FvH4_4g30181

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000289
Physical Location & Seq
Forward (+)
29943075 .. 29944638
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30181.t1

Sequence Viewer

Length: 1185 bp
ATGGAATTAGGTCAAGTTGAAGATGTAGTCCCAAATCTCCCGGCAGATCTCAGTTTTGAGATCTTCTCAAGGCTACCGGCCAAGTCGTTGATCCGCTGCAAGTGCGTATGCAAATCATGGTCCTCTTTCATTCGTAGTCCATCTTTTGTCACTGCTTACCGAAACAAGCTCAAGAATCTCAACCAACACACCACTAACCTTTTCTTCACCATCCCTGGAAAACAAAGTCAGTTCTTCTCGACACGAATCTACCATGATAAGTATGGGATTCTCAATACTACACCTCCCATTCACCTTCCTAGCGCTCCATATAGGGTTTCGTACCCCTTTTCTTCATGCTATTTAGCCGCTTCGTCCGGCGTAGTCTGTTATTGTCTAGATTTTGACACAGCTGAACCTCATGAGAGAAAGAAACGAGTTGAAGTTCCTGTTCATATATCCAATCTCTACACCGGAGAGGTCGTTACTTTTCAGTTACCGCGGCACCTCTATCCCAAAGTTGCTGTTGCTCTTGGGTTCAGTTCTCTTACAAACGTGTATAAGGTTCTCACATCCCTTCGTACCGGGACTACGGGCTTCAAGTTCAAGGTTTTCACTCTAGGTGGTACAAGTAATACATGGAAGGATGTAGCAGACATAGACTTTGAAGATCTTGGTCTTGTTCCTGACCTATTGAATTTCTCGAAACATTATTTGTGCATCCATGGAGCCATACATTGGATGCAACGGTTTTATTGTAAGAATCGACCTGTTCTTTTGGCTTTTGACGTTGTAGAAGAGACATTCAGAATAATCCGACTTCCCCAAGATTCTAAAAACAAGCCTGGCCCCAAGTGTGGCCGATATCGTGTAATTGAAGTGAACGGATGTCTGGCTGTGTTTAATAATGAGTTCCGAGGGAGTGAGACAGCAATTGATTTCTGGATTTTGAAGGATTACCAAAATGAAGTTTGGGTCAAGGAGAAAATCATGTTTCCTGCTCCATGGTGGAGCTTGGGATACCCTCGTCCTGTTTGCTCAATTCACACAGGAGAGATCCTGCTCAATCCGGACCAACGTAAACATGGCTCGGTGCATCTTTATGATATGGAACTTAAAACATATAAGAAATCTGACATCGTTTTACCAGAGGGATCGGTAATAGTTGCCAGAGGTTATGAGGAAACCCTTTCTCCCTTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

395

Amino Acids

45.04

Weight (kDa)

