FvH4_4g07100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000289
Physical Location & Seq
Forward (+)
6514139 .. 6515419
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07100.t1

Sequence Viewer

Length: 1281 bp
ATGGAAGAAGATGCAGATGTCCCCAGCTTTCTGCAAACCCTAGCATCAAACCTCTTGGTCTCCTTTGTACCTTCAATAACTCGTCTCTCGACCCCTCCGCTGCGAAACCCTAAAAAAATAGAAGCAGATGATGCAGAAGCAGAACCACTCCCAACCGATGTCATCTGCTTTGATATCCTCCCAAGACTACCACCTGAGTCCTTGATGCGCATTAGATATGTCTGCAAGTCTTGGTTTACTATCACCCGAAACCCTAGTTTCGTCAGCGCCTACCGTAACTTCCACCGCCCCAGCGTTAGGCAATCGCACCTCCTCCTCATCACTTGGGAAAAAGCAACAAAGCAGCACCACCTCTTCTCTTCTGAAATCAACGAAGGTGACGAAATTACAACACCCACCACCCAACACCTTTTATCTTTGTCCTGCACTAGTTGTGTTAACTATGGTGCACAAAGTGCGAATGGCTTGATCTGTCTTCATCTTTCAAACTATGGTGGTGTTTTCGATAATCCGAGTTACCCTGTTAGAGTTCTTAATCCTACAACCCTAGAGTGCATTACTCTGCCTCATTCCTCATGCATTCACCCCACATCCGATGTCACATACCACTTCGGGTTCAATCCTCTTGCAGACGAGTATAAGGTGCTTCAAGTTCAACGGTTGTCATGCAAGGGTGAGCATAGTTGGGTGTATAAGATTTTTACCTTAGGAGCAAGTTCATGGAGGCGCATTGAGGAAGACCTTGATGTTGATCGTCTAGCCCCTTTTGATTCTTCTAATAGCTACTTTTGTAAGGGTGTTTATGCCGATGGGGTCATGTATTGGTTGACAAGGGATGTCATATTGACTTTCGAATTTGGAGACGAGAAATTCAGAGTTATGCCACTTCCACAATGCAGTCGTCTCTACTGCCGTCCTAAGCTTGTTGAAGTGAGCGGATGCTTGTCTATAATAGGGCTTCAAGATAAAGAGATGGAGTTGTGGATCTTAAAGGATTACCGAAATCAGGTGTGGGTTAATGAAAATACACAAAGATATGTGGTTCAACCACCGAAGAGAGCAGAATATCTTATTCCTTTGGGTACAATCCACAGCGGTGAGCTACTTCTCCGATCTCATATGAGAAAAATAGGAAGGACTGTGATGGTGCACTTTTATAACAGGAAGAGTAATATATTGAAGAGCAGACAAATTGGGTTGCCAGAATTTATGTTTCCGGGTGATAGTTGCTTGCAGCCACTTACTCTTTTTGAAGGAGGAAGCATTGTTCCCTTACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

427

Amino Acids

48.73

Weight (kDa)

