FvH4_6g37661

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000289
Physical Location & Seq
Forward (+)
29667375 .. 29670381
3007 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37661.t1

Sequence Viewer

Length: 789 bp
ATGAACCTTCTCTTGATTGATGATTCCATGCACACAAAGGACAAGAGAAGAGAGAAACTCAGGACTCTTGAAGGAGAAAAGCTACCATACAGATTTAAGAGATGTGCTGAAAAGTCAGGAAGACAGCTCAGGCTCCGCCAAAACTCTGAAGGAATAAGAGGAGGAAGAAGATATCAAGGAGCATTTGAGGAGAAGCAAAATGGAGATCCAGTTGCTCCTCCTTCATATATCTCTTTTAACCTTGTGCTCTTCGAGCTGCAGTGCAATACTTGGCGTAGCATCATCCCCCTCGTCAGCAAAGCCCATTGTGGAAGCATAGAAATCCCATATCCTTTTGGAATTGAACCGGGTTGTTACCGGGACAACAGCACAAATGACCGTGGTACTAAAAAGGGATCGGGCTTCTTAGAGAAATTCTTTAGCTGTAGCTACAACTACCTCGACCGACCCGGTGACCCTCCCAAATCTTTCTTGAACCTTAGCGACACTAGTCGACCTGAGGTGCTCGAGATATCTCTTGCGGGCACACTAAAAATTAACAGCCCTATCTTCTTTTTCAAATGCCGAATTGGGAGAGTATTAGTATCTGTTGCAAAATATATCCCTTCTGCTCGGAAAGTACTGCTTTGGGTTCATGCTAGATTTATTTATCCGTTTGGTGTCATGAAATGGCAAGAGGAAAGCTGTGTAGGATTAGGGATTCATGGATTCACCTCAGATTTCACTAAGTCTAGGCTCCGGTTCATCCAAGAGTTCTGGCTCCCATTCCTCCCACAATTCTGGCTCTAA

Protein Analysis

263

Amino Acids

30.29

Weight (kDa)

