FvH4_4g28520

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000289
Physical Location & Seq
Forward (+)
29131362 .. 29132501
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28520.t1

Sequence Viewer

Length: 1140 bp
ATGAAATCCAAGTCAGAGACCCCAGAGCTGCCAACCGAACTCATATGCTTCCAGATACTCTCAAGGCTACCTACCAAGTTGGTGGTCCGTTGCAGATGCGTCTGCAAATCATGGTCCGATCTTACCCGCCACCCTTCTTTTCTCGCCTTCCACCGCAGCTTCCGGTGCAGCTCTTTCACTCACCTCCTCTTCACCACGTCGTCCGAGACCACAACCGCACCTCAGCACTTTTACTCTTGCAAACTCAACCAAGAAGGAGGGAATAATAATATTATCAATCCAACAAAACACCTCTTTAGCCTTCCAGCACCTGCCTTTTCCTTTCTCGCCGGCACACATAGTCTCAATGGCTTGACGATTTTAGCCGATGAGTATATTAATGAAAAACCTGTTTATGTTTTCAATCCCTGCACTGAAGAGATTATAACTCTTACAGATACCAACTTCGTAGCCGATTTGTCTACACACCATCTCGGATTCAGTGCTGTTACAAACGAGTATAAGGTTCTCCAAGTGCATTGGTCTGGATCTTCTGATGGCGAGGATCAGGAAAAATATGTGACTTCTTTGATGTTCAAAATTTTTACTCTAGGTACAACTTCATGGAGGCACATAGAGTTGAACTTTCCTTTTGATCCTCGTAGGCTAGGGTTTGCTAAGAAAAGTGTGTGCCTTCATGGAGGCATCCATTGGATGCATATGAATCAGAAGATTATAGTTGTATTTGACGTTGCAGCCGAGAGATTCAGAGCCAACGTCCCACTTCCCGGAGATTTTGACTCCGGTGATATAGTTGAAGCGGGTGGATGTGTGGCTGTGTATGGTGACAAGTCATTGATTCAACAAGACATTATGTTGATGTGGATTTTGGAGGATTACGAAAATCATGTGTGGGTTAAGAAGACTATCATATTTCCGTCCGGTTGGGAGACATTAAGATGCCCTATTCCGGTGGGTACAATCCACACAGGTGAGCTCCTGCTCAAGCCTACGATCCGGGATTCAGATGATATCTGCGTGCATCTTTACAATATGGAGAGCGATAGCTTTCGTAAATGTAAGATTGGTTTGCCTGTGAAGTATGGTCTTTGGAGCTTGCTTACCAGCTATGATGAAAGTGTAATCTTCTTGAGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

380

Amino Acids

43.03

Weight (kDa)