6.89

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 55 - 86 9.7e-06 F-box-like
FBA_3 PF08268 105 - 398 2.1e-36 F-box associated beta propeller domain
FBA_1 PF07734 174 - 338 1.5e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1158
Acc16I TGCGCA 1 cut(s) 209
AccBSI CCGCTC 1 cut(s) 936
AciI CCGC 4 cut(s) 98, 286, 936, 1095
AclWI GGATC 1 cut(s) 992
AcsI RAATTY 3 cut(s) 854, 869, 1205
AdeI CACNNNGTG 1 cut(s) 455
AfaI GTAC 2 cut(s) 69, 1084
AfiI CCNNNNNNNGG 2 cut(s) 297, 1006
AhlI ACTAGT 1 cut(s) 428
AleI CACNNNNGTG 1 cut(s) 1095
AloI GAACNNNNNNTCC 1 cut(s) 1251
AluBI AGCT 4 cut(s) 27, 783, 922, 1102
AluI AGCT 4 cut(s) 27, 783, 922, 1102
Alw21I GWGCWC 2 cut(s) 451, 1152
Alw26I GTCTC 4 cut(s) 64, 89, 855, 908
Alw44I GTGCAC 2 cut(s) 447, 1148
AlwI GGATC 1 cut(s) 992
ApaLI GTGCAC 2 cut(s) 447, 1148
ApeKI GCWGC 3 cut(s) 100, 343, 1234
ApoI RAATTY 3 cut(s) 854, 869, 1205
AspLEI GCGC 3 cut(s) 210, 269, 729
AsuC2I CCSGG 1 cut(s) 1218
AsuHPI GGTGA 6 cut(s) 235, 389, 575, 686, 1109, 1232
AsuII TTCGAA 1 cut(s) 852
AxyI CCTNAGG 1 cut(s) 706
BaeGI GKGCMC 2 cut(s) 451, 1152
BbsI GAAGAC 2 cut(s) 467, 744
Bbv12I GWGCWC 2 cut(s) 451, 1152
BbvI GCAGC 3 cut(s) 87, 355, 1246
BccI CCATC 3 cut(s) 803, 967, 1138
BceAI ACGGC 1 cut(s) 897
BcnI CCSGG 1 cut(s) 1218
BcoDI GTCTC 4 cut(s) 64, 89, 855, 908
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 5 cut(s) 41, 255, 429, 548, 758
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 3 cut(s) 101, 344, 1235
BlsI GCNGC 3 cut(s) 102, 345, 1236
Bme1390I CCNGG 1 cut(s) 1218
BmrFI CCNGG 1 cut(s) 1218
BmsI GCATC 4 cut(s) 53, 121, 195, 929
BpiI GAAGAC 2 cut(s) 467, 744
Bpu10I CCTNAGC 1 cut(s) 918
Bpu14I TTCGAA 1 cut(s) 852
BpuMI CCSGG 1 cut(s) 1218
BsaBI GATNNNNATC 1 cut(s) 750
BsaI GGTCTC 1 cut(s) 64
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 1006
Bse21I CCTNAGG 1 cut(s) 706
Bse8I GATNNNNATC 1 cut(s) 750
BseGI GGATG 3 cut(s) 590, 841, 944
BseJI GATNNNNATC 1 cut(s) 750
BseLI CCNNNNNNNGG 2 cut(s) 297, 1006
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 302, 305
BseSI GKGCMC 2 cut(s) 451, 1152
BseXI GCAGC 3 cut(s) 87, 355, 1246
BseYI CCCAGC 2 cut(s) 23, 290
BsgI GTGCAG 1 cut(s) 409
BsiHKAI GWGCWC 2 cut(s) 451, 1152
BsiSI CCGG 1 cut(s) 1217
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 297, 1006
BsmAI GTCTC 4 cut(s) 64, 89, 855, 908
BsmBI CGTCTC 3 cut(s) 89, 855, 908
BsmFI GGGAC 1 cut(s) 5
BsmI GAATGC 1 cut(s) 579
Bso31I GGTCTC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 852
Bsp1286I GDGCHC 2 cut(s) 451, 1152
Bsp143I GATC 4 cut(s) 468, 751, 984, 1112
BspACI CCGC 4 cut(s) 98, 286, 936, 1095
BspCNI CTCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 992
BspQI GCTCTTC 1 cut(s) 1175