9.58

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12771 FvH4_1g24070 FvH4_1g24080 FvH4_1g24081 FvH4_3g05670 FvH4_3g33611 FvH4_3g43191 FvH4_4g07091 FvH4_4g07100 FvH4_4g28510 FvH4_4g28520 FvH4_4g30181 FvH4_4g30190 FvH4_4g34271 FvH4_4g34340 FvH4_5g31290 FvH4_6g37661 FvH4_7g33810
malus_domestica MD02G1067600.v1.1 MD03G1110700.v1.1 MD11G1124100.v1.1 MD11G1124200.v1.1 MD11G1124500.v1.1 MD13G1020600.v1.1 MD16G1019000.v1.1
prunus_persica Prupe.1G283900_v2.0.a1 Prupe.1G284000_v2.0.a1 Prupe.1G285200_v2.0.a1 Prupe.1G285300_v2.0.a1 Prupe.1G285500_v2.0.a1 Prupe.1G285600_v2.0.a1 Prupe.1G286300_v2.0.a1 Prupe.1G300600_v2.0.a1 Prupe.1G300900_v2.0.a1 Prupe.1G333100_v2.0.a1 Prupe.6G093100_v2.0.a1
pyrus_communis pycom02g05360 pycom04g05300 pycom11g10460 pycom11g10470 pycom11g10510 pycom13g01740 pycom13g01750 pycom13g04550
rosa_chinensis RchiOBHm_Chr2g0138411 RchiOBHm_Chr2g0138421 RchiOBHm_Chr4g0399251 RchiOBHm_Chr4g0436521
rosa_laevigata RLG00000005896 RLG00000005933 RLG00000006379 RLG00000006511 RLG00000009284 RLG00000019741 RLG00000019742 RLG00000019743 RLG00000020150 RLG00000024158 RLG00000024159 RLG00000030139 RLG00000032057
rosa_multiflora Rmu_co8310765.1_g000001 Rmu_co8476365.1_g000001 Rmu_sc0001426.1_g000004 Rmu_sc0001534.1_g000001 Rmu_sc0001534.1_g000009 Rmu_sc0001534.1_g000010 Rmu_sc0001556.1_g000019 Rmu_sc0001556.1_g000020 Rmu_sc0001779.1_g000020 Rmu_sc0003130.1_g000005 Rmu_sc0005961.1_g000007 Rmu_sc0025546.1_g000001 Rmu_sc0035131.1_g000001 Rmu_sc0035132.1_g000001
rosa_roxburghii Rroxscaffold_1G00062740 Rroxscaffold_2G00106090 Rroxscaffold_2G00106130 Rroxscaffold_2G00106210 Rroxscaffold_4G00324740 Rroxscaffold_4G00324760
rosa_rugosa Rorug04G0015700 Rorug04G0015800 Rorug04G0294500 Rorug04G0345900 Rorug04G0345900 Rorug05G0013800 Rorug05G0336100 Rorug05G0446400
rosa_samantha Rh2AG399300 Rh2BG407000 Rh2BG407300 Rh2BG407400 Rh2CG385800 Rh2DG419200 Rh4AG093400 Rh4AG348800 Rh4AG401200 Rh4AG406800 Rh4AG406900 Rh4CG101600 Rh4CG371900 Rh4CG428200 Rh4CG428300 Rh4DG085500 Rh4DG085700 Rh4DG351400 Rh4DG365000 Rh4DG408300 Rh4DG408400 Rh5AG108000 Rh5BG104700 Rh5BG411400 Rh5BG523400 Rh5DG103300 Rh5DG425800
rosa_wichuraiana Rw0G008940 Rw1G005620 Rw3G022740 Rw4G030510 Rw4G034940 Rw5G009440 Rw5G037570 Rw5G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 493
AciI CCGC 2 cut(s) 136, 521
AclWI GGATC 2 cut(s) 200, 403
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 2 cut(s) 385, 621
AgsI TTSAA 4 cut(s) 71, 344, 475, 559
AhlI ACTAGT 1 cut(s) 488
AluBI AGCT 6 cut(s) 82, 127, 256, 423, 429, 684
AluI AGCT 6 cut(s) 82, 127, 256, 423, 429, 684
Alw21I GWGCWC 2 cut(s) 249, 507
AlwI GGATC 2 cut(s) 200, 403
Ama87I CYCGRG 1 cut(s) 506
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 413
AsuC2I CCSGG 3 cut(s) 348, 359, 450
AsuHPI GGTGA 2 cut(s) 464, 703
AvaI CYCGRG 1 cut(s) 506
AxyI CCTNAGG 1 cut(s) 498
BaeGI GKGCMC 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 2 cut(s) 249, 507
BbvI GCAGC 1 cut(s) 243
BcnI CCSGG 3 cut(s) 348, 359, 450
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 3 cut(s) 489, 639, 732
BfmI CTRYAG 2 cut(s) 257, 424
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BmcAI AGTACT 1 cut(s) 621
Bme1390I CCNGG 3 cut(s) 348, 359, 450
BmeT110I CYCGRG 1 cut(s) 506
BmiI GGNNCC 3 cut(s) 134, 737, 761
BmrFI CCNGG 3 cut(s) 348, 359, 450
BmsI GCATC 1 cut(s) 288
BoxI GACNNNNGTC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 42, 74
Bpu10I CCTNAGC 2 cut(s) 128, 479
BpuMI CCSGG 3 cut(s) 348, 359, 450
BsaJI CCNNGG 1 cut(s) 379
BsaWI WCCGGW 1 cut(s) 738
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bse1I ACTGG 1 cut(s) 209
Bse21I CCTNAGG 1 cut(s) 498
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 2 cut(s) 282, 744
BseMII CTCAG 4 cut(s) 73, 142, 489, 729
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 3 cut(s) 174, 203, 207
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 1 cut(s) 243
Bsh1285I CGRYCG 1 cut(s) 445
BsiEI CGRYCG 1 cut(s) 445
BsiHKAI GWGCWC 2 cut(s) 249, 507
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 4 cut(s) 347, 358, 450, 739
BslFI GGGAC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 374
BsoBI CYCGRG 1 cut(s) 506
Bsp1286I GDGCHC 3 cut(s) 249, 507, 527
Bsp143I GATC 2 cut(s) 205, 395
BspACI CCGC 2 cut(s) 136, 521
BspCNI CTCAG 4 cut(s) 72, 141, 490, 728
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 3 cut(s) 134, 737, 761
BspMAI CTGCAG 1 cut(s) 261
BspPI GGATC 2 cut(s) 200, 403
BspQI GCTCTTC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 2 cut(s) 205, 395
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 2 cut(s) 43, 254
