Rh2DG419200

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000289
Physical Location & Seq
Forward (+)
60805463 .. 60806187
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG419200.1

Sequence Viewer

Length: 633 bp
ATGCCTATAGAATATTACAACGTTGCAAAGCTTCCCACCGACGTCATATTGTTTGAGATATTCTCAAGATTACCGGCCAAGTCCTTGATACGGTTTAGGTGCGTATGTAAATCTTGGTCCTCCCTCATCCGCCATCCTTTCTTTGTCAGAACCCACCAAAAGTTGCAGACTCAATCAAGCCATAACCACCACCTCCTTTGGCACCCAAATTTGGCTGAACCAGAGAGAGAGCAGATATGTCAATCTTTGACTTGCAAAAATCTCACTTCTGAAGTTGGGATTCAAGCAGCAAAAAACCGTCTTTTGTCATTAAGGACAATTGATGAGCTTTTCTATCTCAACAACCAGGAACTTAAAGATGAAGTTGAAGAGCATAAGAACCGGATTTCTGATCTTGAGAGTGCGAACATGAAGATGAATGAAGTCATTGAGAATCTAAAGAAAAAGGTGGAGAAGTTGGGCAGTGGGCATTCAAAACGATCAAACAAGTGGACAACGATGTCTAAGAAATTGGGCTTCAGCAAGAAGCCTCTGCAACTGGGGTGTCGTACAAGTCAGGAGGCAGTGCACAACCCAAACCCTAGGAGGAAGGACAACGTTAGTTCTACCGGAAAATACAGACTCCTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

210

Amino Acids

24.45

Weight (kDa)

9.73

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 10 - 48 3.1e-09 F-box-like
F-box PF00646 11 - 48 3.8e-11 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 499
AatII GACGTC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 1 cut(s) 130
AclI AACGTT 2 cut(s) 21, 597
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 2 cut(s) 291, 502
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 2 cut(s) 90, 211
AgsI TTSAA 3 cut(s) 284, 368, 474
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 2 cut(s) 31, 328
AluI AGCT 2 cut(s) 31, 328
Alw21I GWGCWC 1 cut(s) 570
Alw44I GTGCAC 1 cut(s) 566
AoxI GGCC 1 cut(s) 75
ApaLI GTGCAC 1 cut(s) 566
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 208
AspA2I CCTAGG 1 cut(s) 581
AspS9I GGNCC 1 cut(s) 117
AvaII GGWCC 1 cut(s) 117
AvrII CCTAGG 1 cut(s) 581
BaeGI GKGCMC 1 cut(s) 570
BanI GGYRCC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 347
BfaI CTAG 1 cut(s) 582
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 288
BlnI CCTAGG 1 cut(s) 581
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 347
BmrI ACTGGG 1 cut(s) 548
BmuI ACTGGG 1 cut(s) 548
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuEI CTTGAG 2 cut(s) 49, 416
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 581
BsaWI WCCGGW 2 cut(s) 381, 608
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 211
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 581
BseGI GGATG 2 cut(s) 126, 133
BseLI CCNNNNNNNGG 2 cut(s) 90, 211
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 2 cut(s) 614, 617
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 3 cut(s) 74, 382, 609
BslI CCNNNNNNNGG 2 cut(s) 90, 211
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 2 cut(s) 391, 479
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 543
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 2 cut(s) 391, 479
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 93, 299
Bst6I CTCTTC 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 504
BstF5I GGATG 2 cut(s) 126, 133
BstKTI GATC 2 cut(s) 394, 482
BstMBI GATC 2 cut(s) 391, 479
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 570
BstV1I GCAGC 1 cut(s) 299
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 126, 133
BtsI GCAGTG 2 cut(s) 469, 570
BtsIMutI CAGTG 2 cut(s) 469, 570
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 549
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviAII CATG 1 cut(s) 409
CviJI RGCY 7 cut(s) 31, 77, 180, 215, 328, 516, 529
CviKI_1 RGCY 7 cut(s) 31, 77, 180, 215, 328, 516, 529
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 1 cut(s) 504
DpnI GATC 2 cut(s) 393, 481
DpnII GATC 2 cut(s) 391, 479
DrdI GACNNNNNNGTC 1 cut(s) 499
DseDI GACNNNNNNGTC 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 581
Eco47I GGWCC 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 291, 502
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 1 cut(s) 412
FaiI YATR 7 cut(s) 8, 47, 106, 183, 238, 375, 410
FatI CATG 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 2 cut(s) 113, 120
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 582
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 77
HapII CCGG 3 cut(s) 74, 382, 609
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 4 cut(s) 169, 280, 433, 621
HpaII CCGG 3 cut(s) 74, 382, 609
Hpy166II GTNNAC 2 cut(s) 492, 568
Hpy188I TCNGA 4 cut(s) 149, 271, 391, 632
Hpy188III TCNNGA 3 cut(s) 66, 395, 557
Hpy8I GTNNAC 2 cut(s) 492, 568
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 2 cut(s) 93, 299
HpyCH4IV ACGT 3 cut(s) 21, 42, 597
HpyCH4V TGCA 5 cut(s) 26, 166, 255, 535, 568
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 3 cut(s) 21, 42, 597
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 1 cut(s) 412
Kzo9I GATC 2 cut(s) 391, 479
LguI GCTCTTC 1 cut(s) 363
LpnPI CCDG 8 cut(s) 87, 234, 332, 359, 395, 524, 542, 622
Lsp1109I GCAGC 1 cut(s) 299
MaeI CTAG 1 cut(s) 582
MaeII ACGT 3 cut(s) 21, 42, 597
MalI GATC 2 cut(s) 393, 481
MboI GATC 2 cut(s) 391, 479
MboII GAAGA 2 cut(s) 380, 424
MfeI CAATTG 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 3 cut(s) 208, 318, 509
MlyI GAGTC 2 cut(s) 163, 615
MnlI CCTC 6 cut(s) 130, 134, 203, 540, 553, 579
MseI TTAA 2 cut(s) 311, 354
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 3 cut(s) 74, 382, 609
MspR9I CCNGG 1 cut(s) 347
MunI CAATTG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 1 cut(s) 347
NdeII GATC 2 cut(s) 391, 479
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 363
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 280, 433
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 2 cut(s) 163, 615
PpsI GAGTC 2 cut(s) 163, 615
Psp1406I AACGTT 2 cut(s) 21, 597
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 117
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 311, 354
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 391, 479
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 2 cut(s) 163, 615
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 1 cut(s) 570
SetI ASST 8 cut(s) 24, 33, 45, 101, 195, 330, 450, 600
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 64, 395
SmoI CTYRAG 2 cut(s) 64, 395
Sse9I AATT 3 cut(s) 208, 318, 509
SsiI CCGC 1 cut(s) 130
SspI AATATT 1 cut(s) 14
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 2 cut(s) 93, 299
TaiI ACGT 3 cut(s) 24, 45, 600
TasI AATT 3 cut(s) 208, 318, 509
TfiI GAWTC 2 cut(s) 280, 433
Tru1I TTAA 2 cut(s) 311, 354
Tru9I TTAA 2 cut(s) 311, 354
TscAI CASTG 2 cut(s) 469, 570
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 4 cut(s) 375, 425, 431, 435
TspRI CASTG 2 cut(s) 469, 570
VneI GTGCAC 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 208
XmaJI CCTAGG 1 cut(s) 581
XspI CTAG 1 cut(s) 582
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.