8.89

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 11 - 48 5e-10 F-box-like
F-box PF00646 12 - 49 1.9e-11 F-box domain
FBA_3 PF08268 113 - 373 4.7e-31 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 483
AccB7I CCANNNNNTGG 1 cut(s) 717
AccII CGCG 1 cut(s) 481
AccIII TCCGGA 1 cut(s) 1048
AciI CCGC 4 cut(s) 94, 348, 479, 481
AclWI GGATC 3 cut(s) 85, 1030, 1141
AcoI YGGCCR 2 cut(s) 78, 838
AcsI RAATTY 1 cut(s) 676
AfaI GTAC 3 cut(s) 323, 562, 607
AfeI AGCGCT 1 cut(s) 304
AfiI CCNNNNNNNGG 2 cut(s) 717, 836
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 8 cut(s) 20, 422, 580, 586, 647, 676, 857, 931
AjnI CCWGG 2 cut(s) 214, 823
AluBI AGCT 3 cut(s) 169, 392, 993
AluI AGCT 3 cut(s) 169, 392, 993
Alw26I GTCTC 2 cut(s) 773, 899
AlwI GGATC 3 cut(s) 85, 1030, 1141
Aor13HI TCCGGA 1 cut(s) 1048
Aor51HI AGCGCT 1 cut(s) 304
AoxI GGCC 3 cut(s) 78, 826, 838
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 676
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 3 cut(s) 120, 827, 1051
AsuC2I CCSGG 2 cut(s) 41, 565
AsuHPI GGTGA 2 cut(s) 199, 284
AvaII GGWCC 2 cut(s) 120, 1051
BaeI ACNNNNGTAYC 2 cut(s) 991, 1024
BanI GGYRCC 1 cut(s) 483
BbvI GCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 148, 218
BciT130I CCWGG 2 cut(s) 216, 825
BciVI GTATCC 1 cut(s) 992
BcnI CCSGG 2 cut(s) 41, 565
BcoDI GTCTC 2 cut(s) 773, 899
BfaI CTAG 4 cut(s) 300, 377, 599, 1183
BfoI RGCGCY 1 cut(s) 306
BfuI GTATCC 1 cut(s) 992
BglII AGATCT 3 cut(s) 46, 60, 649
BisI GCNGC 3 cut(s) 97, 348, 482
BlsI GCNGC 3 cut(s) 98, 349, 483
Bme1390I CCNGG 4 cut(s) 41, 216, 565, 825
Bme18I GGWCC 2 cut(s) 120, 1051
BmgT120I GGNCC 3 cut(s) 120, 827, 1051
BmiI GGNNCC 3 cut(s) 485, 709, 829
BmrFI CCNGG 4 cut(s) 41, 216, 565, 825
BmsI GCATC 3 cut(s) 708, 711, 1084
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpuEI CTTGAG 2 cut(s) 52, 155
BpuMI CCSGG 2 cut(s) 41, 565
BsaJI CCNNGG 5 cut(s) 214, 479, 703, 895, 983
BsaWI WCCGGW 2 cut(s) 452, 1048
BsaXI ACNNNNNCTCC 5 cut(s) 268, 298, 447, 477, 1156
Bsc4I CCNNNNNNNGG 2 cut(s) 717, 836
Bse118I RCCGGY 1 cut(s) 76
BseAI TCCGGA 1 cut(s) 1048
BseBI CCWGG 2 cut(s) 216, 825
BseDI CCNNGG 5 cut(s) 214, 479, 703, 895, 983
BseGI GGATG 6 cut(s) 210, 551, 631, 699, 726, 872
BseLI CCNNNNNNNGG 2 cut(s) 717, 836
BseMII CTCAG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 481
BshFI GGCC 3 cut(s) 80, 828, 840
BshNI GGYRCC 1 cut(s) 483
BsiSI CCGG 6 cut(s) 41, 77, 357, 453, 564, 1049
BslFI GGGAC 2 cut(s) 14, 580
BslI CCNNNNNNNGG 2 cut(s) 717, 836
BsmAI GTCTC 2 cut(s) 773, 899
BsmFI GGGAC 2 cut(s) 14, 580
BsnI GGCC 3 cut(s) 80, 828, 840
Bsp13I TCCGGA 1 cut(s) 1048
Bsp143I GATC 6 cut(s) 46, 60, 90, 649, 1035, 1133
Bsp19I CCATGG 2 cut(s) 703, 983
BspACI CCGC 4 cut(s) 94, 348, 479, 481
BspANI GGCC 3 cut(s) 80, 828, 840
BspCNI CTCAG 1 cut(s) 63
BspEI TCCGGA 1 cut(s) 1048
BspFNI CGCG 1 cut(s) 481
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 3 cut(s) 485, 709, 829
BspPI GGATC 3 cut(s) 85, 1030, 1141