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 7 cut(s) 59, 128, 406, 479, 498, 715, 726
BstDSI CCRYGG 1 cut(s) 379
BstEII GGTNACC 1 cut(s) 452
BstF5I GGATG 2 cut(s) 282, 744
BstKTI GATC 2 cut(s) 208, 398
BstMBI GATC 2 cut(s) 205, 395
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstPAI GACNNNNGTC 1 cut(s) 489
BstPI GGTNACC 1 cut(s) 452
BstSCI CCNGG 3 cut(s) 346, 357, 448
BstSFI CTRYAG 2 cut(s) 257, 424
BstSLI GKGCMC 1 cut(s) 527
BstV1I GCAGC 1 cut(s) 243
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 780
BstYI RGATCY 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 2 cut(s) 282, 744
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 523
CciI TCATGA 1 cut(s) 663
Csp6I GTAC 2 cut(s) 384, 620
CviAII CATG 4 cut(s) 28, 635, 664, 704
CviQI GTAC 2 cut(s) 384, 620
DdeI CTNAG 7 cut(s) 59, 128, 406, 479, 498, 715, 726
DpnI GATC 2 cut(s) 207, 397
DpnII GATC 2 cut(s) 205, 395
Eam1104I CTCTTC 2 cut(s) 43, 254
EarI CTCTTC 2 cut(s) 43, 254
EciI GGCGGA 1 cut(s) 125
Eco32I GATATC 2 cut(s) 173, 513
Eco57I CTGAAG 1 cut(s) 168
Eco81I CCTNAGG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 506
Eco91I GGTNACC 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 452
EcoRV GATATC 2 cut(s) 173, 513
FaeI CATG 4 cut(s) 31, 638, 667, 707
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 374
FatI CATG 4 cut(s) 27, 634, 663, 703
FauI CCCGC 1 cut(s) 514
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 2 cut(s) 269, 731
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 3 cut(s) 489, 639, 732
GluI GCNGC 1 cut(s) 257
HapII CCGG 4 cut(s) 347, 358, 450, 739
Hin1II CATG 4 cut(s) 31, 638, 667, 707
HincII GTYRAC 1 cut(s) 494
HindII GTYRAC 1 cut(s) 494
HinfI GANTC 4 cut(s) 23, 64, 700, 708
HpaII CCGG 4 cut(s) 347, 358, 450, 739
HphI GGTGA 2 cut(s) 464, 703
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 3 cut(s) 148, 615, 718
Hpy188III TCNNGA 7 cut(s) 13, 61, 68, 117, 472, 508, 664
Hpy8I GTNNAC 1 cut(s) 494
HpyAV CCTTC 5 cut(s) 17, 65, 143, 231, 615
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 4 cut(s) 31, 259, 264, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 7 cut(s) 59, 128, 406, 479, 498, 715, 726
Hsp92II CATG 4 cut(s) 31, 638, 667, 707
Kzo9I GATC 2 cut(s) 205, 395
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 5 cut(s) 138, 179, 220, 741, 765
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 1 cut(s) 288
MaeI CTAG 3 cut(s) 489, 639, 732
MaeIII GTNAC 2 cut(s) 353, 452
MalI GATC 2 cut(s) 207, 397
MboI GATC 2 cut(s) 205, 395
MboII GAAGA 6 cut(s) 60, 132, 177, 180, 241, 541
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 3 cut(s) 249, 507, 527
MluCI AATT 5 cut(s) 339, 413, 534, 567, 776
MlyI GAGTC 1 cut(s) 58
MseI TTAA 3 cut(s) 96, 237, 537
MspI CCGG 4 cut(s) 347, 358, 450, 739
MspR9I CCNGG 3 cut(s) 348, 359, 450
MwoI GCNNNNNNNGC 1 cut(s) 253
NciI CCSGG 3 cut(s) 348, 359, 450
NdeII GATC 2 cut(s) 205, 395
NlaIII CATG 4 cut(s) 31, 638, 667, 707
NlaIV GGNNCC 3 cut(s) 134, 737, 761
NmuCI GTSAC 1 cut(s) 452
PaeR7I CTCGAG 1 cut(s) 506
PagI TCATGA 1 cut(s) 663
PciSI GCTCTTC 1 cut(s) 254
PfeI GAWTC 3 cut(s) 23, 700, 708
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PshAI GACNNNNGTC 1 cut(s) 489
PspEI GGTNACC 1 cut(s) 452
PspN4I GGNNCC 3 cut(s) 134, 737, 761
PstI CTGCAG 1 cut(s) 261
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 2 cut(s) 385, 621
RsaNI GTAC 2 cut(s) 384, 620
SalI GTCGAC 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 3 cut(s) 96, 237, 537
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 2 cut(s) 205, 395
ScaI AGTACT 1 cut(s) 621
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 3 cut(s) 348, 359, 450
SduI GDGCHC 3 cut(s) 249, 507, 527
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 2 cut(s) 257, 424
Sfr274I CTCGAG 1 cut(s) 506
SlaI CTCGAG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 5 cut(s) 339, 413, 534, 567, 776
SsiI CCGC 2 cut(s) 136, 521
SspMI CTAG 3 cut(s) 489, 639, 732
StyD4I CCNGG 3 cut(s) 346, 357, 448
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 4 cut(s) 252, 441, 493, 507
TaqII GACCGA 1 cut(s) 459
TasI AATT 5 cut(s) 339, 413, 534, 567, 776
TatI WGTACW 1 cut(s) 619
TfiI GAWTC 3 cut(s) 23, 700, 708
Tru1I TTAA 3 cut(s) 96, 237, 537
Tru9I TTAA 3 cut(s) 96, 237, 537
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 6 cut(s) 17, 213, 623, 680, 692, 733
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 1 cut(s) 266
XapI RAATTY 1 cut(s) 413
XhoI CTCGAG 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 493
XspI CTAG 3 cut(s) 489, 639, 732
ZrmI AGTACT 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.