pycom13g01750

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000289
Physical Location & Seq
Reverse (-)
1159291 .. 1159557
267 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01750.1

Sequence Viewer

Length: 267 bp
ATGGAAGTAGCTGAAGACGAAGGCGATGATGTTCCGAAAATTCCATCACTATTTACGGAGCTCCCAAATGAAATCATATGGTTTCAGATACTCCCAAAGCTACCAGCCAAGTCTCTGATGCGGTTCAAATGTGTTTCCAAGGCGTGGTTCGCTCTCACCACCCGAAACCCTTCCTTTCTCAGTGCCTACCGAAACCTGCATTCCAATCGAAACACCAGTCTCCTCCTCGATCTCAGTGTTAAGGATACAATTAGAACTAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

89

Amino Acids

10.12

Weight (kDa)

7.89

Isoelectric Point (pI)

24.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 19 - 55 1e-05 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 1 cut(s) 127
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 3 cut(s) 11, 61, 100
AluI AGCT 3 cut(s) 11, 61, 100
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 2 cut(s) 117, 224
ApoI RAATTY 1 cut(s) 39
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
Asp700I GAANNNNTTC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 148
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciVI GTATCC 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 117, 224
BfuAI ACCTGC 1 cut(s) 204
BfuI GTATCC 1 cut(s) 238
BmsI GCATC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 193, 247
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 2 cut(s) 212, 215
BsiHKAI GWGCWC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 2 cut(s) 117, 224
BsmI GAATGC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 121
BspCNI CTCAG 2 cut(s) 192, 246
BspMI ACCTGC 1 cut(s) 204
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 179, 233
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 2 cut(s) 117, 224
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 21
BsuI GTATCC 1 cut(s) 238
BtgZI GCGATG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 187, 241
BveI ACCTGC 1 cut(s) 204
CviJI RGCY 4 cut(s) 11, 61, 100, 107
CviKI_1 RGCY 4 cut(s) 11, 61, 100, 107
DdeI CTNAG 2 cut(s) 179, 233
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 138
FaiI YATR 2 cut(s) 77, 79
FauNDI CATATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 63
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 36, 87, 117
HpyAV CCTTC 2 cut(s) 14, 180
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 179, 233
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 2 cut(s) 58, 66
LpnPI CCDG 3 cut(s) 117, 209, 229
LweI GCATC 1 cut(s) 108
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 2 cut(s) 39, 249
MnlI CCTC 2 cut(s) 233, 236
MroXI GAANNNNTTC 1 cut(s) 169
MseI TTAA 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeI CATATG 1 cut(s) 77
NdeII GATC 1 cut(s) 229
PctI GAATGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 63
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 229
SduI GDGCHC 1 cut(s) 63
SetI ASST 4 cut(s) 13, 63, 102, 198
SfaNI GCATC 1 cut(s) 108
SgeI CNNG 8 cut(s) 116, 121, 151, 156, 174, 208, 228, 239
Sse9I AATT 2 cut(s) 39, 249
SsiI CCGC 1 cut(s) 121
SstI GAGCTC 1 cut(s) 63
StyI CCWWGG 1 cut(s) 138
TaqI TCGA 2 cut(s) 208, 228
TasI AATT 2 cut(s) 39, 249
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 187, 241
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 2 cut(s) 187, 241
Van91I CCANNNNNTGG 1 cut(s) 144
XapI RAATTY 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.