MD02G1067600.v1.1

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000289
Physical Location & Seq
Reverse (-)
5521716 .. 5524772
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1067600.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGCCGGTCAGAAAATTTCAGAGCAGTGAATTGGAAGAAAAATATAGAGTTACGGACATAGAAGTTGATGATCATCCAACACCAGAGCTCCCAAGTGAGATCATATTCACGCATATACTCCCAAGGCTACCTCCCAAGTTCTTAATAAAGCAGTGCAGCAGCGTATGCAAGTCATGGTCCTCTCTCATCCGCCACCATTCCTTTGTCACTGCTTACCGCAACTTTCAGTGCAGCAAGGGTACTACTAACCTCCTTTTACGGAAGGGGGATCGTTTCTTCTCCTCCCAACTAAACCAAGAAGGGAATCTAACACCCGCCACCCGCCTTTCCACCATTGATATTGAACCGAAATATTATTACTCCGGGGTAAGAAGTTTGGATGGCTTACTGGTTATTGGATCCGATGGTGATGGCCCTGTTACCATATCTAATCCTTCCACTGGAGAGTCTATCCAACTGCCCCATGAAAAAATCGACCGCAAGATATGCCCGACATATTACATTGGGTTCAGTCCATTTACAAACGAGTATAAGGTTCTCCAAATCTTATTGGGTTTTGATGAAAAAGAGGATACTATTATTACGTTGAATATTTTTACACTTGGTATGGATTATTCATGGAGGCCATTACAAGTAGACGTTGGCGATCTTCCTTTTGATCTCCAACATCCCCCCTTTGACATGAGAAGTGACAGGAGAAGTGTGTGTCTTCATGGGGCTATCCACTGGCTACACGAGCAGAGTCAAAGTATATTAGTATTTGACCTCGGCGACGAGGCATTCAGAGTTATTCCGCTTCCTCAGGAGTATGATTATACTAGAGAATGGGAATGGAATGATTATAGTCCGGATCTTCCTATAGTTGAAGTGGGAGGATGTGTGGGAGTGTTTGTTGACAACTCGCAGAAACAAAACCCGTTATGGATTTTGAAGGACTACCAAAACCATGTGTGGGTTAAGGAAACTATTCCCGTACTGTCGACAGTGAGACGATACCATGATAGGTGGAAACTTGATTGTTTCGGTACAATTGGCGCAGGTGATGACCTACTGCTTGAGGGATGCCTTCTGTCTATGACTATCCAGAAGGACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

366

Amino Acids

42.01

Weight (kDa)

