RLG00000020150

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000289
Physical Location & Seq
Reverse (-)
61755727 .. 61758321
2595 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020150

Sequence Viewer

Length: 597 bp
ATGCCTATAGAATACTACAATATTGCAAAGCTTCCCAACGACATCATATTGTTTGAGATATTCTCAAGATTACCGGCCAAGTCCTTGATACAGTTTAGGTGCTGGCACCCAAATTTGGCTGAACCAGAGAGAGAGCAGATATGTCAATCTTTGACTTGCAAAAATCTCACTTCTGAAGTTCGGATTCAAGAAGCAAAAAGCCGTGTTTTGTCATTGAGAACAATTGTTGAGCTTTTCTATCTCCACAACCAGGAGCTTAAAGATGAAGTTGAAGAGCATAAGAACCGGATTTCTGATCTTGAGAGTGCGAACATGAAGATGAATGAAGTCATTGAGAATCTAAAGAAAGAGGTGGAGAAGTTGGGCAGTGGGCATTCAAAACGATCAAACAAGTGGACAACCATGTCTAAGAAATTGGGCTTCAGCAAGAAGCCTCTGCAACTGGGGTGTCGTACAATCTCTAAGTTCGGCTGGAAATTGAAGGTTGTCGTAGCTGCTACTATTGCAGGAACTGCTGGTATCTTATTGTTTGTCATTCTCTTCCGTTGGATTTCACTGATTAGGGAAAATGACAACGAATCCTGCACTTTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

199

Amino Acids

22.88

Weight (kDa)

9.19

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 195, 406
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 115, 250
AgsI TTSAA 4 cut(s) 188, 272, 378, 481
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 4 cut(s) 31, 232, 256, 494
AluI AGCT 4 cut(s) 31, 232, 256, 494
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 112
BanI GGYRCC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 481
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 452
BmuI ACTGGG 1 cut(s) 452
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuEI CTTGAG 2 cut(s) 49, 320
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 250
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 115, 250
BseNI ACTGG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 568
BshFI GGCC 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 74, 286
BslI CCNNNNNNNGG 2 cut(s) 115, 250
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 295, 383
BspANI GGCC 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 447
BssAI RCCGGY 1 cut(s) 73
BssMI GATC 2 cut(s) 295, 383
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 267, 545
BstAPI GCANNNNNTGC 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 408, 462
BstKTI GATC 2 cut(s) 298, 386
BstMBI GATC 2 cut(s) 295, 383
BstMWI GCNNNNNNNGC 2 cut(s) 503, 512
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 481
BsuRI GGCC 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 373, 554
Cac8I GCNNGC 1 cut(s) 104
CaiI CAGNNNCTG 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 73
Csp6I GTAC 1 cut(s) 453
CviAII CATG 2 cut(s) 313, 403
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 2 cut(s) 408, 462
DpnI GATC 2 cut(s) 297, 385
DpnII GATC 2 cut(s) 295, 383
DrdI GACNNNNNNGTC 1 cut(s) 403
DseDI GACNNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 2 cut(s) 267, 545
EarI CTCTTC 2 cut(s) 267, 545
Eco57I CTGAAG 2 cut(s) 195, 406
EcoRII CCWGG 1 cut(s) 249
FaeI CATG 2 cut(s) 316, 406
FaiI YATR 7 cut(s) 8, 47, 142, 279, 314, 404, 595
FatI CATG 2 cut(s) 312, 402
Fnu4HI GCNGC 1 cut(s) 495
Fsp4HI GCNGC 1 cut(s) 495
GluI GCNGC 1 cut(s) 495
HaeIII GGCC 1 cut(s) 77
HapII CCGG 2 cut(s) 74, 286
Hin1II CATG 2 cut(s) 316, 406
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 184, 337, 578
HpaII CCGG 2 cut(s) 74, 286
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 3 cut(s) 175, 183, 295
Hpy188III TCNNGA 3 cut(s) 66, 188, 299
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 5 cut(s) 26, 159, 439, 506, 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 503, 512
HpyF3I CTNAG 2 cut(s) 408, 462
Hsp92II CATG 2 cut(s) 316, 406
Kzo9I GATC 2 cut(s) 295, 383
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 481
MalI GATC 2 cut(s) 297, 385
MboI GATC 2 cut(s) 295, 383
MboII GAAGA 3 cut(s) 284, 328, 532
MfeI CAATTG 1 cut(s) 222
MluCI AATT 4 cut(s) 112, 222, 413, 476
MmeI TCCRAC 1 cut(s) 527
MnlI CCTC 2 cut(s) 343, 444
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 317
MspI CCGG 2 cut(s) 74, 286
MspR9I CCNGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 503, 512
NdeII GATC 2 cut(s) 295, 383
NlaIII CATG 2 cut(s) 316, 406
NlaIV GGNNCC 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 267
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 3 cut(s) 184, 337, 578
PkrI GCNGC 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 2 cut(s) 295, 383
ScrFI CCNGG 1 cut(s) 251
SetI ASST 7 cut(s) 33, 101, 234, 258, 354, 486, 496
SfcI CTRYAG 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 2 cut(s) 64, 299
SmoI CTYRAG 2 cut(s) 64, 299
Sse9I AATT 4 cut(s) 112, 222, 413, 476
SspI AATATT 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 93
TasI AATT 4 cut(s) 112, 222, 413, 476
TfiI GAWTC 3 cut(s) 184, 337, 578
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 2 cut(s) 373, 561
TseI GCWGC 1 cut(s) 494
TspDTI ATGAA 4 cut(s) 279, 329, 335, 339
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 2 cut(s) 373, 561
XapI RAATTY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.