BspT104I TTCGAA 1 cut(s) 852
BspTNI GGTCTC 1 cut(s) 64
BsrBI CCGCTC 1 cut(s) 936
BssMI GATC 4 cut(s) 468, 751, 984, 1112
Bst4CI ACNGT 3 cut(s) 275, 660, 1141
Bst6I CTCTTC 5 cut(s) 359, 364, 1049, 1160, 1175
BstAPI GCANNNNNTGC 2 cut(s) 131, 455
BstBI TTCGAA 1 cut(s) 852
BstC8I GCNNGC 1 cut(s) 1232
BstDEI CTNAG 3 cut(s) 195, 706, 918
BstF5I GGATG 3 cut(s) 590, 841, 944
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 3 cut(s) 210, 269, 729
BstKTI GATC 4 cut(s) 471, 754, 987, 1115
BstMAI GTCTC 4 cut(s) 64, 89, 855, 908
BstMBI GATC 4 cut(s) 468, 751, 984, 1112
BstMWI GCNNNNNNNGC 2 cut(s) 131, 455
BstSCI CCNGG 1 cut(s) 1216
BstSLI GKGCMC 2 cut(s) 451, 1152
BstV1I GCAGC 3 cut(s) 87, 355, 1246
BstV2I GAAGAC 2 cut(s) 467, 744
BstX2I RGATCY 1 cut(s) 984
BstYI RGATCY 1 cut(s) 984
Bsu36I CCTNAGG 1 cut(s) 706
BtsCI GGATG 3 cut(s) 590, 841, 944
Cac8I GCNNGC 1 cut(s) 1232
CfoI GCGC 3 cut(s) 210, 269, 729
Csp6I GTAC 2 cut(s) 68, 1083
CviAII CATG 4 cut(s) 576, 666, 720, 817
CviJI RGCY 8 cut(s) 27, 465, 761, 783, 922, 958, 1102, 1237
CviKI_1 RGCY 8 cut(s) 27, 465, 761, 783, 922, 958, 1102, 1237
CviQI GTAC 2 cut(s) 68, 1083
DdeI CTNAG 3 cut(s) 195, 706, 918
DpnI GATC 4 cut(s) 470, 753, 986, 1114
DpnII GATC 4 cut(s) 468, 751, 984, 1112
DraIII CACNNNGTG 1 cut(s) 455
Eam1104I CTCTTC 5 cut(s) 359, 364, 1049, 1160, 1175
EarI CTCTTC 5 cut(s) 359, 364, 1049, 1160, 1175
Eco31I GGTCTC 1 cut(s) 64
Eco32I GATATC 1 cut(s) 175
Eco81I CCTNAGG 1 cut(s) 706
EcoRV GATATC 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 581
Esp3I CGTCTC 3 cut(s) 89, 855, 908
FaeI CATG 4 cut(s) 579, 669, 723, 820
FaqI GGGAC 1 cut(s) 5
FatI CATG 4 cut(s) 575, 665, 719, 816
FauNDI CATATG 1 cut(s) 1119
Fnu4HI GCNGC 3 cut(s) 101, 344, 1235
FokI GGATG 3 cut(s) 577, 848, 951
Fsp4HI GCNGC 3 cut(s) 101, 344, 1235
FspAI RTGCGCAY 1 cut(s) 209
FspBI CTAG 5 cut(s) 41, 255, 429, 548, 758
FspI TGCGCA 1 cut(s) 209
GlaI GCGC 3 cut(s) 209, 268, 728
GluI GCNGC 3 cut(s) 101, 344, 1235
GsaI CCCAGC 2 cut(s) 27, 294
HaeII RGCGCY 1 cut(s) 270
HapII CCGG 1 cut(s) 1217
HhaI GCGC 3 cut(s) 210, 269, 729
Hin1II CATG 4 cut(s) 579, 669, 723, 820
Hin6I GCGC 3 cut(s) 208, 267, 727
HinP1I GCGC 3 cut(s) 208, 267, 727
HincII GTYRAC 2 cut(s) 439, 828
HindII GTYRAC 2 cut(s) 439, 828
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 2 cut(s) 197, 770
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 1 cut(s) 1217
HphI GGTGA 6 cut(s) 235, 389, 575, 686, 1109, 1232
Hpy166II GTNNAC 5 cut(s) 237, 439, 449, 828, 1150
Hpy188I TCNGA 5 cut(s) 364, 513, 595, 875, 1112
Hpy188III TCNNGA 2 cut(s) 88, 962
Hpy8I GTNNAC 5 cut(s) 237, 439, 449, 828, 1150
HpyAV CCTTC 4 cut(s) 81, 368, 1128, 1247
HpyCH4III ACNGT 3 cut(s) 275, 660, 1141