BspT107I GGYRCC 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 5 cut(s) 214, 479, 703, 895, 983
BssMI GATC 6 cut(s) 46, 60, 90, 649, 1035, 1133
BssT1I CCWWGG 2 cut(s) 703, 983
Bst2UI CCWGG 2 cut(s) 216, 825
Bst4CI ACNGT 1 cut(s) 729
Bst6I CTCTTC 1 cut(s) 771
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 3 cut(s) 479, 703, 983
BstF5I GGATG 6 cut(s) 210, 551, 631, 699, 726, 872
BstFNI CGCG 1 cut(s) 481
BstH2I RGCGCY 1 cut(s) 306
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 6 cut(s) 49, 63, 93, 652, 1038, 1136
BstMAI GTCTC 2 cut(s) 773, 899
BstMBI GATC 6 cut(s) 46, 60, 90, 649, 1035, 1133
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 2 cut(s) 216, 825
BstSCI CCNGG 4 cut(s) 39, 214, 563, 823
BstUI CGCG 1 cut(s) 481
BstV1I GCAGC 1 cut(s) 83
BstX2I RGATCY 4 cut(s) 46, 60, 649, 1035
BstYI RGATCY 4 cut(s) 46, 60, 649, 1035
BsuI GTATCC 1 cut(s) 992
BsuRI GGCC 3 cut(s) 80, 828, 840
BtgI CCRYGG 3 cut(s) 479, 703, 983
BtsCI GGATG 6 cut(s) 210, 551, 631, 699, 726, 872
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
CciI TCATGA 1 cut(s) 400
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 3 cut(s) 120, 827, 1051
Cfr42I CCGCGG 1 cut(s) 482
Csp6I GTAC 3 cut(s) 322, 561, 606
CviAII CATG 9 cut(s) 117, 254, 336, 401, 618, 704, 970, 984, 1064
CviQI GTAC 3 cut(s) 322, 561, 606
DdeI CTNAG 1 cut(s) 50
DpnI GATC 6 cut(s) 48, 62, 92, 651, 1037, 1135
DpnII GATC 6 cut(s) 46, 60, 90, 649, 1035, 1133
EaeI YGGCCR 2 cut(s) 78, 838
Eam1104I CTCTTC 1 cut(s) 771
EarI CTCTTC 1 cut(s) 771
Eco130I CCWWGG 2 cut(s) 703, 983
Eco32I GATATC 1 cut(s) 845
Eco47I GGWCC 2 cut(s) 120, 1051
Eco47III AGCGCT 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 214, 823
EcoRV GATATC 1 cut(s) 845
EcoT14I CCWWGG 2 cut(s) 703, 983
ErhI CCWWGG 2 cut(s) 703, 983
FaeI CATG 9 cut(s) 120, 257, 339, 404, 621, 707, 973, 987, 1067
FaqI GGGAC 2 cut(s) 14, 580
FatI CATG 9 cut(s) 116, 253, 335, 400, 617, 703, 969, 983, 1063
Fnu4HI GCNGC 3 cut(s) 97, 348, 482
FokI GGATG 6 cut(s) 197, 538, 638, 686, 733, 879
Fsp4HI GCNGC 3 cut(s) 97, 348, 482
FspBI CTAG 4 cut(s) 300, 377, 599, 1183
GlaI GCGC 1 cut(s) 304
GluI GCNGC 3 cut(s) 97, 348, 482
HaeII RGCGCY 1 cut(s) 306
HaeIII GGCC 3 cut(s) 80, 828, 840
HapII CCGG 6 cut(s) 41, 77, 357, 453, 564, 1049
HhaI GCGC 1 cut(s) 305
Hin1II CATG 9 cut(s) 120, 257, 339, 404, 621, 707, 973, 987, 1067
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HinfI GANTC 5 cut(s) 175, 246, 268, 742, 809
HpaII CCGG 6 cut(s) 41, 77, 357, 453, 564, 1049
HphI GGTGA 2 cut(s) 199, 284
Hpy166II GTNNAC 2 cut(s) 862, 1061
Hpy188I TCNGA 4 cut(s) 788, 797, 896, 1114
Hpy188III TCNNGA 8 cut(s) 172, 238, 377, 401, 665, 682, 922, 1049
Hpy8I GTNNAC 2 cut(s) 862, 1061
HpyAV CCTTC 4 cut(s) 305, 566, 616, 925
HpyCH4III ACNGT 1 cut(s) 729
HpyCH4IV ACGT 3 cut(s) 534, 768, 1057
HpyCH4V TGCA 5 cut(s) 99, 111, 699, 724, 1075
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 3 cut(s) 534, 768, 1057
Hsp92II CATG 9 cut(s) 120, 257, 339, 404, 621, 707, 973, 987, 1067