6.34

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 9 - 48 4.6e-08 F-box-like
F-box PF00646 10 - 48 1.3e-06 F-box domain
FBA_3 PF08268 62 - 355 6.1e-36 F-box associated beta propeller domain
FBA_1 PF07734 125 - 279 2.3e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AarI CACCTGC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 461
AciI CCGC 4 cut(s) 127, 154, 216, 800
AclWI GGATC 5 cut(s) 535, 552, 629, 988, 1128
AcsI RAATTY 1 cut(s) 579
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 2 cut(s) 595, 958
AfiI CCNNNNNNNGG 2 cut(s) 767, 949
AgsI TTSAA 5 cut(s) 403, 577, 622, 797, 842
AjiI CACGTC 1 cut(s) 198
AleI CACNNNNGTG 1 cut(s) 969
AluBI AGCT 7 cut(s) 28, 159, 171, 976, 1047, 1095, 1107
AluI AGCT 7 cut(s) 28, 159, 171, 976, 1047, 1095, 1107
Alw21I GWGCWC 1 cut(s) 978
Alw26I GTCTC 4 cut(s) 11, 200, 347, 923
AlwI GGATC 5 cut(s) 535, 552, 629, 988, 1128
AlwNI CAGNNNCTG 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 28, 156, 168, 734
ApoI RAATTY 1 cut(s) 579
AseI ATTAAT 1 cut(s) 378
AspS9I GGNCC 2 cut(s) 85, 114
AsuC2I CCSGG 2 cut(s) 768, 998
AsuHPI GGTGA 5 cut(s) 173, 184, 797, 836, 983
AvaII GGWCC 2 cut(s) 85, 114
BanII GRGCYC 1 cut(s) 978
BbsI GAAGAC 1 cut(s) 908
Bbv12I GWGCWC 1 cut(s) 978
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 15, 168, 180, 746
BccI CCATC 2 cut(s) 477, 530
BcnI CCSGG 2 cut(s) 768, 998
BcoDI GTCTC 4 cut(s) 11, 200, 347, 923
BfaI CTAG 2 cut(s) 590, 647
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 4 cut(s) 29, 157, 169, 735
BlsI GCNGC 4 cut(s) 30, 158, 170, 736
Bme1390I CCNGG 2 cut(s) 768, 998
Bme18I GGWCC 2 cut(s) 85, 114
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 85, 114
BmrFI CCNGG 2 cut(s) 768, 998
BmsI GCATC 5 cut(s) 86, 684, 693, 929, 1030
BpiI GAAGAC 1 cut(s) 908
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 2 cut(s) 46, 968
BpuMI CCSGG 2 cut(s) 768, 998
BsaI GGTCTC 2 cut(s) 11, 200
BsaWI WCCGGW 4 cut(s) 162, 782, 920, 949
Bsc4I CCNNNNNNNGG 2 cut(s) 767, 949
Bse118I RCCGGY 1 cut(s) 329
BseGI GGATG 3 cut(s) 684, 699, 812
BseLI CCNNNNNNNGG 2 cut(s) 767, 949
BseMII CTCAG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 4 cut(s) 15, 168, 180, 746
BsgI GTGCAG 2 cut(s) 187, 394
BsiHKAI GWGCWC 1 cut(s) 978
BsiSI CCGG 7 cut(s) 163, 330, 768, 783, 921, 950, 997
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 2 cut(s) 767, 949
BsmAI GTCTC 4 cut(s) 11, 200, 347, 923
BsmFI GGGAC 1 cut(s) 743
Bso31I GGTCTC 2 cut(s) 11, 200
Bsp1286I GDGCHC 1 cut(s) 978
Bsp143I GATC 6 cut(s) 118, 527, 544, 634, 993, 1133
BspACI CCGC 4 cut(s) 127, 154, 216, 800
BspCNI CTCAG 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 5 cut(s) 535, 552, 629, 988, 1128
BspTNI GGTCTC 2 cut(s) 11, 200
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssMI GATC 6 cut(s) 118, 527, 544, 634, 993, 1133
Bst6I CTCTTC 2 cut(s) 194, 411
BstC8I GCNNGC 3 cut(s) 331, 1019, 1097
BstDEI CTNAG 2 cut(s) 222, 657
BstF5I GGATG 3 cut(s) 684, 699, 812
BstKTI GATC 6 cut(s) 121, 530, 547, 637, 996, 1136
BstMAI GTCTC 4 cut(s) 11, 200, 347, 923
BstMBI GATC 6 cut(s) 118, 527, 544, 634, 993, 1133
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstSCI CCNGG 2 cut(s) 766, 996
BstV1I GCAGC 4 cut(s) 15, 168, 180, 746
BstV2I GAAGAC 1 cut(s) 908
BstX2I RGATCY 2 cut(s) 527, 1133
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 2 cut(s) 527, 1133
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 3 cut(s) 684, 699, 812
BtsIMutI CAGTG 2 cut(s) 411, 487
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 3 cut(s) 331, 1019, 1097
CaiI CAGNNNCTG 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 85, 114
CseI GACGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 594, 957
CviAII CATG 4 cut(s) 111, 603, 677, 887
CviQI GTAC 2 cut(s) 594, 957
DdeI CTNAG 2 cut(s) 222, 657
DpnI GATC 6 cut(s) 120, 529, 546, 636, 995, 1135
DpnII GATC 6 cut(s) 118, 527, 544, 634, 993, 1133
Eam1104I CTCTTC 2 cut(s) 194, 411
EarI CTCTTC 2 cut(s) 194, 411
Ecl136II GAGCTC 1 cut(s) 976
Eco24I GRGCYC 1 cut(s) 978
Eco31I GGTCTC 2 cut(s) 11, 200
Eco32I GATATC 1 cut(s) 1012
Eco47I GGWCC 2 cut(s) 85, 114
Eco53kI GAGCTC 1 cut(s) 976
Eco57I CTGAAG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 976