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 455
HpyF3I CTNAG 3 cut(s) 195, 706, 918
Hsp92II CATG 4 cut(s) 579, 669, 723, 820
HspAI GCGC 3 cut(s) 208, 267, 727
KspAI GTTAAC 1 cut(s) 439
Kzo9I GATC 4 cut(s) 468, 751, 984, 1112
LguI GCTCTTC 1 cut(s) 1175
LmnI GCTCC 1 cut(s) 710
LpnPI CCDG 9 cut(s) 37, 207, 304, 436, 534, 992, 1147, 1215, 1230
Lsp1109I GCAGC 3 cut(s) 87, 355, 1246
LweI GCATC 4 cut(s) 53, 121, 195, 929
MaeI CTAG 5 cut(s) 41, 255, 429, 548, 758
MaeIII GTNAC 4 cut(s) 275, 377, 515, 598
MalI GATC 4 cut(s) 470, 753, 986, 1114
MbiI CCGCTC 1 cut(s) 936
MboI GATC 4 cut(s) 468, 751, 984, 1112
MflI RGATCY 1 cut(s) 984
MhlI GDGCHC 2 cut(s) 451, 1152
MluCI AATT 5 cut(s) 384, 854, 869, 1191, 1205
MlyI GAGTC 1 cut(s) 206
Mph1103I ATGCAT 1 cut(s) 581
MseI TTAA 4 cut(s) 438, 534, 989, 1017
MslI CAYNNNNRTG 1 cut(s) 1095
MspA1I CMGCKG 2 cut(s) 100, 1095
MspI CCGG 1 cut(s) 1217
MspR9I CCNGG 1 cut(s) 1218
Mva1269I GAATGC 1 cut(s) 579
MwoI GCNNNNNNNGC 2 cut(s) 131, 455
NciI CCSGG 1 cut(s) 1218
NdeI CATATG 1 cut(s) 1119
NdeII GATC 4 cut(s) 468, 751, 984, 1112
NlaIII CATG 4 cut(s) 579, 669, 723, 820
NmuCI GTSAC 2 cut(s) 377, 598
NsbI TGCGCA 1 cut(s) 209
NsiI ATGCAT 1 cut(s) 581
NspV TTCGAA 1 cut(s) 852
OliI CACNNNNGTG 1 cut(s) 1095
PciSI GCTCTTC 1 cut(s) 1175
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PctI GAATGC 1 cut(s) 579
PfeI GAWTC 1 cut(s) 770
PkrI GCNGC 3 cut(s) 102, 345, 1236
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PsiI TTATAA 1 cut(s) 1158
PspFI CCCAGC 2 cut(s) 23, 290
PsuI RGATCY 1 cut(s) 984
RsaI GTAC 2 cut(s) 69, 1084
RsaNI GTAC 2 cut(s) 68, 1083
RseI CAYNNNNRTG 1 cut(s) 1095
SapI GCTCTTC 1 cut(s) 1175
SaqAI TTAA 4 cut(s) 438, 534, 989, 1017
SatI GCNGC 3 cut(s) 101, 344, 1235
Sau3AI GATC 4 cut(s) 468, 751, 984, 1112
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 1218
SduI GDGCHC 2 cut(s) 451, 1152
SfaNI GCATC 4 cut(s) 53, 121, 195, 929
SfuI TTCGAA 1 cut(s) 852
SmiMI CAYNNNNRTG 1 cut(s) 1095
SpeI ACTAGT 1 cut(s) 428
Sse9I AATT 5 cut(s) 384, 854, 869, 1191, 1205
SsiI CCGC 4 cut(s) 98, 286, 936, 1095
SspMI CTAG 5 cut(s) 41, 255, 429, 548, 758
StyD4I CCNGG 1 cut(s) 1216
TaaI ACNGT 3 cut(s) 275, 660, 1141
TaqI TCGA 3 cut(s) 89, 504, 852
TasI AATT 5 cut(s) 384, 854, 869, 1191, 1205
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 4 cut(s) 438, 534, 989, 1017
Tru9I TTAA 4 cut(s) 438, 534, 989, 1017
TseFI GTSAC 2 cut(s) 377, 598
TseI GCWGC 3 cut(s) 100, 343, 1234
Tsp45I GTSAC 2 cut(s) 377, 598
TspDTI ATGAA 3 cut(s) 467, 708, 1035
VneI GTGCAC 2 cut(s) 447, 1148
XapI RAATTY 3 cut(s) 854, 869, 1205
XspI CTAG 5 cut(s) 41, 255, 429, 548, 758
Zsp2I ATGCAT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.