, 1169
FauI CCCGC 1 cut(s) 179
FauNDI CATATG 2 cut(s) 89, 732
FbaI TGATCA 2 cut(s) 60, 1155
Fnu4HI GCNGC 2 cut(s) 214, 376
FokI GGATG 2 cut(s) 776, 852
FriOI GRGCYC 2 cut(s) 75, 1011
Fsp4HI GCNGC 2 cut(s) 214, 376
FspBI CTAG 4 cut(s) 5, 483, 680, 1137
GluI GCNGC 2 cut(s) 214, 376
HaeIII GGCC 1 cut(s) 1040
HapII CCGG 4 cut(s) 208, 801, 816, 1106
HgaI GACGC 1 cut(s) 133
Hin1II CATG 7 cut(s) 46, 159, 639, 713, 886, 923, 1173
HinfI GANTC 6 cut(s) 53, 519, 727, 736, 777, 812
HpaII CCGG 4 cut(s) 208, 801, 816, 1106
HphI GGTGA 7 cut(s) 160, 181, 218, 229, 1016, 1120, 1150
Hpy166II GTNNAC 2 cut(s) 196, 504
Hpy188I TCNGA 6 cut(s) 247, 518, 603, 741, 782, 1086
Hpy188III TCNNGA 3 cut(s) 97, 671, 1170
Hpy8I GTNNAC 2 cut(s) 196, 504
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 4 cut(s) 189, 228, 296, 356
HpyCH4III ACNGT 4 cut(s) 193, 200, 357, 433
HpyCH4IV ACGT 2 cut(s) 13, 242
HpyCH4V TGCA 5 cut(s) 138, 150, 213, 559, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 3 cut(s) 55, 602, 690
HpySE526I ACGT 2 cut(s) 13, 242
Hsp92II CATG 7 cut(s) 46, 159, 639, 713, 886, 923, 1173
Ksp22I TGATCA 2 cut(s) 60, 1155
Kzo9I GATC 6 cut(s) 60, 129, 412, 667, 1155, 1166
LmnI GCTCC 4 cut(s) 78, 767, 1014, 1125
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 131
MaeI CTAG 4 cut(s) 5, 483, 680, 1137
MaeII ACGT 2 cut(s) 13, 242
MaeIII GTNAC 3 cut(s) 529, 592, 809
MalI GATC 6 cut(s) 62, 131, 414, 669, 1157, 1168
MboI GATC 6 cut(s) 60, 129, 412, 667, 1155, 1166
MboII GAAGA 6 cut(s) 226, 311, 464, 754, 946, 1123
MhlI GDGCHC 3 cut(s) 75, 977, 1011
MluCI AATT 4 cut(s) 497, 586, 612, 965
MlyI GAGTC 2 cut(s) 47, 806
MmeI TCCRAC 4 cut(s) 225, 350, 633, 745
MseI TTAA 3 cut(s) 321, 420, 930
MslI CAYNNNNRTG 1 cut(s) 1002
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 4 cut(s) 208, 801, 816, 1106
MspR9I CCNGG 2 cut(s) 801, 817
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 2 cut(s) 801, 817
NcoI CCATGG 1 cut(s) 709
NdeI CATATG 2 cut(s) 89, 732
NdeII GATC 6 cut(s) 60, 129, 412, 667, 1155, 1166
NlaIII CATG 7 cut(s) 46, 159, 639, 713, 886, 923, 1173
NlaIV GGNNCC 2 cut(s) 769, 974
NmeAIII GCCGAG 3 cut(s) 351, 796, 1016
NmuCI GTSAC 2 cut(s) 592, 809
OliI CACNNNNGTG 1 cut(s) 1002
PaeR7I CTCGAG 1 cut(s) 952
PagI TCATGA 1 cut(s) 1169
PfeI GAWTC 4 cut(s) 519, 727, 736, 777
PfoI TCCNGGA 2 cut(s) 799, 815
PkrI GCNGC 2 cut(s) 215, 377
PleI GAGTC 2 cut(s) 47, 806
PpsI GAGTC 2 cut(s) 47, 806
PshBI ATTAAT 1 cut(s) 321
PsiI TTATAA 1 cut(s) 467
Psp124BI GAGCTC 2 cut(s) 75, 1011
PspN4I GGNNCC 2 cut(s) 769, 974
PspPI GGNCC 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 952
RsaI GTAC 3 cut(s) 454, 628, 991
RsaNI GTAC 3 cut(s) 453, 627, 990
RseI CAYNNNNRTG 1 cut(s) 1002
SacI GAGCTC 2 cut(s) 75, 1011
SaqAI TTAA 3 cut(s) 321, 420, 930
SatI GCNGC 2 cut(s) 214, 376
Sau3AI GATC 6 cut(s) 60, 129, 412, 667, 1155, 1166
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 2 cut(s) 47, 806
ScrFI CCNGG 2 cut(s) 801, 817
SduI GDGCHC 3 cut(s) 75, 977, 1011
SfaNI GCATC 1 cut(s) 131
Sfr274I CTCGAG 1 cut(s) 952
SinI GGWCC 1 cut(s) 159
SlaI CTCGAG 1 cut(s) 952
SmiMI CAYNNNNRTG 1 cut(s) 1002
SmlI CTYRAG 2 cut(s) 952, 1162
SmoI CTYRAG 2 cut(s) 952, 1162
SpeI ACTAGT 1 cut(s) 1136
Sse9I AATT 4 cut(s) 497, 586, 612, 965
SsiI CCGC 3 cut(s) 66, 172, 375
SspI AATATT 2 cut(s) 316, 823
SspMI CTAG 4 cut(s) 5, 483, 680, 1137
SstI GAGCTC 2 cut(s) 75, 1011
StyD4I CCNGG 2 cut(s) 799, 815
StyI CCWWGG 2 cut(s) 107, 709
TaaI ACNGT 4 cut(s) 193, 200, 357, 433
TaiI ACGT 2 cut(s) 16, 245
TaqI TCGA 1 cut(s) 953
TasI AATT 4 cut(s) 497, 586, 612, 965
TatI WGTACW 1 cut(s) 452
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 4 cut(s) 519, 727, 736, 777
Tru1I TTAA 3 cut(s) 321, 420, 930
Tru9I TTAA 3 cut(s) 321, 420, 930
TscAI CASTG 3 cut(s) 63, 529, 1054
TseFI GTSAC 2 cut(s) 592, 809
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 2 cut(s) 592, 809
TspDTI ATGAA 4 cut(s) 719, 749, 1043, 1161
TspGWI ACGGA 3 cut(s) 122, 972, 1045
TspRI CASTG 3 cut(s) 63, 529, 1054
VpaK11BI GGWCC 1 cut(s) 159
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 1 cut(s) 612
XhoI CTCGAG 1 cut(s) 952
XspI CTAG 4 cut(s) 5, 483, 680, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.