5.24

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 89 - 350 2.1e-29 F-box associated beta propeller domain
FBA_1 PF07734 107 - 273 2.1e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1028
Acc36I ACCTGC 1 cut(s) 1028
AccI GTMKAC 2 cut(s) 636, 980
AccIII TCCGGA 1 cut(s) 847
AciI CCGC 6 cut(s) 190, 217, 315, 322, 478, 794
AclWI GGATC 4 cut(s) 276, 393, 406, 858
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 3 cut(s) 241, 975, 1027
AfiI CCNNNNNNNGG 2 cut(s) 440, 952
AgsI TTSAA 4 cut(s) 344, 589, 866, 931
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 982
AlwI GGATC 4 cut(s) 276, 393, 406, 858
Aor13HI TCCGGA 1 cut(s) 847
AoxI GGCC 2 cut(s) 412, 623
ApeKI GCWGC 3 cut(s) 156, 159, 231
ApoI RAATTY 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 966
AspLEI GCGC 1 cut(s) 1037
AspS9I GGNCC 3 cut(s) 177, 413, 1090
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 2 cut(s) 419, 1052
AvaII GGWCC 2 cut(s) 177, 1090
AxyI CCTNAGG 1 cut(s) 801
BamHI GGATCC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 90
BauI CACGAG 1 cut(s) 734
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 168, 171, 243
BccI CCATC 3 cut(s) 374, 398, 404
BciVI GTATCC 1 cut(s) 565
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 982
BfaI CTAG 1 cut(s) 819
BfmI CTRYAG 1 cut(s) 858
BfuAI ACCTGC 1 cut(s) 1028
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 3 cut(s) 157, 160, 232
BlsI GCNGC 3 cut(s) 158, 161, 233
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 2 cut(s) 177, 1090
BmgT120I GGNCC 3 cut(s) 177, 413, 1090
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 1 cut(s) 1052
BpiI GAAGAC 1 cut(s) 701
BpmI CTGGAG 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 1076
BpuMI CCSGG 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 122, 363, 766
BsaWI WCCGGW 1 cut(s) 847
BsaXI ACNNNNNCTCC 6 cut(s) 72, 102, 864, 876, 894, 906
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 952
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 3 cut(s) 393, 445, 731
Bse21I CCTNAGG 1 cut(s) 801
Bse8I GATNNNNATC 1 cut(s) 72
BseAI TCCGGA 1 cut(s) 847
BseDI CCNNGG 3 cut(s) 122, 363, 766
BseGI GGATG 6 cut(s) 73, 186, 385, 667, 881, 1067
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 440, 952
BseMII CTCAG 1 cut(s) 815
BseNI ACTGG 3 cut(s) 393, 445, 731
BseRI GAGGAG 1 cut(s) 271
BseXI GCAGC 3 cut(s) 168, 171, 243
BsgI GTGCAG 2 cut(s) 175, 250
Bsh1285I CGRYCG 1 cut(s) 478
BshFI GGCC 2 cut(s) 414, 625
BsiEI CGRYCG 1 cut(s) 478
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 3 cut(s) 5, 363, 848
BslI CCNNNNNNNGG 2 cut(s) 440, 952
BsmAI GTCTC 1 cut(s) 982
BsmBI CGTCTC 1 cut(s) 982
BsmI GAATGC 1 cut(s) 779
BsnI GGCC 2 cut(s) 414, 625
Bsp1286I GDGCHC 1 cut(s) 90
Bsp13I TCCGGA 1 cut(s) 847
Bsp143I GATC 7 cut(s) 70, 99, 268, 398, 646, 658, 850
BspACI CCGC 6 cut(s) 190, 217, 315, 322, 478, 794
BspANI GGCC 2 cut(s) 414, 625
BspCNI CTCAG 1 cut(s) 814
BspEI TCCGGA 1 cut(s) 847
BspLI GGNNCC 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 1028
BspPI GGATC 4 cut(s) 276, 393, 406, 858
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 3 cut(s) 393, 445, 731
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 3 cut(s) 122, 363, 766
BssMI GATC 7 cut(s) 70, 99, 268, 398, 646, 658, 850
BssSI CACGAG 1 cut(s) 734
BssT1I CCWWGG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 734
Bst4CI ACNGT 2 cut(s) 978, 985
BstAPI GCANNNNNTGC 2 cut(s) 165, 486
BstDEI CTNAG 1 cut(s) 801
BstF5I GGATG 6 cut(s) 73, 186, 385, 667, 881, 1067
BstHHI GCGC 1 cut(s) 1037
BstKTI GATC 7 cut(s) 73, 102, 271, 401, 649, 661, 853
BstMAI GTCTC 1 cut(s) 982
BstMBI GATC 7 cut(s) 70, 99, 268, 398, 646, 658, 850
BstMCI CGRYCG 1 cut(s) 478
BstMWI GCNNNNNNNGC 3 cut(s) 165, 486, 736
BstSCI CCNGG 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 858
BstV1I GCAGC 3 cut(s) 168, 171, 243
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 2 cut(s) 398, 850
BstYI RGATCY 2 cut(s) 398, 850
Bsu36I CCTNAGG 1 cut(s) 801
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 2 cut(s) 414, 625
BtsCI GGATG 6 cut(s) 73, 186, 385, 667, 881, 1067
BtsI GCAGTG 3 cut(s) 31, 158, 207
BtsIMutI CAGTG 7 cut(s) 31, 158, 207, 233, 438, 724, 990
BveI ACCTGC 1 cut(s) 1028
CfoI GCGC 1 cut(s) 1037
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 3 cut(s) 177, 413, 1090
Csp6I GTAC 3 cut(s) 240, 974, 1026
CviAII CATG 7 cut(s) 174, 464, 618, 682, 713, 947, 998
CviJI RGCY 7 cut(s) 88, 127, 384, 414, 625, 719, 730
CviKI_1 RGCY 7 cut(s) 88, 127, 384, 414, 625, 719, 730
CviQI GTAC 3 cut(s) 240, 974, 1026