HspAI GCGC 1 cut(s) 303
Kpn2I TCCGGA 1 cut(s) 1048
KspI CCGCGG 1 cut(s) 482
Kzo9I GATC 6 cut(s) 46, 60, 90, 649, 1035, 1133
LmnI GCTCC 4 cut(s) 310, 707, 985, 990
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 3 cut(s) 708, 711, 1084
MaeI CTAG 4 cut(s) 300, 377, 599, 1183
MaeII ACGT 3 cut(s) 534, 768, 1057
MaeIII GTNAC 3 cut(s) 148, 463, 474
MalI GATC 6 cut(s) 48, 62, 92, 651, 1037, 1135
MboI GATC 6 cut(s) 46, 60, 90, 649, 1035, 1133
MboII GAAGA 7 cut(s) 32, 55, 196, 226, 324, 659, 788
MfeI CAATTG 1 cut(s) 912
MflI RGATCY 4 cut(s) 46, 60, 649, 1035
MluCI AATT 5 cut(s) 5, 676, 852, 912, 1020
MmeI TCCRAC 1 cut(s) 820
MroI TCCGGA 1 cut(s) 1048
MseI TTAA 3 cut(s) 882, 1095, 1178
MslI CAYNNNNRTG 1 cut(s) 1080
MspA1I CMGCKG 3 cut(s) 96, 392, 481
MspI CCGG 6 cut(s) 41, 77, 357, 453, 564, 1049
MspR9I CCNGG 4 cut(s) 41, 216, 565, 825
MunI CAATTG 1 cut(s) 912
MvaI CCWGG 2 cut(s) 216, 825
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 102
NciI CCSGG 2 cut(s) 41, 565
NcoI CCATGG 2 cut(s) 703, 983
NdeII GATC 6 cut(s) 46, 60, 90, 649, 1035, 1133
NlaIII CATG 9 cut(s) 120, 257, 339, 404, 621, 707, 973, 987, 1067
NlaIV GGNNCC 3 cut(s) 485, 709, 829
NmuCI GTSAC 1 cut(s) 148
PagI TCATGA 1 cut(s) 400
PfeI GAWTC 5 cut(s) 175, 246, 268, 742, 809
PflMI CCANNNNNTGG 1 cut(s) 717
PkrI GCNGC 3 cut(s) 98, 349, 483
Psp6I CCWGG 2 cut(s) 214, 823
PspGI CCWGG 2 cut(s) 214, 823
PspN4I GGNNCC 3 cut(s) 485, 709, 829
PspPI GGNCC 3 cut(s) 120, 827, 1051
PsuI RGATCY 4 cut(s) 46, 60, 649, 1035
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 3 cut(s) 323, 562, 607
RsaNI GTAC 3 cut(s) 322, 561, 606
RseI CAYNNNNRTG 1 cut(s) 1080
SacII CCGCGG 1 cut(s) 482
SaqAI TTAA 3 cut(s) 882, 1095, 1178
SatI GCNGC 3 cut(s) 97, 348, 482
Sau3AI GATC 6 cut(s) 46, 60, 90, 649, 1035, 1133
Sau96I GGNCC 3 cut(s) 120, 827, 1051
ScrFI CCNGG 4 cut(s) 41, 216, 565, 825
SfaNI GCATC 3 cut(s) 708, 711, 1084
Sfr303I CCGCGG 1 cut(s) 482
SgrBI CCGCGG 1 cut(s) 482
SinI GGWCC 2 cut(s) 120, 1051
SmiMI CAYNNNNRTG 1 cut(s) 1080
SmlI CTYRAG 2 cut(s) 67, 170
SmoI CTYRAG 2 cut(s) 67, 170
Sse9I AATT 5 cut(s) 5, 676, 852, 912, 1020
SsiI CCGC 4 cut(s) 94, 348, 479, 481
SspMI CTAG 4 cut(s) 300, 377, 599, 1183
StyD4I CCNGG 4 cut(s) 39, 214, 563, 823
StyI CCWWGG 2 cut(s) 703, 983
TaaI ACNGT 1 cut(s) 729
TaiI ACGT 3 cut(s) 537, 771, 1060
TaqI TCGA 3 cut(s) 239, 683, 745
TasI AATT 5 cut(s) 5, 676, 852, 912, 1020
TauI GCSGC 2 cut(s) 350, 484
TfiI GAWTC 5 cut(s) 175, 246, 268, 742, 809
Tru1I TTAA 3 cut(s) 882, 1095, 1178
Tru9I TTAA 3 cut(s) 882, 1095, 1178
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 4 cut(s) 118, 324, 422, 960
TspGWI ACGGA 1 cut(s) 879
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 717
VpaK11BI GGWCC 2 cut(s) 120, 1051
XapI RAATTY 1 cut(s) 676
XbaI TCTAGA 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 2 cut(s) 260, 1061
XspI CTAG 4 cut(s) 300, 377, 599, 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.