pycom02g05360

F-box associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000289
Physical Location & Seq
Reverse (-)
3587213 .. 3588047
835 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g05360.1

Sequence Viewer

Length: 669 bp
ATGGATTATTCATGGAGGCCATTACAAGTAGACGTTGGCGATCTTCCTTTTGATCTCCAACATCCCCCCTTTGACAGGAGGGCTATCCATTGGCTACACGAGGAGAATCAAAGTATATTAGTATTTGACCTTGGCGATGAGTCATTCAGAGTTATTCCGCTCCCTCAGGAGTATGATTATACTAGAGAATGGGATGATTATAGTTCGGATCTTCCCTATAACTTTACATATATAGTTGAAGTAGGAGGATGTGTGGGGGTGTTTGACTACCAAAACCATGTGTGGGTTAAGGAGACTATTCCCTTACTGTCGATAGTGAGACAATACCATGATAGGAAACGAAGGTGGAGAGTTGATTGTTTTGGTACAATTGGCAAAGGTGATGAGCTACTGCTTGAGGTCACTTTGTTTGGATTTTTACCAGGATATGATGACCTCCCACAATATTATCTTTATAATATAAAGAGCAAACATGAGAGGACACTTGATTTTAGTTTTTATACAGGGATGCGTTATGTCTATGATAATCGAGAAGAATCAATGGAGTTGATTACCAGTTATGAAGATAGCATCATCCCCCTTAAACTTCATAACTGTTGTACAGAATCTAGAGAGAAGAAGTGTTGGAAAATAATAATAATTAGATTTATTGTATTGTTTGGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_3

Protein Analysis

223

Amino Acids

26.63

Weight (kDa)

4.99

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccBSI CCGCTC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 30
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 216
AfaI GTAC 2 cut(s) 367, 601
AfiI CCNNNNNNNGG 2 cut(s) 75, 283
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
Alw26I GTCTC 2 cut(s) 287, 313
AlwI GGATC 1 cut(s) 216
AoxI GGCC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 392
AxyI CCTNAGG 1 cut(s) 165
BauI CACGAG 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 287, 313
BfaI CTAG 2 cut(s) 183, 609
Bme1390I CCNGG 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 2 cut(s) 498, 579
BpuEI CTTGAG 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 283
Bse1I ACTGG 1 cut(s) 555
Bse21I CCTNAGG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 5 cut(s) 61, 199, 254, 513, 573
BseLI CCNNNNNNNGG 2 cut(s) 75, 283
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 555
BseRI GAGGAG 1 cut(s) 116
BshFI GGCC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 75, 283
BsmAI GTCTC 2 cut(s) 287, 313
BsnI GGCC 1 cut(s) 19
Bsp1407I TGTACA 1 cut(s) 599
Bsp143I GATC 4 cut(s) 40, 52, 208, 662
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 178
BspPI GGATC 1 cut(s) 216
BsrBI CCGCTC 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 599
BsrI ACTGG 1 cut(s) 555
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 4 cut(s) 40, 52, 208, 662
BssSI CACGAG 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 130
Bst2BI CACGAG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 309, 596
BstAUI TGTACA 1 cut(s) 599
BstDEI CTNAG 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 73
BstF5I GGATG 5 cut(s) 61, 199, 254, 513, 573
BstKTI GATC 4 cut(s) 43, 55, 211, 665
BstMAI GTCTC 2 cut(s) 287, 313
BstMBI GATC 4 cut(s) 40, 52, 208, 662
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstX2I RGATCY 2 cut(s) 208, 662
BstYI RGATCY 2 cut(s) 208, 662
Bsu36I CCTNAGG 1 cut(s) 165
BsuRI GGCC 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 5 cut(s) 61, 199, 254, 513, 573
Csp6I GTAC 2 cut(s) 366, 600
CviAII CATG 4 cut(s) 12, 278, 329, 473
CviJI RGCY 4 cut(s) 19, 83, 94, 388
CviKI_1 RGCY 4 cut(s) 19, 83, 94, 388
CviQI GTAC 2 cut(s) 366, 600
DdeI CTNAG 1 cut(s) 165
DpnI GATC 4 cut(s) 42, 54, 210, 664
DpnII GATC 4 cut(s) 40, 52, 208, 662
Eco130I CCWWGG 1 cut(s) 130
Eco81I CCTNAGG 1 cut(s) 165
EcoNI CCTNNNNNAGG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 4 cut(s) 15, 281, 332, 476
FatI CATG 4 cut(s) 11, 277, 328, 472
FblI GTMKAC 1 cut(s) 30
FokI GGATG 5 cut(s) 48, 206, 261, 520, 560
FspBI CTAG 2 cut(s) 183, 609
HaeIII GGCC 1 cut(s) 19
Hin1II CATG 4 cut(s) 15, 281, 332, 476
HinfI GANTC 4 cut(s) 106, 140, 536, 605
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 149, 208
Hpy188III TCNNGA 3 cut(s) 167, 530, 609
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 336
HpyCH4III ACNGT 2 cut(s) 309, 596
HpyCH4IV ACGT 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 4 cut(s) 15, 281, 332, 476
Kzo9I GATC 4 cut(s) 40, 52, 208, 662
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 6 cut(s) 61, 152, 408, 435, 489, 568
LweI GCATC 2 cut(s) 498, 579
MaeI CTAG 2 cut(s) 183, 609
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 400
MalI GATC 4 cut(s) 42, 54, 210, 664
MbiI CCGCTC 1 cut(s) 160
MboI GATC 4 cut(s) 40, 52, 208, 662
MboII GAAGA 5 cut(s) 35, 203, 545, 575, 628
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 2 cut(s) 208, 662
MluCI AATT 2 cut(s) 369, 639
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 82, 605
MnlI CCTC 8 cut(s) 9, 72, 94, 174, 239, 391, 446, 471
MseI TTAA 3 cut(s) 288, 582, 667
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 423
NdeII GATC 4 cut(s) 40, 52, 208, 662
NlaIII CATG 4 cut(s) 15, 281, 332, 476
NmuCI GTSAC 1 cut(s) 400
PfeI GAWTC 3 cut(s) 106, 536, 605
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PsiI TTATAA 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PsuI RGATCY 2 cut(s) 208, 662
RsaI GTAC 2 cut(s) 367, 601
RsaNI GTAC 2 cut(s) 366, 600
SaqAI TTAA 3 cut(s) 288, 582, 667
Sau3AI GATC 4 cut(s) 40, 52, 208, 662
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 423
SetI ASST 7 cut(s) 36, 132, 347, 382, 390, 402, 438
SfaNI GCATC 2 cut(s) 498, 579
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 2 cut(s) 369, 639
SsiI CCGC 1 cut(s) 158
SspI AATATT 1 cut(s) 446
SspMI CTAG 2 cut(s) 183, 609
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 2 cut(s) 309, 596
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 311, 529
TasI AATT 2 cut(s) 369, 639
TatI WGTACW 1 cut(s) 599
TfiI GAWTC 3 cut(s) 106, 536, 605
Tru1I TTAA 3 cut(s) 288, 582, 667
Tru9I TTAA 3 cut(s) 288, 582, 667
TseFI GTSAC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 576, 578
XagI CCTNNNNNAGG 1 cut(s) 73
XbaI TCTAGA 1 cut(s) 608
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 2 cut(s) 183, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.