DdeI CTNAG 1 cut(s) 801
DpnI GATC 7 cut(s) 72, 101, 270, 400, 648, 660, 852
DpnII GATC 7 cut(s) 70, 99, 268, 398, 646, 658, 850
EciI GGCGGA 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 177, 1090
Eco53kI GAGCTC 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 801
EcoICRI GAGCTC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 982
FaeI CATG 7 cut(s) 177, 467, 621, 685, 716, 950, 1001
FatI CATG 7 cut(s) 173, 463, 617, 681, 712, 946, 997
FauI CCCGC 2 cut(s) 322, 329
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 2 cut(s) 636, 980
Fnu4HI GCNGC 3 cut(s) 157, 160, 232
FokI GGATG 6 cut(s) 60, 173, 392, 654, 888, 1074
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 3 cut(s) 157, 160, 232
FspBI CTAG 1 cut(s) 819
GlaI GCGC 1 cut(s) 1036
GluI GCNGC 3 cut(s) 157, 160, 232
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 2 cut(s) 414, 625
HapII CCGG 3 cut(s) 5, 363, 848
HhaI GCGC 1 cut(s) 1037
Hin1II CATG 7 cut(s) 177, 467, 621, 685, 716, 950, 1001
Hin6I GCGC 1 cut(s) 1035
HinP1I GCGC 1 cut(s) 1035
HincII GTYRAC 2 cut(s) 895, 981
HindII GTYRAC 2 cut(s) 895, 981
HinfI GANTC 3 cut(s) 304, 446, 742
HpaII CCGG 3 cut(s) 5, 363, 848
HphI GGTGA 2 cut(s) 419, 1052
Hpy166II GTNNAC 3 cut(s) 637, 895, 981
Hpy188I TCNGA 4 cut(s) 11, 21, 403, 785
Hpy188III TCNNGA 3 cut(s) 803, 848, 1084
Hpy8I GTNNAC 3 cut(s) 637, 895, 981
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 6 cut(s) 256, 293, 444, 925, 1076, 1081
HpyCH4III ACNGT 2 cut(s) 978, 985
HpyCH4IV ACGT 2 cut(s) 584, 639
HpyCH4V TGCA 3 cut(s) 156, 168, 231
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 486, 736
HpyF3I CTNAG 1 cut(s) 801
HpySE526I ACGT 2 cut(s) 584, 639
Hsp92II CATG 7 cut(s) 177, 467, 621, 685, 716, 950, 1001
HspAI GCGC 1 cut(s) 1035
Kpn2I TCCGGA 1 cut(s) 847
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 7 cut(s) 70, 99, 268, 398, 646, 658, 850
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 3 cut(s) 168, 171, 243
LweI GCATC 1 cut(s) 1052
MaeI CTAG 1 cut(s) 819
MaeII ACGT 2 cut(s) 584, 639
MaeIII GTNAC 4 cut(s) 49, 205, 418, 689
MalI GATC 7 cut(s) 72, 101, 270, 400, 648, 660, 852
MboI GATC 7 cut(s) 70, 99, 268, 398, 646, 658, 850
MboII GAAGA 5 cut(s) 47, 268, 641, 701, 845
MfeI CAATTG 1 cut(s) 1029
MflI RGATCY 2 cut(s) 398, 850
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 3 cut(s) 14, 29, 1029
MlyI GAGTC 2 cut(s) 455, 751
MmeI TCCRAC 3 cut(s) 101, 478, 688
MroI TCCGGA 1 cut(s) 847
MroXI GAANNNNTTC 1 cut(s) 966
MseI TTAA 2 cut(s) 143, 957
MspI CCGG 3 cut(s) 5, 363, 848
MspR9I CCNGG 1 cut(s) 364
MunI CAATTG 1 cut(s) 1029
Mva1269I GAATGC 1 cut(s) 779
MwoI GCNNNNNNNGC 3 cut(s) 165, 486, 736
NciI CCSGG 1 cut(s) 364
NdeII GATC 7 cut(s) 70, 99, 268, 398, 646, 658, 850
NlaIII CATG 7 cut(s) 177, 467, 621, 685, 716, 950, 1001
NlaIV GGNNCC 1 cut(s) 400
NmeAIII GCCGAG 1 cut(s) 747
NmuCI GTSAC 2 cut(s) 205, 689
PaqCI CACCTGC 1 cut(s) 1028
PctI GAATGC 1 cut(s) 779
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 3 cut(s) 158, 161, 233
PleI GAGTC 2 cut(s) 454, 750
PpsI GAGTC 2 cut(s) 454, 750
Psp124BI GAGCTC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 3 cut(s) 177, 413, 1090
PsuI RGATCY 2 cut(s) 398, 850
RsaI GTAC 3 cut(s) 241, 975, 1027
RsaNI GTAC 3 cut(s) 240, 974, 1026
SacI GAGCTC 1 cut(s) 90
SalI GTCGAC 1 cut(s) 979
SaqAI TTAA 2 cut(s) 143, 957
SatI GCNGC 3 cut(s) 157, 160, 232
Sau3AI GATC 7 cut(s) 70, 99, 268, 398, 646, 658, 850
Sau96I GGNCC 3 cut(s) 177, 413, 1090
SchI GAGTC 2 cut(s) 455, 751
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 1 cut(s) 1052
SfcI CTRYAG 1 cut(s) 858
SinI GGWCC 2 cut(s) 177, 1090
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
Sse9I AATT 3 cut(s) 14, 29, 1029
SsiI CCGC 6 cut(s) 190, 217, 315, 322, 478, 794
SspI AATATT 2 cut(s) 353, 592
SspMI CTAG 1 cut(s) 819
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 362
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 978, 985
TaiI ACGT 2 cut(s) 587, 642
TaqI TCGA 2 cut(s) 474, 980
TasI AATT 3 cut(s) 14, 29, 1029
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 2 cut(s) 143, 957
Tru9I TTAA 2 cut(s) 143, 957
TscAI CASTG 7 cut(s) 31, 158, 214, 233, 445, 731, 990
TseFI GTSAC 2 cut(s) 205, 689
TseI GCWGC 3 cut(s) 156, 159, 231
Tsp45I GTSAC 2 cut(s) 205, 689
TspDTI ATGAA 4 cut(s) 480, 576, 606, 701
TspGWI ACGGA 2 cut(s) 68, 274
TspRI CASTG 7 cut(s) 31, 158, 214, 233, 445, 731, 990
VpaK11BI GGWCC 2 cut(s) 177, 1090
XapI RAATTY 1 cut(s) 14
XmiI GTMKAC 2 cut(s) 636, 980
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.