EcoRV GATATC 1 cut(s) 1012
EcoT22I ATGCAT 1 cut(s) 699
EcoT38I GRGCYC 1 cut(s) 978
FaeI CATG 4 cut(s) 114, 606, 680, 890
FaqI GGGAC 1 cut(s) 743
FatI CATG 4 cut(s) 110, 602, 676, 886
FauI CCCGC 2 cut(s) 134, 793
FauNDI CATATG 2 cut(s) 44, 699
FblI GTMKAC 1 cut(s) 461
Fnu4HI GCNGC 4 cut(s) 29, 157, 169, 735
FokI GGATG 3 cut(s) 671, 706, 819
FriOI GRGCYC 1 cut(s) 978
Fsp4HI GCNGC 4 cut(s) 29, 157, 169, 735
FspBI CTAG 2 cut(s) 590, 647
GluI GCNGC 4 cut(s) 29, 157, 169, 735
HapII CCGG 7 cut(s) 163, 330, 768, 783, 921, 950, 997
HgaI GACGC 1 cut(s) 88
Hin1II CATG 4 cut(s) 114, 606, 680, 890
HinfI GANTC 6 cut(s) 477, 703, 744, 779, 838, 1001
HpaII CCGG 7 cut(s) 163, 330, 768, 783, 921, 950, 997
HphI GGTGA 5 cut(s) 173, 184, 797, 836, 983
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 8 cut(s) 16, 118, 205, 476, 535, 708, 749, 1006
Hpy188III TCNNGA 5 cut(s) 52, 525, 548, 1129, 1137
Hpy8I GTNNAC 1 cut(s) 462
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 5 cut(s) 144, 157, 248, 311, 683
HpyCH4IV ACGT 3 cut(s) 197, 729, 756
HpyCH4V TGCA 9 cut(s) 93, 105, 168, 240, 411, 517, 697, 734, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 2 cut(s) 222, 657
HpySE526I ACGT 3 cut(s) 197, 729, 756
Hsp92II CATG 4 cut(s) 114, 606, 680, 890
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 6 cut(s) 118, 527, 544, 634, 993, 1133
LmnI GCTCC 2 cut(s) 981, 1092
Lsp1109I GCAGC 4 cut(s) 15, 168, 180, 746
LweI GCATC 5 cut(s) 86, 684, 693, 929, 1030
MaeI CTAG 2 cut(s) 590, 647
MaeII ACGT 3 cut(s) 197, 729, 756
MaeIII GTNAC 3 cut(s) 487, 559, 824
MalI GATC 6 cut(s) 120, 529, 546, 636, 995, 1135
MboI GATC 6 cut(s) 118, 527, 544, 634, 993, 1133
MboII GAAGA 6 cut(s) 181, 428, 522, 721, 913, 1117
MflI RGATCY 2 cut(s) 527, 1133
MhlI GDGCHC 1 cut(s) 978
MluCI AATT 1 cut(s) 579
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 1 cut(s) 305
Mph1103I ATGCAT 1 cut(s) 699
MroNI GCCGGC 1 cut(s) 329
MseI TTAA 3 cut(s) 378, 897, 935
MslI CAYNNNNRTG 2 cut(s) 937, 969
MspI CCGG 7 cut(s) 163, 330, 768, 783, 921, 950, 997
MspR9I CCNGG 2 cut(s) 768, 998
MwoI GCNNNNNNNGC 1 cut(s) 165
NaeI GCCGGC 1 cut(s) 331
NciI CCSGG 2 cut(s) 768, 998
NdeI CATATG 2 cut(s) 44, 699
NdeII GATC 6 cut(s) 118, 527, 544, 634, 993, 1133
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 4 cut(s) 114, 606, 680, 890
NmeAIII GCCGAG 1 cut(s) 763
NmuCI GTSAC 2 cut(s) 559, 824
NsiI ATGCAT 1 cut(s) 699
OliI CACNNNNGTG 1 cut(s) 969
PaqCI CACCTGC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 735
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 5 cut(s) 477, 703, 744, 838, 1001
PfoI TCCNGGA 2 cut(s) 766, 996
PkrI GCNGC 4 cut(s) 30, 158, 170, 736
PleI GAGTC 1 cut(s) 773
PpsI GAGTC 1 cut(s) 773
PshBI ATTAAT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 978
PspPI GGNCC 2 cut(s) 85, 114
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 2 cut(s) 527, 1133
RsaI GTAC 2 cut(s) 595, 958
RsaNI GTAC 2 cut(s) 594, 957
RseI CAYNNNNRTG 2 cut(s) 937, 969
SacI GAGCTC 1 cut(s) 978
SaqAI TTAA 3 cut(s) 378, 897, 935
SatI GCNGC 4 cut(s) 29, 157, 169, 735
Sau3AI GATC 6 cut(s) 118, 527, 544, 634, 993, 1133
Sau96I GGNCC 2 cut(s) 85, 114
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 2 cut(s) 768, 998
SduI GDGCHC 1 cut(s) 978
SfaNI GCATC 5 cut(s) 86, 684, 693, 929, 1030
SinI GGWCC 2 cut(s) 85, 114
SmiMI CAYNNNNRTG 2 cut(s) 937, 969
SmlI CTYRAG 3 cut(s) 61, 983, 1129
SmoI CTYRAG 3 cut(s) 61, 983, 1129
Sse9I AATT 1 cut(s) 579
SsiI CCGC 4 cut(s) 127, 154, 216, 800
SspI AATATT 1 cut(s) 271
SspMI CTAG 2 cut(s) 590, 647
SstI GAGCTC 1 cut(s) 978
StyD4I CCNGG 2 cut(s) 766, 996
TaiI ACGT 3 cut(s) 200, 732, 759
TasI AATT 1 cut(s) 579
TfiI GAWTC 5 cut(s) 477, 703, 744, 838, 1001
Tru1I TTAA 3 cut(s) 378, 897, 935
Tru9I TTAA 3 cut(s) 378, 897, 935
TscAI CASTG 2 cut(s) 418, 487
TseFI GTSAC 2 cut(s) 559, 824
TseI GCWGC 4 cut(s) 28, 156, 168, 734
Tsp45I GTSAC 2 cut(s) 559, 824
TspDTI ATGAA 6 cut(s) 17, 396, 591, 665, 716, 1128
TspGWI ACGGA 2 cut(s) 77, 906
TspRI CASTG 2 cut(s) 418, 487
VpaK11BI GGWCC 2 cut(s) 85, 114
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 1 cut(s) 579
XmiI GTMKAC 1 cut(s) 461
XspI CTAG 2 cut(s) 590, 647
Zsp2I ATGCAT 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.